Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.50696 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.30522 * 124.44941 * 94.70381 * 15 14 13 17 17 C 1.51100 * 111.10832 * 179.87686 * 16 15 14 18 18 C 1.54638 * 104.77878 * 343.93316 * 17 16 15 19 19 C 1.51108 * 124.44513 * 274.99867 * 15 14 13 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 25 25 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 26 26 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 27 27 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 28 28 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 29 29 H 1.08007 * 124.44380 * 359.97438 * 16 15 14 30 30 H 1.09000 * 110.52719 * 225.02045 * 17 16 15 31 31 H 1.09001 * 110.29058 * 102.72084 * 17 16 15 32 32 H 1.09001 * 111.03569 * 266.40790 * 18 17 16 33 33 H 1.09004 * 111.03949 * 142.47238 * 18 17 16 34 34 H 1.08998 * 110.39095 * 315.22929 * 19 15 14 35 35 H 1.08995 * 110.38669 * 77.49549 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6599 0.4060 4.7515 16 6 1.7140 0.5420 5.6405 17 6 2.0954 1.5609 6.6892 18 6 3.6226 1.7410 6.5272 19 6 3.8260 1.3183 5.0537 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 1.4496 -1.4978 1.4101 25 1 2.7588 1.0463 2.1182 26 1 1.0870 0.6164 2.5525 27 1 1.9183 -1.3563 3.8031 28 1 3.5904 -0.9270 3.3692 29 1 0.7819 -0.0033 5.6291 30 1 1.8605 1.1891 7.6865 31 1 1.5803 2.5037 6.5051 32 1 4.1682 1.0815 7.2022 33 1 3.9124 2.7807 6.6796 34 1 4.7677 0.7816 4.9390 35 1 3.8049 2.1905 4.4003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229067720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -3.200762 kcal Electronic energy + Delta-G solvation = -13468.953161 eV Core-core repulsion = 11273.238830 eV Total energy + Delta-G solvation = -2195.714332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.70787 -36.09727 -33.11886 -31.25614 -28.62364 -28.12189 -25.67082 -25.05257 -21.83019 -20.76015 -20.15928 -17.83373 -16.25335 -15.59316 -15.33845 -14.65803 -14.45912 -13.76017 -13.20420 -12.71597 -12.44609 -11.91725 -11.79735 -11.66704 -11.49883 -11.18941 -11.11074 -10.99906 -10.86880 -10.79410 -10.52261 -10.25281 -10.07347 -9.81479 -8.98789 -8.50522 -8.32656 -7.18025 -5.94941 -3.98148 2.33608 3.35323 3.41117 3.45588 4.46783 4.62106 4.67416 4.99197 5.17375 5.36439 5.45320 5.50539 5.61190 5.69020 5.77364 5.83821 5.91617 5.97309 6.06299 6.12672 6.21363 6.44249 6.58081 6.72193 6.75715 6.88350 7.09636 7.15451 7.42223 7.77476 7.92595 8.31965 8.59263 8.67045 9.09261 9.67098 11.12182 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.065346 B = 0.005381 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.384385 B = 5202.132733 C = 5320.252064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.686 5.686 13 C 0.068 3.932 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.185 4.185 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.096 4.096 20 H 0.027 0.973 21 H 0.004 0.996 22 H 0.088 0.912 23 H 0.259 0.741 24 H 0.324 0.676 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 0.785 15.099 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.316 5.316 13 C -0.062 4.062 14 C -0.110 4.110 15 C -0.118 4.118 16 C -0.203 4.203 17 C -0.133 4.133 18 C -0.163 4.163 19 C -0.133 4.133 20 H 0.046 0.954 21 H 0.023 0.977 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.899 0.993 14.779 15.093 hybrid contribution -0.819 -0.260 -0.698 1.107 sum 2.080 0.733 14.080 14.252 Atomic orbital electron populations 1.22423 1.00765 0.99140 1.00442 1.19170 0.89583 0.94406 0.86578 0.94983 1.21181 1.30067 1.12405 0.89643 0.91950 1.24966 0.95360 0.95248 0.99056 1.69892 1.37378 1.23313 1.23276 0.86499 0.78427 0.80023 0.82431 1.20774 1.19932 1.21440 1.60812 1.58015 1.09151 1.03589 1.21804 0.98242 0.95908 0.90203 1.20405 1.02469 0.96230 0.91865 1.22082 0.96255 0.97275 0.96180 1.23041 0.99201 1.00377 0.97703 1.21280 0.95693 0.98222 0.98084 1.22440 0.96065 1.01174 0.96582 1.21322 0.97355 0.98551 0.96028 0.95374 0.97671 0.89293 0.93115 0.86011 0.91863 0.96496 0.91792 0.90583 0.86259 0.91699 0.91144 0.91371 0.91224 0.91185 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.94 37.16 0.33 -3.84 16 2 C 0.21 5.45 2.57 -68.87 -0.18 5.27 16 3 H 0.03 0.91 7.80 -51.92 -0.40 0.51 16 4 C -0.49 -13.98 8.84 -34.44 -0.30 -14.29 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.17 11.32 55.43 0.63 -25.54 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 N -0.69 -15.04 6.23 -107.95 -0.67 -15.71 16 13 C 0.07 1.28 5.47 -3.82 -0.02 1.26 16 14 C -0.07 -1.10 5.91 -27.89 -0.16 -1.26 16 15 C -0.12 -1.60 5.41 -100.73 -0.55 -2.15 16 16 C -0.19 -2.34 10.59 -35.70 -0.38 -2.71 16 17 C -0.10 -1.01 6.81 -26.83 -0.18 -1.19 16 18 C -0.13 -1.26 7.19 -25.01 -0.18 -1.44 16 19 C -0.10 -1.15 6.76 -26.82 -0.18 -1.33 16 20 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 21 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 22 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.32 6.70 8.47 -39.30 -0.33 6.37 16 25 H 0.06 1.23 8.06 -51.93 -0.42 0.82 16 26 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 27 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 28 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 29 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -28.90 284.91 -8.68 -37.59 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.02 Total: 2.86 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.90 Total: -20.25 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.05 Total: -41.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.90 -8.68 -37.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229067720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.385 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds