Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.50696 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.30522 * 124.44941 * 94.70381 * 15 14 13 17 17 C 1.51100 * 111.10832 * 179.87686 * 16 15 14 18 18 C 1.54638 * 104.77878 * 343.93316 * 17 16 15 19 19 C 1.51108 * 124.44513 * 274.99867 * 15 14 13 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 25 25 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 26 26 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 27 27 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 28 28 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 29 29 H 1.08007 * 124.44380 * 359.97438 * 16 15 14 30 30 H 1.09000 * 110.52719 * 225.02045 * 17 16 15 31 31 H 1.09001 * 110.29058 * 102.72084 * 17 16 15 32 32 H 1.09001 * 111.03569 * 266.40790 * 18 17 16 33 33 H 1.09004 * 111.03949 * 142.47238 * 18 17 16 34 34 H 1.08998 * 110.39095 * 315.22929 * 19 15 14 35 35 H 1.08995 * 110.38669 * 77.49549 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6599 0.4060 4.7515 16 6 1.7140 0.5420 5.6405 17 6 2.0954 1.5609 6.6892 18 6 3.6226 1.7410 6.5272 19 6 3.8260 1.3183 5.0537 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 1.4496 -1.4978 1.4101 25 1 2.7588 1.0463 2.1182 26 1 1.0870 0.6164 2.5525 27 1 1.9183 -1.3563 3.8031 28 1 3.5904 -0.9270 3.3692 29 1 0.7819 -0.0033 5.6291 30 1 1.8605 1.1891 7.6865 31 1 1.5803 2.5037 6.5051 32 1 4.1682 1.0815 7.2022 33 1 3.9124 2.7807 6.6796 34 1 4.7677 0.7816 4.9390 35 1 3.8049 2.1905 4.4003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229067720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -19.878484 kcal Electronic energy + Delta-G solvation = -13469.676362 eV Core-core repulsion = 11273.238830 eV Total energy + Delta-G solvation = -2196.437532 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69982 -37.87537 -34.94667 -32.88376 -30.05214 -29.21063 -27.30513 -26.93208 -23.28289 -22.17242 -21.63233 -18.88846 -18.32869 -16.84859 -16.66425 -16.20450 -15.93630 -15.35852 -14.98949 -14.20211 -13.64015 -13.59936 -13.31243 -12.99335 -12.86259 -12.74965 -12.63183 -12.48447 -12.19950 -12.08261 -11.99086 -11.89963 -11.66995 -11.62242 -11.05284 -10.49454 -9.53540 -8.99567 -8.10089 -6.21936 1.30755 1.43872 1.44260 1.55586 2.44460 3.18029 3.55088 3.72541 3.90436 4.20316 4.22694 4.40068 4.45142 4.56706 4.64313 4.73169 4.84674 4.87987 4.89317 4.97371 5.04447 5.06667 5.12177 5.19496 5.26155 5.39132 5.41024 5.67443 5.73167 5.80217 6.07371 6.25741 6.62941 6.82047 6.93635 7.48283 8.95729 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.065346 B = 0.005381 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.384385 B = 5202.132733 C = 5320.252064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.268 1.268 11 H -0.283 1.283 12 N -0.689 5.689 13 C 0.074 3.926 14 C -0.060 4.060 15 C -0.143 4.143 16 C -0.178 4.178 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.099 4.099 20 H 0.034 0.966 21 H 0.022 0.978 22 H 0.062 0.938 23 H 0.261 0.739 24 H 0.332 0.668 25 H 0.048 0.952 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 0.265 16.146 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.203 1.203 10 H -0.192 1.192 11 H -0.208 1.208 12 N -0.319 5.319 13 C -0.056 4.056 14 C -0.097 4.097 15 C -0.143 4.143 16 C -0.196 4.196 17 C -0.134 4.134 18 C -0.157 4.157 19 C -0.137 4.137 20 H 0.053 0.947 21 H 0.041 0.959 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.100 0.467 15.848 16.155 hybrid contribution -0.908 -0.074 -0.972 1.332 sum 2.192 0.394 14.875 15.041 Atomic orbital electron populations 1.22228 0.99945 0.99331 0.99965 1.18952 0.90129 0.92618 0.87798 0.98423 1.21467 1.30492 1.12549 0.91032 0.92599 1.25769 0.95399 0.95902 1.02033 1.70020 1.38026 1.24380 1.24039 0.85465 0.77914 0.79060 0.78607 1.20312 1.19220 1.20814 1.60682 1.57854 1.09723 1.03632 1.21789 0.97837 0.95446 0.90483 1.20231 1.02172 0.96421 0.90916 1.22078 0.97759 0.98250 0.96231 1.23355 0.98731 0.99892 0.97582 1.21351 0.96038 0.97773 0.98254 1.22453 0.95853 1.02278 0.95084 1.21366 0.96915 0.97919 0.97454 0.94702 0.95891 0.91914 0.92968 0.85049 0.93361 0.96857 0.90946 0.90924 0.85869 0.89909 0.90661 0.90308 0.89831 0.91022 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 8.94 71.98 0.64 -7.08 16 2 C 0.21 11.25 2.57 44.17 0.11 11.36 16 3 H 0.00 -0.13 7.80 -2.38 -0.02 -0.15 16 4 C -0.52 -29.50 8.84 25.60 0.23 -29.27 16 5 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.92 -54.36 11.32 21.45 0.24 -54.12 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 N -0.69 -30.27 6.23 -495.44 -3.09 -33.36 16 13 C 0.07 2.77 5.47 86.30 0.47 3.24 16 14 C -0.06 -1.77 5.91 29.85 0.18 -1.60 16 15 C -0.14 -3.72 5.41 -15.87 -0.09 -3.80 16 16 C -0.18 -4.13 10.59 26.27 0.28 -3.86 16 17 C -0.10 -1.79 6.81 30.53 0.21 -1.59 16 18 C -0.12 -2.10 7.19 31.71 0.23 -1.88 16 19 C -0.10 -2.28 6.76 30.54 0.21 -2.07 16 20 H 0.03 1.63 8.13 -2.39 -0.02 1.61 16 21 H 0.02 1.01 7.45 -2.39 -0.02 0.99 16 22 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 24 H 0.33 13.57 8.47 -89.70 -0.76 12.81 16 25 H 0.05 1.93 8.06 -2.39 -0.02 1.91 16 26 H 0.01 0.51 7.44 -2.39 -0.02 0.49 16 27 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 28 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -61.04 284.91 2.38 -58.66 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.28 Total: 17.91 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 2.92 Total: -35.69 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.85 Total: -87.48 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.04 2.38 -58.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229067720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.783 kcal (2) G-P(sol) polarization free energy of solvation -61.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds