Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47859 * 110.46979 * 2 1 4 4 C 1.55333 * 106.85658 * 232.96348 * 3 2 1 5 5 C 1.53649 * 101.84772 * 337.97802 * 4 3 2 6 6 H 1.08996 * 111.06911 * 281.65504 * 5 4 3 7 7 C 1.51775 * 115.27968 * 153.55089 * 5 4 3 8 8 C 1.53705 * 107.35338 * 184.98398 * 7 5 4 9 9 C 1.52585 * 111.43716 * 58.13400 * 8 7 5 10 10 H 1.08995 * 109.09575 * 184.70760 * 9 8 7 11 11 C 1.50698 * 109.09389 * 65.68292 * 9 8 7 12 12 H 1.08001 * 120.00534 * 334.94672 * 11 9 8 13 13 C 1.37882 * 119.99535 * 154.94542 * 11 9 8 14 14 N 1.31522 * 119.99817 * 185.88888 * 13 11 9 15 15 Si 1.86800 * 120.00200 * 5.88400 * 13 11 9 16 16 H 1.48498 * 109.47035 * 84.83729 * 15 13 11 17 17 H 1.48498 * 109.46934 * 204.83693 * 15 13 11 18 18 H 1.48502 * 109.46933 * 324.83650 * 15 13 11 19 19 C 1.53776 * 111.38027 * 305.19719 * 9 8 7 20 20 C 1.45821 * 111.00282 * 240.96004 * 2 1 3 21 21 H 1.08995 * 109.25006 * 35.93140 * 20 2 1 22 22 H 1.09004 * 109.46841 * 179.03914 * 1 2 3 23 23 H 1.08997 * 109.47385 * 299.03799 * 1 2 3 24 24 H 1.08998 * 109.46943 * 59.04345 * 1 2 3 25 25 H 1.08995 * 109.54606 * 113.91682 * 3 2 1 26 26 H 1.09006 * 110.61889 * 352.60066 * 3 2 1 27 27 H 1.08994 * 110.95341 * 219.83716 * 4 3 2 28 28 H 1.09001 * 110.95480 * 96.11317 * 4 3 2 29 29 H 1.09005 * 109.81226 * 65.54792 * 7 5 4 30 30 H 1.09001 * 109.91208 * 304.47932 * 7 5 4 31 31 H 1.08996 * 109.07531 * 297.65421 * 8 7 5 32 32 H 1.08999 * 109.08021 * 178.61738 * 8 7 5 33 33 H 0.96991 * 119.99757 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.87512 * 176.74808 * 19 9 8 35 35 H 1.09002 * 109.87932 * 297.74321 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9860 1.3852 0.0000 4 6 2.9824 1.4941 -1.1867 5 6 3.3680 0.0237 -1.4107 6 1 4.0970 -0.3073 -0.6711 7 6 3.8083 -0.3232 -2.8212 8 6 4.0260 -1.8439 -2.8725 9 6 2.7580 -2.6019 -2.4908 10 1 2.9768 -3.6692 -2.4582 11 6 1.6996 -2.3487 -3.5331 12 1 1.7329 -1.4486 -4.1291 13 6 0.6885 -3.2661 -3.7259 14 7 -0.1677 -3.1038 -4.7110 15 14 0.5349 -4.7397 -2.5882 16 1 -0.2353 -4.3532 -1.3789 17 1 -0.1712 -5.8388 -3.2944 18 1 1.8891 -5.1986 -2.1870 19 6 2.2293 -2.1546 -1.1178 20 6 1.9916 -0.6608 -1.1902 21 1 1.3425 -0.4407 -2.0377 22 1 -0.3633 -1.0276 -0.0172 23 1 -0.3634 0.4988 0.8984 24 1 -0.3633 0.5286 -0.8813 25 1 2.5037 1.5812 0.9389 26 1 1.1724 2.0987 -0.1314 27 1 3.8538 2.0879 -0.9108 28 1 2.4941 1.9078 -2.0690 29 1 4.7396 0.1929 -3.0550 30 1 3.0348 -0.0350 -3.5330 31 1 4.8239 -2.1130 -2.1805 32 1 4.3202 -2.1278 -3.8830 33 1 -0.8791 -3.7490 -4.8464 34 1 1.2941 -2.6684 -0.8955 35 1 2.9666 -2.3768 -0.3463 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259714723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -9.831332 kcal Electronic energy + Delta-G solvation = -14889.793331 eV Core-core repulsion = 12693.791477 eV Total energy + Delta-G solvation = -2196.001855 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65000 -35.62691 -32.68234 -31.49322 -29.02861 -28.21824 -25.03415 -24.27933 -21.98119 -20.21940 -19.83614 -18.82966 -16.45197 -15.29591 -14.81861 -14.29116 -14.13355 -13.37638 -13.15497 -12.93377 -12.60542 -12.46768 -12.07883 -11.79197 -11.47330 -11.10393 -10.84704 -10.71993 -10.51585 -10.36078 -10.19103 -9.99722 -9.63201 -9.44754 -8.87120 -8.79019 -8.46663 -7.78632 -6.03588 -4.00701 3.31871 3.40031 3.41651 4.45749 4.48437 5.07568 5.14201 5.29134 5.29691 5.67005 5.76389 5.86393 5.92628 5.99344 6.03561 6.15180 6.20922 6.30738 6.34066 6.38057 6.52816 6.54702 6.57950 6.64833 6.87365 6.98597 7.08604 7.11566 7.32024 7.45554 7.54947 7.76853 7.87979 8.57594 9.01237 9.60548 11.09451 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.013024 C = 0.011176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.082873 B = 2149.396391 C = 2504.851507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.531 5.531 3 C 0.043 3.957 4 C -0.136 4.136 5 C -0.094 4.094 6 H 0.074 0.926 7 C -0.099 4.099 8 C -0.095 4.095 9 C 0.002 3.998 10 H 0.037 0.963 11 C -0.503 4.503 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.293 1.293 18 H -0.263 1.263 19 C -0.092 4.092 20 C 0.078 3.922 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.262 0.738 34 H 0.047 0.953 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 6.343 7.670 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.255 5.255 3 C -0.085 4.085 4 C -0.174 4.174 5 C -0.113 4.113 6 H 0.092 0.908 7 C -0.137 4.137 8 C -0.133 4.133 9 C -0.017 4.017 10 H 0.055 0.945 11 C -0.540 4.540 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.543 5.543 15 Si 0.701 3.299 16 H -0.202 1.202 17 H -0.220 1.220 18 H -0.188 1.188 19 C -0.130 4.130 20 C -0.030 4.030 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.859 5.986 8.032 11.134 hybrid contribution -0.699 -0.391 -0.119 0.810 sum 4.160 5.595 7.913 10.547 Atomic orbital electron populations 1.22473 0.88413 1.02108 0.99620 1.63240 1.07594 1.13043 1.41617 1.23034 0.97295 0.89906 0.98304 1.22627 0.98841 0.97701 0.98225 1.22001 0.97715 0.93633 0.97951 0.90763 1.21317 1.00004 0.96897 0.95465 1.21409 0.97675 0.94213 0.99996 1.19348 0.93920 0.95852 0.92611 0.94505 1.21041 1.07985 1.07158 1.17864 0.90858 1.25030 0.95785 0.97581 0.94758 1.69919 1.17350 1.37017 1.29987 0.86983 0.78646 0.82979 0.81304 1.20229 1.21995 1.18797 1.21498 0.99419 0.93551 0.98547 1.22090 0.94791 0.95584 0.90495 0.91296 0.91477 0.92401 0.95511 0.91312 0.93428 0.91602 0.91591 0.93638 0.91117 0.94750 0.92659 0.92857 0.93398 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.13 60.06 0.55 0.93 16 2 N -0.53 -9.57 5.39 -232.87 -1.26 -10.83 16 3 C 0.04 0.64 6.87 -2.06 -0.01 0.63 16 4 C -0.14 -2.03 6.54 -25.16 -0.16 -2.20 16 5 C -0.09 -1.64 2.62 -89.69 -0.24 -1.87 16 6 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 7 C -0.10 -1.80 5.38 -26.99 -0.15 -1.95 16 8 C -0.10 -1.90 5.26 -26.58 -0.14 -2.04 16 9 C 0.00 0.05 2.12 -91.58 -0.19 -0.14 16 10 H 0.04 0.89 5.79 -51.93 -0.30 0.59 16 11 C -0.50 -13.61 7.17 -34.44 -0.25 -13.86 16 12 H 0.07 2.15 6.81 -52.49 -0.36 1.79 16 13 C 0.07 1.97 5.47 -17.81 -0.10 1.87 16 14 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 15 Si 0.87 21.70 25.66 -169.99 -4.36 17.34 16 16 H -0.28 -6.78 7.09 56.52 0.40 -6.38 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 18 H -0.26 -6.29 6.15 56.52 0.35 -5.94 16 19 C -0.09 -1.99 5.17 -27.12 -0.14 -2.13 16 20 C 0.08 1.56 1.69 -67.87 -0.12 1.45 16 21 H 0.07 1.60 6.32 -51.93 -0.33 1.27 16 22 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.46 8.04 -51.93 -0.42 0.04 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.66 7.62 -51.93 -0.40 0.27 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.43 6.68 -51.93 -0.35 1.08 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.05 1.11 6.11 -51.93 -0.32 0.80 16 35 H 0.04 0.77 8.12 -51.93 -0.42 0.34 16 LS Contribution 259.84 15.07 3.92 3.92 Total: -1.00 -28.88 259.84 -7.75 -36.63 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.88 Total: -1.12 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.94 Total: -19.31 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.48 Total: -37.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.36 Total: 17.34 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.88 -7.75 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.799 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds