Wall clock time and date at job start Mon Mar 30 2020 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47050 * 2 1 4 4 C 1.50705 * 109.47253 * 119.99866 * 2 1 3 5 5 H 1.08003 * 119.99597 * 120.00295 * 4 2 1 6 6 C 1.37867 * 119.99946 * 299.99878 * 4 2 1 7 7 N 1.31516 * 120.00546 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47038 * 60.00340 * 8 6 4 10 10 H 1.48499 * 109.47525 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47487 * 300.00289 * 8 6 4 12 12 N 1.46901 * 109.47161 * 240.00095 * 2 1 3 13 13 C 1.46900 * 110.99934 * 84.99672 * 12 2 1 14 14 C 1.53002 * 109.47151 * 180.02562 * 13 12 2 15 15 C 1.53003 * 115.55108 * 180.02562 * 14 13 12 16 16 C 1.53000 * 117.49792 * 34.41135 * 15 14 13 17 17 C 1.53002 * 60.02940 * 107.48056 * 16 15 14 18 18 C 1.53007 * 117.49585 * 325.66653 * 14 13 12 19 19 C 1.52997 * 117.49789 * 34.32587 * 14 13 12 20 20 H 1.09002 * 109.47088 * 299.99704 * 1 2 3 21 21 H 1.08997 * 109.47288 * 60.00207 * 1 2 3 22 22 H 1.08999 * 109.46740 * 180.02562 * 1 2 3 23 23 H 0.96995 * 120.00182 * 180.02562 * 7 6 4 24 24 H 1.00893 * 110.99834 * 208.95380 * 12 2 1 25 25 H 1.08999 * 109.47296 * 59.99765 * 13 12 2 26 26 H 1.08999 * 109.47210 * 300.00007 * 13 12 2 27 27 H 1.08999 * 115.54778 * 248.74497 * 15 14 13 28 28 H 1.09002 * 117.49833 * 214.98161 * 16 15 14 29 29 H 1.09002 * 117.49953 * 359.97438 * 16 15 14 30 30 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 31 31 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 32 32 H 1.08996 * 117.49867 * 215.00238 * 18 14 13 33 33 H 1.09002 * 117.49929 * 0.02946 * 18 14 13 34 34 H 1.08996 * 117.49905 * 359.97438 * 19 14 13 35 35 H 1.09008 * 117.49434 * 145.00486 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0081 10 1 1.8262 -0.4206 5.2204 11 1 1.8260 -2.5202 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5950 -0.5331 -3.5745 15 6 2.7157 0.2942 -4.8559 16 6 3.1183 1.7633 -4.7130 17 6 4.1162 0.7485 -5.2745 18 6 3.6327 -1.6336 -3.3441 19 6 2.1948 -2.0029 -3.7172 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7089 1.1613 3.4844 24 1 2.9173 -1.1204 -1.0287 25 1 2.7587 1.0463 -2.1182 26 1 1.0870 0.6163 -2.5525 27 1 2.0107 0.0403 -5.6475 28 1 2.6786 2.4759 -5.4108 29 1 3.2968 2.1406 -3.7060 30 1 4.3330 0.7934 -6.3418 31 1 4.9510 0.4578 -4.6369 32 1 4.4009 -1.7684 -4.1056 33 1 3.9499 -1.8195 -2.3180 34 1 1.5667 -2.4316 -2.9364 35 1 2.0171 -2.3806 -4.7242 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228775420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:55 Heat of formation + Delta-G solvation = 44.451250 kcal Electronic energy + Delta-G solvation = -13940.167229 eV Core-core repulsion = 11746.519244 eV Total energy + Delta-G solvation = -2193.647985 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.97678 -35.78977 -34.41044 -32.09381 -28.62443 -25.76964 -24.87781 -22.65956 -22.31999 -21.70604 -19.72440 -18.22341 -16.52825 -15.80945 -15.17966 -14.59249 -14.30056 -13.85903 -13.15909 -12.84051 -12.46215 -11.99795 -11.44380 -11.35277 -11.07038 -11.03076 -10.79210 -10.73067 -10.56935 -10.51303 -10.19270 -10.10984 -9.86179 -9.51776 -9.15712 -8.78990 -8.44946 -7.20413 -6.01132 -4.07760 3.31692 3.36095 3.38854 3.83810 4.18000 4.41017 4.79621 5.00861 5.05070 5.28258 5.29871 5.31409 5.49708 5.60011 5.71089 5.79276 5.94748 6.04590 6.19591 6.22909 6.34306 6.46862 6.50709 6.56231 6.72394 6.92834 7.17695 7.27205 7.54489 7.79420 7.92831 8.30092 8.42475 8.70685 9.03123 9.58192 11.05184 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046423 B = 0.007058 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.006939 B = 3966.427846 C = 4111.255576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.100 3.900 14 C -0.100 4.100 15 C -0.111 4.111 16 C -0.178 4.178 17 C -0.180 4.180 18 C -0.176 4.176 19 C -0.155 4.155 20 H 0.079 0.921 21 H 0.004 0.996 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.329 0.671 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -0.940 -12.377 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.320 5.320 13 C -0.030 4.030 14 C -0.100 4.100 15 C -0.130 4.130 16 C -0.214 4.214 17 C -0.217 4.217 18 C -0.213 4.213 19 C -0.192 4.192 20 H 0.098 0.902 21 H 0.023 0.977 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.186 -1.059 -12.378 12.825 hybrid contribution 1.052 0.163 1.055 1.498 sum 4.238 -0.895 -11.324 12.124 Atomic orbital electron populations 1.21706 0.97909 0.99288 0.99299 1.19077 0.92604 0.92278 0.85579 0.98288 1.21229 1.31482 1.12477 0.90532 0.92364 1.24916 0.95053 0.94999 0.99019 1.69890 1.36586 1.22899 1.23536 0.86588 0.79044 0.79803 0.82112 1.20365 1.21293 1.20190 1.60768 1.32011 1.33253 1.06014 1.21290 0.99199 0.93217 0.89277 1.20999 1.04341 0.89891 0.94765 1.21644 0.97833 0.95935 0.97574 1.22962 1.03636 0.92157 1.02687 1.22970 0.93409 1.04617 1.00716 1.23016 0.92522 1.03596 1.02160 1.22966 0.97845 0.96480 1.01894 0.90193 0.97707 0.95014 0.92885 0.85279 0.96093 0.91469 0.88004 0.89158 0.88419 0.89329 0.88797 0.89689 0.88605 0.87166 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.47 2.60 -68.86 -0.18 5.29 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.40 8.59 -34.44 -0.30 -14.70 16 5 H 0.06 1.59 7.62 -52.48 -0.40 1.19 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.69 -14.85 5.22 -107.95 -0.56 -15.42 16 13 C 0.10 1.87 5.11 -3.82 -0.02 1.85 16 14 C -0.10 -1.53 2.44 -154.50 -0.38 -1.91 16 15 C -0.11 -1.46 5.83 -90.58 -0.53 -1.99 16 16 C -0.18 -2.21 9.83 -26.73 -0.26 -2.48 16 17 C -0.18 -2.09 9.75 -26.69 -0.26 -2.35 16 18 C -0.18 -2.55 9.10 -26.69 -0.24 -2.80 16 19 C -0.15 -2.31 9.64 -26.69 -0.26 -2.56 16 20 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 21 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.33 6.97 6.11 -39.30 -0.24 6.73 16 25 H 0.02 0.41 6.82 -51.93 -0.35 0.05 16 26 H 0.07 1.31 7.44 -51.93 -0.39 0.93 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.34 6.75 -51.93 -0.35 0.99 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.12 7.78 -51.93 -0.40 0.72 16 32 H 0.08 1.09 7.78 -51.93 -0.40 0.69 16 33 H 0.10 1.49 6.35 -51.93 -0.33 1.16 16 34 H 0.11 1.85 7.58 -51.93 -0.39 1.46 16 35 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 279.37 15.07 4.21 4.21 Total: -1.00 -28.10 279.37 -8.54 -36.64 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.62 Total: 6.07 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.18 Total: -22.81 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.06 Total: -40.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.10 -8.54 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228775420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.087 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds