Wall clock time and date at job start Mon Mar 30 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47378 * 2 1 4 4 C 1.50704 * 109.46743 * 119.99558 * 2 1 3 5 5 H 1.08001 * 119.99522 * 120.00421 * 4 2 1 6 6 C 1.37872 * 120.00349 * 299.99995 * 4 2 1 7 7 N 1.31513 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99914 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47333 * 89.99762 * 8 6 4 10 10 H 1.48492 * 109.46944 * 209.99776 * 8 6 4 11 11 H 1.48496 * 109.46819 * 329.99710 * 8 6 4 12 12 N 1.46900 * 109.47402 * 239.99737 * 2 1 3 13 13 C 1.46906 * 110.99604 * 84.99986 * 12 2 1 14 14 C 1.53008 * 109.46609 * 179.97438 * 13 12 2 15 15 C 1.50700 * 109.46695 * 180.02562 * 14 13 12 16 16 C 1.30525 * 124.44876 * 95.03010 * 15 14 13 17 17 C 1.51101 * 111.10317 * 180.22138 * 16 15 14 18 18 C 1.54803 * 104.64610 * 343.19479 * 17 16 15 19 19 C 1.51099 * 124.44617 * 274.99688 * 15 14 13 20 20 H 1.09007 * 109.46630 * 60.00120 * 1 2 3 21 21 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47241 * 300.00160 * 1 2 3 23 23 H 0.97001 * 120.00154 * 180.02562 * 7 6 4 24 24 H 1.00896 * 110.99783 * 321.05158 * 12 2 1 25 25 H 1.08994 * 109.46666 * 60.00557 * 13 12 2 26 26 H 1.08995 * 109.47198 * 299.99657 * 13 12 2 27 27 H 1.08994 * 109.46934 * 60.00106 * 14 13 12 28 28 H 1.08996 * 109.46889 * 300.00272 * 14 13 12 29 29 H 1.08002 * 124.44516 * 359.94607 * 16 15 14 30 30 H 1.08996 * 110.39014 * 102.12741 * 17 16 15 31 31 H 1.08993 * 110.38575 * 224.50514 * 17 16 15 32 32 H 1.09005 * 111.24700 * 266.87567 * 18 17 16 33 33 H 1.08994 * 110.89817 * 142.88949 * 18 17 16 34 34 H 1.08999 * 110.39225 * 315.27634 * 19 15 14 35 35 H 1.09001 * 110.38605 * 77.53842 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9952 3.9067 11 1 0.8471 2.1765 1.4920 12 7 2.0198 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5964 -0.5330 -3.5741 15 6 2.6614 0.4060 -4.7511 16 6 3.7323 1.0547 -5.1198 17 6 3.4577 1.9137 -6.3322 18 6 2.1356 1.3575 -6.9145 19 6 1.4956 0.7194 -5.6597 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.9024 -0.5282 4.4376 24 1 1.4496 -1.4979 -1.4100 25 1 2.7589 1.0461 -2.1181 26 1 1.0872 0.6162 -2.5525 27 1 1.9204 -1.3568 -3.8029 28 1 3.5918 -0.9263 -3.3681 29 1 4.6880 0.9897 -4.6209 30 1 3.3374 2.9566 -6.0393 31 1 4.2634 1.8131 -7.0592 32 1 2.3266 0.6065 -7.6811 33 1 1.5133 2.1629 -7.3046 34 1 0.9658 -0.1949 -5.9270 35 1 0.8171 1.4234 -5.1778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229067706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:05 Heat of formation + Delta-G solvation = -13.852314 kcal Electronic energy + Delta-G solvation = -13535.538619 eV Core-core repulsion = 11339.362402 eV Total energy + Delta-G solvation = -2196.176218 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70490 -38.04379 -34.90958 -33.25347 -30.52959 -29.24735 -27.28467 -26.97904 -23.29945 -22.12227 -21.65167 -18.90318 -18.72151 -17.00448 -16.51730 -16.36704 -16.16873 -15.31002 -15.05609 -14.54064 -14.02626 -13.71376 -13.57138 -13.45298 -12.90634 -12.84318 -12.53334 -12.43539 -12.03232 -11.99797 -11.97858 -11.86796 -11.65142 -11.43280 -11.19264 -10.75651 -9.54101 -9.04339 -8.27843 -6.30510 1.28476 1.31135 1.34598 1.44737 2.31514 3.06042 3.44538 3.72082 3.86943 4.18829 4.22790 4.36505 4.41431 4.44567 4.54150 4.59982 4.70190 4.71264 4.80251 4.89209 4.93217 5.00662 5.05141 5.13181 5.21598 5.26230 5.36555 5.40120 5.65575 5.76487 6.01723 6.06430 6.67764 6.74492 6.78087 7.34710 8.89707 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057156 B = 0.005883 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.773363 B = 4758.213132 C = 4872.912252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.186 3.814 3 H 0.024 0.976 4 C -0.506 4.506 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.297 1.297 11 H -0.253 1.253 12 N -0.688 5.688 13 C 0.071 3.929 14 C -0.062 4.062 15 C -0.141 4.141 16 C -0.180 4.180 17 C -0.098 4.098 18 C -0.120 4.120 19 C -0.096 4.096 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.036 0.964 23 H 0.266 0.734 24 H 0.338 0.662 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 6.081 -20.433 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.076 3.924 3 H 0.042 0.958 4 C -0.545 4.545 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.225 1.225 11 H -0.177 1.177 12 N -0.318 5.318 13 C -0.058 4.058 14 C -0.100 4.100 15 C -0.142 4.142 16 C -0.198 4.198 17 C -0.135 4.135 18 C -0.158 4.158 19 C -0.133 4.133 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.012 6.163 -20.102 21.122 hybrid contribution -1.074 0.403 0.742 1.366 sum -3.086 6.566 -19.360 20.675 Atomic orbital electron populations 1.22703 0.99281 1.01537 0.99928 1.19414 0.90169 0.93958 0.88853 0.95787 1.21293 1.30356 1.12570 0.90254 0.94665 1.25821 0.97584 1.00090 0.95329 1.70046 1.47987 1.42617 0.98545 0.85791 0.79116 0.79873 0.77169 1.19070 1.22508 1.17704 1.60449 1.58220 1.09799 1.03345 1.21867 0.98764 0.95276 0.89936 1.20236 1.02120 0.96764 0.90881 1.22074 0.96548 0.98581 0.96992 1.23372 0.98396 0.98664 0.99374 1.21384 0.98202 0.98761 0.95121 1.22485 0.96118 1.00551 0.96597 1.21351 0.96195 1.01013 0.94766 0.92254 0.92399 0.94533 0.92548 0.84437 0.92988 0.95334 0.90683 0.91479 0.86362 0.90509 0.90269 0.90466 0.89741 0.90790 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.27 8.64 71.98 0.62 -6.65 16 2 C 0.19 8.82 2.17 44.17 0.10 8.91 16 3 H 0.02 1.19 6.86 -2.39 -0.02 1.17 16 4 C -0.51 -29.73 9.42 25.60 0.24 -29.49 16 5 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 6 C 0.01 0.50 5.45 84.65 0.46 0.96 16 7 N -0.95 -60.61 13.96 21.45 0.30 -60.32 16 8 Si 0.95 45.56 24.37 68.60 1.67 47.23 16 9 H -0.26 -11.91 6.87 99.48 0.68 -11.23 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 12 N -0.69 -28.19 6.23 -495.42 -3.09 -31.28 16 13 C 0.07 2.36 5.47 86.30 0.47 2.83 16 14 C -0.06 -1.71 5.91 29.85 0.18 -1.53 16 15 C -0.14 -3.37 5.41 -15.87 -0.09 -3.46 16 16 C -0.18 -4.06 10.58 26.26 0.28 -3.78 16 17 C -0.10 -1.69 6.82 30.59 0.21 -1.49 16 18 C -0.12 -1.87 7.20 31.77 0.23 -1.65 16 19 C -0.10 -1.87 6.76 30.53 0.21 -1.67 16 20 H 0.06 2.05 7.45 -2.38 -0.02 2.04 16 21 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 22 H 0.04 1.57 3.27 -2.39 -0.01 1.56 16 23 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.34 12.82 8.47 -89.70 -0.76 12.06 16 25 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 26 H 0.03 0.89 7.44 -2.39 -0.02 0.88 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 29 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.77 278.10 2.00 -63.78 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.21 Total: 17.59 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 2.90 Total: -37.00 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -2.79 Total: -91.59 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -65.77 2.00 -63.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229067706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.923 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds