Wall clock time and date at job start Mon Mar 30 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30562 * 1 3 3 Si 1.86806 * 120.00025 * 2 1 4 4 H 1.48494 * 109.47162 * 240.00245 * 3 2 1 5 5 H 1.48500 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46787 * 120.00169 * 3 2 1 7 7 C 1.40382 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99983 * 164.09171 * 7 2 1 9 9 C 1.40744 * 119.99957 * 343.80361 * 7 2 1 10 10 C 1.40763 * 120.61463 * 334.29099 * 9 7 2 11 11 C 1.37674 * 119.85214 * 179.75874 * 10 9 7 12 12 Cl 1.73596 * 119.40488 * 180.25536 * 11 10 9 13 13 C 1.38859 * 121.18931 * 0.52414 * 11 10 9 14 14 C 1.37948 * 121.29812 * 359.73350 * 13 11 10 15 15 C 1.39720 * 120.03808 * 0.02562 * 14 13 11 16 16 C 1.46537 * 120.57849 * 179.97438 * 15 14 13 17 17 O 1.21351 * 119.99914 * 0.02562 * 16 15 14 18 18 H 0.97003 * 119.99862 * 0.02562 * 1 2 3 19 19 H 1.08003 * 120.07076 * 359.97438 * 10 9 7 20 20 H 1.08010 * 119.34947 * 179.70663 * 13 11 10 21 21 H 1.08003 * 119.98391 * 179.97438 * 14 13 11 22 22 H 1.07998 * 120.00270 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 3.0933 1.6965 -1.2125 5 1 1.2747 2.7465 0.0006 6 1 3.0934 1.6963 1.2125 7 6 2.0076 -1.2157 -0.0005 8 1 3.0565 -1.2335 -0.2569 9 6 1.3457 -2.4106 0.3389 10 6 0.2091 -2.3896 1.1690 11 6 -0.4291 -3.5673 1.4870 12 17 -1.8338 -3.5273 2.5062 13 6 0.0339 -4.7871 1.0117 14 6 1.1462 -4.8643 0.1995 15 6 1.8315 -3.7011 -0.1604 16 6 3.0147 -3.7694 -1.0221 17 8 3.4071 -4.8428 -1.4301 18 1 -0.4850 0.8401 -0.0004 19 1 -0.1636 -1.4513 1.5526 20 1 -0.4870 -5.6934 1.2837 21 1 1.4881 -5.8245 -0.1578 22 1 3.5376 -2.8644 -1.2941 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238590366.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:08 Heat of formation + Delta-G solvation = -52.830455 kcal Electronic energy + Delta-G solvation = -11134.900115 eV Core-core repulsion = 8872.524897 eV Total energy + Delta-G solvation = -2262.375218 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 210.019 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.03296 -38.60902 -37.15785 -35.74185 -32.02761 -31.31345 -27.63364 -25.16230 -23.01975 -21.22660 -19.41391 -17.94441 -16.84609 -16.64625 -16.15184 -15.08016 -14.89063 -14.67131 -14.50969 -13.90839 -13.40965 -13.29862 -12.83080 -12.53960 -12.12122 -12.04796 -11.87371 -11.47035 -11.17234 -10.32495 -9.62440 -9.35794 -8.88392 -6.62266 0.04205 0.89577 1.40444 1.43298 1.55148 1.57628 1.85726 2.14836 2.58333 3.49159 3.90013 4.27426 4.54135 4.70478 4.97047 4.98803 5.06412 5.25547 5.66993 5.76035 5.83698 5.98807 6.30655 6.53456 6.66811 6.94747 8.03865 Molecular weight = 210.02amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.014285 C = 0.008958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.414345 B = 1959.686420 C = 3125.096494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.038 3.962 3 Si 0.991 3.009 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.443 4.443 8 H 0.109 0.891 9 C 0.130 3.870 10 C -0.185 4.185 11 C 0.019 3.981 12 Cl -0.096 7.096 13 C -0.264 4.264 14 C -0.014 4.014 15 C -0.347 4.347 16 C 0.396 3.604 17 O -0.549 6.549 18 H 0.303 0.697 19 H 0.124 0.876 20 H 0.122 0.878 21 H 0.117 0.883 22 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 3.202 2.021 3.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.469 4.469 8 H 0.127 0.873 9 C 0.126 3.874 10 C -0.205 4.205 11 C -0.008 4.008 12 Cl -0.068 7.068 13 C -0.284 4.284 14 C -0.032 4.032 15 C -0.350 4.350 16 C 0.266 3.734 17 O -0.433 6.433 18 H 0.114 0.886 19 H 0.141 0.859 20 H 0.140 0.860 21 H 0.135 0.865 22 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.025 2.816 1.892 3.392 hybrid contribution -0.287 0.566 0.198 0.665 sum -0.312 3.382 2.089 3.988 Atomic orbital electron populations 1.69704 1.09600 1.32512 1.28892 1.27100 0.95511 1.05252 0.90562 0.85072 0.78806 0.74301 0.80785 1.17474 1.19189 1.17932 1.20199 0.98919 0.90927 1.36811 0.87345 1.18864 0.89807 0.91885 0.86836 1.21295 0.99965 0.95986 1.03252 1.21004 0.89169 0.95551 0.95112 1.98268 1.41590 1.99010 1.67907 1.20300 1.02598 0.95694 1.09800 1.20966 0.92335 0.97255 0.92676 1.21654 1.06161 0.94020 1.13178 1.23647 0.82490 0.91812 0.75493 1.90372 1.66492 1.35325 1.51090 0.88571 0.85865 0.85978 0.86472 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -34.99 10.96 21.90 0.24 -34.75 14 2 C 0.04 1.58 5.18 85.40 0.44 2.02 14 3 Si 0.99 31.20 29.59 68.60 2.03 33.23 14 4 H -0.25 -7.58 7.11 99.48 0.71 -6.88 14 5 H -0.27 -8.12 7.11 99.48 0.71 -7.41 14 6 H -0.26 -7.92 7.11 99.48 0.71 -7.22 14 7 C -0.44 -19.84 8.51 23.40 0.20 -19.64 14 8 H 0.11 4.38 6.68 -2.91 -0.02 4.37 14 9 C 0.13 6.29 5.73 -19.85 -0.11 6.17 14 10 C -0.19 -8.90 8.45 22.75 0.19 -8.71 14 11 C 0.02 0.83 6.30 22.29 0.14 0.97 14 12 Cl -0.10 -3.69 28.91 -2.72 -0.08 -3.77 14 13 C -0.26 -11.44 9.74 22.35 0.22 -11.22 14 14 C -0.01 -0.62 9.60 22.56 0.22 -0.40 14 15 C -0.35 -16.27 6.06 -18.56 -0.11 -16.38 14 16 C 0.40 17.19 11.04 69.99 0.77 17.96 14 17 O -0.55 -25.97 17.19 -3.25 -0.06 -26.02 14 18 H 0.30 12.03 8.29 -92.71 -0.77 11.27 14 19 H 0.12 6.06 6.22 -2.91 -0.02 6.04 14 20 H 0.12 4.69 8.06 -2.91 -0.02 4.67 14 21 H 0.12 4.98 7.66 -2.91 -0.02 4.96 14 22 H 0.11 4.09 6.69 -2.91 -0.02 4.07 14 Total: -1.00 -52.03 222.17 5.34 -46.69 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.25 Total: 13.87 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 1.95 Total: -29.24 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.24 Total: -34.75 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.02 kcal Atomic # 14 Polarization: 31.20 SS G_CDS: 2.03 Total: 33.23 kcal Atomic # 17 Polarization: -3.69 SS G_CDS: -0.08 Total: -3.77 kcal Total: -52.03 5.34 -46.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238590366.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.144 kcal (2) G-P(sol) polarization free energy of solvation -52.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds