Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46535 * 2 1 4 4 C 1.50692 * 109.46883 * 240.00064 * 2 1 3 5 5 H 1.08003 * 120.00020 * 245.37075 * 4 2 1 6 6 C 1.37881 * 120.00148 * 65.37547 * 4 2 1 7 7 N 1.31520 * 119.99863 * 185.16145 * 6 4 2 8 8 Si 1.86797 * 120.00009 * 5.16194 * 6 4 2 9 9 H 1.48504 * 109.47216 * 269.99965 * 8 6 4 10 10 H 1.48504 * 109.47263 * 30.00164 * 8 6 4 11 11 H 1.48497 * 109.47067 * 150.00055 * 8 6 4 12 12 N 1.46899 * 109.47092 * 119.99670 * 2 1 3 13 13 C 1.46893 * 111.00146 * 275.00271 * 12 2 1 14 14 C 1.52998 * 109.47154 * 180.02562 * 13 12 2 15 15 C 1.53002 * 115.55454 * 179.97438 * 14 13 12 16 16 C 1.53006 * 117.49843 * 34.32425 * 15 14 13 17 17 C 1.52998 * 117.49497 * 325.66928 * 15 14 13 18 18 C 1.52999 * 117.50081 * 34.32480 * 14 13 12 19 19 C 1.53004 * 117.49606 * 325.66553 * 14 13 12 20 20 H 1.08999 * 109.47610 * 54.98358 * 1 2 3 21 21 H 1.09005 * 109.47091 * 174.98597 * 1 2 3 22 22 H 1.09005 * 109.47410 * 294.98230 * 1 2 3 23 23 H 0.96997 * 119.99767 * 355.00141 * 7 6 4 24 24 H 1.00897 * 110.99884 * 151.04425 * 12 2 1 25 25 H 1.09006 * 109.47028 * 300.00003 * 13 12 2 26 26 H 1.09004 * 109.47506 * 60.00050 * 13 12 2 27 27 H 1.09000 * 115.55555 * 179.97438 * 15 14 13 28 28 H 1.09008 * 117.49492 * 0.02562 * 16 15 14 29 29 H 1.08992 * 117.50150 * 145.01869 * 16 15 14 30 30 H 1.09004 * 117.49845 * 214.97520 * 17 15 14 31 31 H 1.08997 * 117.50144 * 359.97163 * 17 15 14 32 32 H 1.09000 * 117.49735 * 0.02562 * 18 14 13 33 33 H 1.09000 * 117.50160 * 145.02643 * 18 14 13 34 34 H 1.09003 * 117.49901 * 214.98209 * 19 14 13 35 35 H 1.08997 * 117.49823 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6363 -1.1337 6 6 1.7930 -0.1782 -2.4797 7 7 2.1413 -0.8472 -3.5571 8 14 0.9741 1.4928 -2.6419 9 1 -0.4992 1.3179 -2.7074 10 1 1.3213 2.3305 -1.4658 11 1 1.4491 2.1586 -3.8813 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2226 2.3468 14 6 2.5962 -0.5328 3.5741 15 6 2.7170 0.2945 4.8555 16 6 1.6793 1.3949 5.0865 17 6 3.1168 1.7644 4.7123 18 6 3.6343 -1.6327 3.3433 19 6 2.1968 -2.0028 3.7171 20 1 -0.3634 0.5897 -0.8416 21 1 -0.3633 -1.0238 -0.0898 22 1 -0.3634 0.4340 0.9315 23 1 2.6310 -1.6803 -3.4735 24 1 2.9173 -1.1204 1.0288 25 1 2.7588 1.0463 2.1181 26 1 1.0870 0.6164 2.5525 27 1 3.0826 -0.2437 5.7300 28 1 0.9102 1.5291 4.3257 29 1 1.3628 1.5808 6.1128 30 1 3.7454 2.1933 5.4926 31 1 3.2941 2.1419 3.7052 32 1 3.9516 -1.8178 2.3170 33 1 4.4028 -1.7673 4.1045 34 1 2.0201 -2.3807 4.7241 35 1 1.5685 -2.4318 2.9366 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228775430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = 44.685096 kcal Electronic energy + Delta-G solvation = -14048.898435 eV Core-core repulsion = 11855.260590 eV Total energy + Delta-G solvation = -2193.637845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08992 -35.93426 -34.70024 -32.21766 -29.33355 -25.76326 -24.38008 -22.76398 -22.55711 -21.81584 -19.67112 -18.38843 -17.37848 -15.87609 -15.59404 -14.72201 -14.10996 -13.63000 -13.39674 -13.02696 -12.55043 -12.34688 -11.82477 -11.49115 -11.38448 -11.23786 -11.10894 -10.74465 -10.66697 -10.47177 -10.37691 -9.99685 -9.75553 -9.71282 -9.03321 -8.67005 -8.46007 -7.46047 -6.43932 -4.10226 3.37115 3.42350 3.58025 3.65535 4.35594 4.46932 4.63125 4.88353 5.00366 5.06914 5.18050 5.30390 5.39372 5.48447 5.57844 5.66418 5.91662 5.97650 6.08152 6.13548 6.21291 6.26238 6.39079 6.39856 6.50088 6.60836 6.63942 6.79089 6.85886 7.45686 7.72404 8.10409 8.38797 8.49207 8.93117 9.60412 10.95775 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040644 B = 0.008238 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.742047 B = 3397.901960 C = 3740.153193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 H 0.000 1.000 4 C -0.596 4.596 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.913 5.913 8 Si 1.058 2.942 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.291 1.291 12 N -0.680 5.680 13 C 0.093 3.907 14 C -0.099 4.099 15 C -0.110 4.110 16 C -0.179 4.179 17 C -0.181 4.181 18 C -0.175 4.175 19 C -0.156 4.156 20 H 0.038 0.962 21 H 0.053 0.947 22 H 0.023 0.977 23 H 0.267 0.733 24 H 0.336 0.664 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 3.299 15.682 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.072 3.928 3 H 0.017 0.983 4 C -0.634 4.634 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.888 3.112 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.217 1.217 12 N -0.312 5.312 13 C -0.036 4.036 14 C -0.099 4.099 15 C -0.129 4.129 16 C -0.216 4.216 17 C -0.218 4.218 18 C -0.212 4.212 19 C -0.193 4.193 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.155 0.845 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.684 4.134 14.720 15.305 hybrid contribution 1.367 -0.610 0.925 1.759 sum 0.683 3.524 15.645 16.051 Atomic orbital electron populations 1.22012 0.98643 1.00915 0.97655 1.19568 0.91882 0.92948 0.88361 0.98289 1.22179 1.39728 1.10211 0.91286 0.92167 1.25740 0.96488 1.03504 0.91940 1.70810 1.36855 1.16838 1.30286 0.83801 0.76380 0.75613 0.75378 1.20995 1.20773 1.21744 1.60575 1.32723 1.32709 1.05189 1.21378 0.99186 0.93460 0.89604 1.20922 1.04360 0.90061 0.94597 1.21622 1.04039 0.90047 0.97153 1.22969 0.92844 1.03590 1.02185 1.22987 0.97983 0.97962 1.02898 1.22966 0.92487 1.03350 1.02364 1.22952 0.97878 0.96431 1.02011 0.94301 0.92743 0.95748 0.92292 0.84461 0.95838 0.91419 0.88119 0.88477 0.89154 0.89174 0.88519 0.88474 0.89645 0.90001 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.03 37.16 0.34 -2.72 16 2 C 0.18 4.40 2.18 -68.87 -0.15 4.25 16 3 H 0.00 -0.01 6.30 -51.93 -0.33 -0.34 16 4 C -0.60 -16.87 8.92 -34.44 -0.31 -17.18 16 5 H 0.06 1.83 7.90 -52.48 -0.41 1.41 16 6 C 0.03 0.81 5.43 -17.82 -0.10 0.71 16 7 N -0.91 -28.35 13.70 55.43 0.76 -27.59 16 8 Si 1.06 25.99 25.29 -169.99 -4.30 21.69 16 9 H -0.28 -6.63 6.81 56.52 0.38 -6.25 16 10 H -0.28 -6.50 6.36 56.52 0.36 -6.14 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 N -0.68 -14.20 5.22 -107.96 -0.56 -14.76 16 13 C 0.09 1.65 4.68 -3.83 -0.02 1.63 16 14 C -0.10 -1.47 2.51 -154.51 -0.39 -1.86 16 15 C -0.11 -1.38 5.85 -90.62 -0.53 -1.91 16 16 C -0.18 -2.10 9.92 -26.69 -0.26 -2.36 16 17 C -0.18 -2.15 9.92 -26.70 -0.26 -2.42 16 18 C -0.17 -2.50 9.60 -26.69 -0.26 -2.76 16 19 C -0.16 -2.26 9.65 -26.69 -0.26 -2.51 16 20 H 0.04 0.88 4.40 -51.93 -0.23 0.66 16 21 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 22 H 0.02 0.48 7.35 -51.93 -0.38 0.10 16 23 H 0.27 8.25 8.72 -40.82 -0.36 7.89 16 24 H 0.34 7.11 6.15 -39.29 -0.24 6.87 16 25 H 0.02 0.43 6.82 -51.93 -0.35 0.08 16 26 H 0.07 1.20 6.12 -51.93 -0.32 0.88 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 1.23 6.75 -51.92 -0.35 0.88 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.26 6.75 -51.93 -0.35 0.91 16 32 H 0.10 1.52 6.35 -51.93 -0.33 1.19 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.81 7.58 -51.93 -0.39 1.42 16 LS Contribution 272.20 15.07 4.10 4.10 Total: -1.00 -29.41 272.20 -7.63 -37.05 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.44 Total: 6.63 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.20 Total: -27.12 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.20 Total: -42.35 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.30 Total: 21.69 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.41 -7.63 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228775430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.732 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds