Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29509 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48505 * 109.47262 * 274.83456 * 3 2 1 5 5 H 1.48493 * 109.47661 * 34.83429 * 3 2 1 6 6 H 1.48497 * 109.47323 * 154.84009 * 3 2 1 7 7 C 1.46532 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00229 * 164.79776 * 7 2 1 9 9 C 1.40366 * 119.99887 * 344.79449 * 7 2 1 10 10 C 1.41368 * 120.67977 * 156.60591 * 9 7 2 11 11 N 1.31352 * 120.44789 * 180.02562 * 10 9 7 12 12 C 1.32139 * 122.08621 * 0.02562 * 11 10 9 13 13 N 1.48007 * 119.33017 * 179.97438 * 12 11 10 14 14 O 1.31703 * 120.00096 * 179.97438 * 13 12 11 15 15 O 1.31695 * 119.99964 * 359.97438 * 13 12 11 16 16 C 1.39284 * 121.34113 * 359.97438 * 12 11 10 17 17 O 1.35906 * 120.31352 * 179.97438 * 16 12 11 18 18 C 1.38342 * 119.37273 * 359.97438 * 16 12 11 19 19 H 0.96996 * 119.99518 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.77387 * 359.74205 * 10 9 7 21 21 H 0.96702 * 114.00088 * 270.01945 * 17 16 12 22 22 H 1.07997 * 120.94560 * 180.02562 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 2.3743 2.1055 -1.3951 5 1 1.4814 2.6211 0.7997 6 1 3.5740 1.4130 0.5952 7 6 2.0278 -1.2690 -0.0006 8 1 3.0794 -1.2853 -0.2458 9 6 1.3628 -2.4635 0.3177 10 6 1.8609 -3.7080 -0.1312 11 7 1.2346 -4.8230 0.1690 12 6 0.1284 -4.8341 0.8916 13 7 -0.5276 -6.1260 1.1932 14 8 -1.6304 -6.1525 1.9127 15 8 -0.0087 -7.2492 0.7420 16 6 -0.4327 -3.6546 1.3754 17 8 -1.5715 -3.6903 2.1163 18 6 0.1800 -2.4465 1.0945 19 1 -0.4849 0.8400 0.0004 20 1 2.7599 -3.7419 -0.7288 21 1 -2.3828 -3.6279 1.5938 22 1 -0.2329 -1.5168 1.4571 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238684707.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = -7.947979 kcal Electronic energy + Delta-G solvation = -13250.515834 eV Core-core repulsion = 10581.670453 eV Total energy + Delta-G solvation = -2668.845381 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.42651 -37.01841 -36.46791 -34.88894 -32.85216 -31.46946 -29.66300 -27.31082 -24.44249 -22.32551 -21.54857 -18.72762 -17.53895 -17.06850 -16.93033 -15.94397 -15.25775 -14.88390 -14.17284 -13.86669 -13.13824 -12.76527 -12.42497 -12.02530 -11.94332 -11.44170 -11.01118 -10.58506 -10.21894 -9.91483 -9.72351 -9.41923 -8.95553 -8.78573 -8.38371 -7.84972 -5.43073 0.66056 2.09541 2.30131 2.48134 2.57532 2.57726 2.69541 3.15302 3.65095 4.67405 4.90119 5.45914 5.73935 5.85283 6.03156 6.30710 6.48770 6.90433 6.97137 7.26344 7.39754 7.50134 7.73059 8.13989 8.30401 8.87979 8.90557 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.061593 B = 0.008877 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.490361 B = 3153.488174 C = 3541.660353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.055 3.945 3 Si 0.937 3.063 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.246 1.246 7 C -0.341 4.341 8 H 0.113 0.887 9 C 0.058 3.942 10 C 0.035 3.965 11 N -0.402 5.402 12 C 0.009 3.991 13 N 0.040 4.960 14 O -0.260 6.260 15 O -0.263 6.263 16 C 0.159 3.841 17 O -0.484 6.484 18 C -0.187 4.187 19 H 0.309 0.691 20 H 0.155 0.845 21 H 0.388 0.612 22 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 9.293 -1.633 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.169 1.169 7 C -0.368 4.368 8 H 0.131 0.869 9 C 0.052 3.948 10 C -0.145 4.145 11 N -0.114 5.114 12 C -0.209 4.209 13 N 0.484 4.516 14 O -0.427 6.427 15 O -0.434 6.434 16 C 0.109 3.891 17 O -0.293 6.293 18 C -0.211 4.211 19 H 0.122 0.878 20 H 0.173 0.827 21 H 0.245 0.755 22 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.735 8.774 -1.397 9.296 hybrid contribution -0.682 1.041 -0.060 1.246 sum 2.053 9.815 -1.458 10.133 Atomic orbital electron populations 1.69051 1.09372 1.33072 1.20774 1.27980 0.95069 1.03531 0.91243 0.85760 0.80956 0.77060 0.80462 1.18059 1.18774 1.16901 1.21609 0.97677 0.89186 1.28302 0.86870 1.18722 0.92004 0.93982 0.90127 1.22711 1.01712 0.85670 1.04430 1.65647 1.04771 1.32758 1.08184 1.20163 1.01772 0.80136 1.18804 1.49931 1.00464 1.03378 0.97837 1.96142 1.10774 1.95900 1.39931 1.96133 1.68724 1.19755 1.58765 1.18608 0.89007 0.90446 0.91032 1.84738 1.14141 1.95885 1.34529 1.21893 1.00294 0.95846 1.03107 0.87762 0.82749 0.75541 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -12.94 10.92 55.98 0.61 -12.32 14 2 C 0.06 0.96 5.39 -15.19 -0.08 0.88 14 3 Si 0.94 12.56 29.67 -169.99 -5.04 7.52 14 4 H -0.26 -3.41 7.11 56.52 0.40 -3.01 14 5 H -0.26 -3.53 7.11 56.52 0.40 -3.13 14 6 H -0.25 -3.30 7.11 56.52 0.40 -2.90 14 7 C -0.34 -6.43 9.35 -35.44 -0.33 -6.77 14 8 H 0.11 1.85 7.98 -52.49 -0.42 1.44 14 9 C 0.06 1.24 5.63 -106.66 -0.60 0.64 14 10 C 0.03 0.75 11.00 -16.57 -0.18 0.57 14 11 N -0.40 -10.08 10.02 -9.28 -0.09 -10.17 14 12 C 0.01 0.24 7.85 -145.58 -1.14 -0.90 14 13 N 0.04 1.12 4.98 33.11 0.17 1.28 14 14 O -0.26 -7.05 17.82 -39.28 -0.70 -7.75 14 15 O -0.26 -7.50 19.75 -31.56 -0.62 -8.12 14 16 C 0.16 3.79 6.70 -39.15 -0.26 3.53 14 17 O -0.48 -10.65 11.38 -41.79 -0.48 -11.13 14 18 C -0.19 -4.20 8.83 -38.30 -0.34 -4.54 14 19 H 0.31 4.87 8.27 -40.82 -0.34 4.53 14 20 H 0.16 2.77 8.06 -52.48 -0.42 2.35 14 21 H 0.39 6.84 9.06 45.56 0.41 7.25 14 22 H 0.15 3.22 6.13 -52.49 -0.32 2.90 14 LS Contribution 220.10 15.07 3.32 3.32 Total: -1.00 -28.88 220.10 -5.66 -34.54 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.12 Total: 9.43 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.94 Total: -6.59 kcal Atomic # 7 Polarization: -21.90 SS G_CDS: 0.68 Total: -21.21 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.80 Total: -27.00 kcal Atomic # 14 Polarization: 12.56 SS G_CDS: -5.04 Total: 7.52 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.88 -5.66 -34.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684707.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.593 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds