Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30564 * 1 3 3 Si 1.86795 * 120.00583 * 2 1 4 4 H 1.48501 * 109.47182 * 240.00351 * 3 2 1 5 5 H 1.48503 * 109.46754 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47474 * 119.99746 * 3 2 1 7 7 C 1.40315 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.41277 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.33857 * 120.71807 * 333.80199 * 9 7 2 11 11 C 1.31964 * 120.67764 * 180.02562 * 10 9 7 12 12 O 1.35313 * 118.86711 * 179.72151 * 11 10 9 13 13 N 1.32739 * 122.25859 * 359.97438 * 11 10 9 14 14 C 1.31998 * 121.39751 * 359.97438 * 13 11 10 15 15 C 1.39968 * 119.11759 * 0.02562 * 14 13 11 16 16 C 1.47220 * 121.00574 * 179.97438 * 15 14 13 17 17 O 1.21543 * 119.99895 * 174.09259 * 16 15 14 18 18 O 1.34803 * 120.00503 * 354.09031 * 16 15 14 19 19 H 0.97005 * 119.99390 * 359.97438 * 1 2 3 20 20 H 0.96706 * 114.00402 * 90.00190 * 12 11 10 21 21 H 1.07997 * 120.44291 * 179.97438 * 14 13 11 22 22 H 0.96695 * 117.00446 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2398 1.6176 0.0000 4 1 3.0935 1.6962 -1.2125 5 1 1.2748 2.7464 -0.0006 6 1 3.0935 1.6963 1.2125 7 6 2.0071 -1.2152 -0.0005 8 1 3.0870 -1.2152 -0.0010 9 6 1.3007 -2.4387 -0.0005 10 7 0.0648 -2.5146 0.5079 11 6 -0.5942 -3.6579 0.5080 12 8 -1.8393 -3.6943 1.0365 13 7 -0.0756 -4.7746 0.0118 14 6 1.1359 -4.7968 -0.5116 15 6 1.8867 -3.6159 -0.5416 16 6 3.2424 -3.5935 -1.1150 17 8 3.8363 -2.5393 -1.2300 18 8 3.8253 -4.7422 -1.5125 19 1 -0.4849 0.8401 0.0004 20 1 -2.5427 -3.5081 0.3995 21 1 1.5429 -5.7141 -0.9106 22 1 4.7163 -4.6773 -1.8824 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259671237.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -118.079677 kcal Electronic energy + Delta-G solvation = -13469.274927 eV Core-core repulsion = 10795.653878 eV Total energy + Delta-G solvation = -2673.621050 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.47264 -40.30382 -37.96757 -36.78903 -35.94712 -33.66212 -32.10646 -28.81501 -25.50471 -24.29223 -22.47154 -20.33779 -19.42845 -18.81311 -17.69166 -17.47115 -17.05008 -16.50456 -16.19641 -15.13086 -14.59801 -14.31561 -14.02119 -13.34828 -13.17618 -12.99838 -12.64673 -12.25868 -12.11122 -12.00736 -11.64652 -10.87735 -10.79173 -10.03524 -9.56619 -8.74057 -6.97170 -0.06748 0.78878 1.35658 1.48716 1.51505 1.89664 2.13883 2.44952 2.54741 2.81826 3.49548 3.91595 4.30064 4.50636 4.80500 4.98766 5.13308 5.53908 5.81750 6.07928 6.21261 6.49542 6.61184 6.95724 7.39121 7.78510 8.09513 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.016047 C = 0.009865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.190600 B = 1744.471293 C = 2837.630894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.023 3.977 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.256 1.256 6 H -0.255 1.255 7 C -0.399 4.399 8 H 0.117 0.883 9 C 0.273 3.727 10 N -0.550 5.550 11 C 0.488 3.512 12 O -0.478 6.478 13 N -0.634 5.634 14 C 0.241 3.759 15 C -0.377 4.377 16 C 0.544 3.456 17 O -0.552 6.552 18 O -0.512 6.512 19 H 0.296 0.704 20 H 0.418 0.582 21 H 0.191 0.809 22 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -1.705 -2.921 4.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.202 4.202 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.180 1.180 6 H -0.179 1.179 7 C -0.429 4.429 8 H 0.134 0.866 9 C 0.149 3.851 10 N -0.280 5.280 11 C 0.181 3.819 12 O -0.283 6.283 13 N -0.367 5.367 14 C 0.075 3.925 15 C -0.388 4.388 16 C 0.393 3.607 17 O -0.445 6.445 18 O -0.325 6.325 19 H 0.107 0.893 20 H 0.278 0.722 21 H 0.207 0.793 22 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 1.708 -1.407 -1.839 2.877 hybrid contribution 1.058 0.685 -0.888 1.542 sum 2.766 -0.721 -2.727 3.950 Atomic orbital electron populations 1.69878 1.09339 1.31499 1.25594 1.27314 0.95822 1.05342 0.91714 0.85021 0.78729 0.74158 0.80514 1.18302 1.18002 1.17861 1.20730 0.96619 0.89445 1.36075 0.86566 1.18697 0.86550 0.92608 0.87260 1.68787 1.10780 1.25733 1.22702 1.20798 0.87956 0.85280 0.87838 1.84467 1.12460 1.92632 1.38748 1.67794 1.16205 1.30464 1.22282 1.23227 0.86653 0.96598 0.86064 1.20445 0.97516 0.99108 1.21724 1.20143 0.85695 0.80772 0.74135 1.90747 1.65523 1.32844 1.55376 1.84516 1.37258 1.35147 1.75599 0.89265 0.72205 0.79267 0.71608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.90 11.90 21.88 0.26 -37.64 14 2 C 0.02 1.15 5.48 85.39 0.47 1.62 14 3 Si 1.00 37.25 29.56 68.60 2.03 39.28 14 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 14 5 H -0.26 -8.70 7.11 99.48 0.71 -7.99 14 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 14 7 C -0.40 -21.50 8.14 23.52 0.19 -21.31 14 8 H 0.12 6.25 5.58 -2.92 -0.02 6.23 14 9 C 0.27 14.99 6.42 40.57 0.26 15.25 14 10 N -0.55 -30.30 8.58 -306.43 -2.63 -32.92 14 11 C 0.49 24.29 8.68 180.55 1.57 25.86 14 12 O -0.48 -20.43 13.63 -86.00 -1.17 -21.60 14 13 N -0.63 -29.47 10.43 -312.50 -3.26 -32.73 14 14 C 0.24 10.35 10.89 85.09 0.93 11.27 14 15 C -0.38 -18.11 5.96 -19.51 -0.12 -18.23 14 16 C 0.54 23.19 8.23 70.18 0.58 23.77 14 17 O -0.55 -26.25 14.42 19.70 0.28 -25.97 14 18 O -0.51 -15.66 12.79 -57.15 -0.73 -16.39 14 19 H 0.30 13.38 8.29 -92.70 -0.77 12.61 14 20 H 0.42 13.25 9.06 -74.05 -0.67 12.58 14 21 H 0.19 6.42 7.72 -2.91 -0.02 6.40 14 22 H 0.42 8.32 9.11 -74.06 -0.67 7.64 14 Total: -1.00 -68.35 216.17 -1.37 -69.72 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.03 Total: 20.01 kcal Atomic # 6 Polarization: 34.36 SS G_CDS: 3.88 Total: 38.24 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.63 Total: -103.29 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -1.62 Total: -63.96 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -68.35 -1.37 -69.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259671237.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.360 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds