Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47859 * 110.46979 * 2 1 4 4 C 1.55333 * 106.85658 * 232.96348 * 3 2 1 5 5 C 1.53649 * 101.84772 * 337.97802 * 4 3 2 6 6 H 1.08996 * 111.06911 * 281.65504 * 5 4 3 7 7 C 1.51775 * 115.27968 * 153.55089 * 5 4 3 8 8 C 1.53705 * 107.35338 * 184.98398 * 7 5 4 9 9 C 1.52585 * 111.43716 * 58.13400 * 8 7 5 10 10 H 1.08995 * 109.09575 * 184.70760 * 9 8 7 11 11 C 1.50698 * 109.09389 * 65.68292 * 9 8 7 12 12 H 1.08001 * 120.00534 * 334.94672 * 11 9 8 13 13 C 1.37882 * 119.99535 * 154.94542 * 11 9 8 14 14 N 1.31522 * 119.99817 * 185.88888 * 13 11 9 15 15 Si 1.86800 * 120.00200 * 5.88400 * 13 11 9 16 16 H 1.48498 * 109.47035 * 84.83729 * 15 13 11 17 17 H 1.48498 * 109.46934 * 204.83693 * 15 13 11 18 18 H 1.48502 * 109.46933 * 324.83650 * 15 13 11 19 19 C 1.53776 * 111.38027 * 305.19719 * 9 8 7 20 20 C 1.45821 * 111.00282 * 240.96004 * 2 1 3 21 21 H 1.08995 * 109.25006 * 35.93140 * 20 2 1 22 22 H 1.09004 * 109.46841 * 179.03914 * 1 2 3 23 23 H 1.08997 * 109.47385 * 299.03799 * 1 2 3 24 24 H 1.08998 * 109.46943 * 59.04345 * 1 2 3 25 25 H 1.08995 * 109.54606 * 113.91682 * 3 2 1 26 26 H 1.09006 * 110.61889 * 352.60066 * 3 2 1 27 27 H 1.08994 * 110.95341 * 219.83716 * 4 3 2 28 28 H 1.09001 * 110.95480 * 96.11317 * 4 3 2 29 29 H 1.09005 * 109.81226 * 65.54792 * 7 5 4 30 30 H 1.09001 * 109.91208 * 304.47932 * 7 5 4 31 31 H 1.08996 * 109.07531 * 297.65421 * 8 7 5 32 32 H 1.08999 * 109.08021 * 178.61738 * 8 7 5 33 33 H 0.96991 * 119.99757 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.87512 * 176.74808 * 19 9 8 35 35 H 1.09002 * 109.87932 * 297.74321 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9860 1.3852 0.0000 4 6 2.9824 1.4941 -1.1867 5 6 3.3680 0.0237 -1.4107 6 1 4.0970 -0.3073 -0.6711 7 6 3.8083 -0.3232 -2.8212 8 6 4.0260 -1.8439 -2.8725 9 6 2.7580 -2.6019 -2.4908 10 1 2.9768 -3.6692 -2.4582 11 6 1.6996 -2.3487 -3.5331 12 1 1.7329 -1.4486 -4.1291 13 6 0.6885 -3.2661 -3.7259 14 7 -0.1677 -3.1038 -4.7110 15 14 0.5349 -4.7397 -2.5882 16 1 -0.2353 -4.3532 -1.3789 17 1 -0.1712 -5.8388 -3.2944 18 1 1.8891 -5.1986 -2.1870 19 6 2.2293 -2.1546 -1.1178 20 6 1.9916 -0.6608 -1.1902 21 1 1.3425 -0.4407 -2.0377 22 1 -0.3633 -1.0276 -0.0172 23 1 -0.3634 0.4988 0.8984 24 1 -0.3633 0.5286 -0.8813 25 1 2.5037 1.5812 0.9389 26 1 1.1724 2.0987 -0.1314 27 1 3.8538 2.0879 -0.9108 28 1 2.4941 1.9078 -2.0690 29 1 4.7396 0.1929 -3.0550 30 1 3.0348 -0.0350 -3.5330 31 1 4.8239 -2.1130 -2.1805 32 1 4.3202 -2.1278 -3.8830 33 1 -0.8791 -3.7490 -4.8464 34 1 1.2941 -2.6684 -0.8955 35 1 2.9666 -2.3768 -0.3463 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259714723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -29.071625 kcal Electronic energy + Delta-G solvation = -14890.627653 eV Core-core repulsion = 12693.791477 eV Total energy + Delta-G solvation = -2196.836176 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.12530 -37.23892 -34.52931 -33.21906 -30.57677 -29.79707 -26.69999 -25.98551 -23.46559 -21.74741 -21.24174 -20.66349 -18.43187 -16.85438 -16.25027 -16.07982 -15.74688 -14.91128 -14.81257 -14.62433 -14.21647 -14.07781 -13.62698 -13.29877 -13.13626 -12.82740 -12.53025 -12.12444 -12.04468 -11.92806 -11.78279 -11.70055 -11.41747 -11.10930 -10.73820 -10.64677 -10.45127 -9.23495 -8.24971 -6.24391 1.32694 1.33737 1.42920 2.35707 3.05234 3.14822 3.70462 3.83592 4.03111 4.27831 4.42370 4.49071 4.50915 4.53517 4.67107 4.71889 4.78449 4.84515 4.88751 4.93954 4.97520 5.06106 5.07141 5.17604 5.31154 5.36454 5.42699 5.54909 5.63808 5.76480 5.82635 6.15438 6.26959 6.39417 6.81915 7.39254 8.91598 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.013024 C = 0.011176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.082873 B = 2149.396391 C = 2504.851507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.040 3.960 4 C -0.129 4.129 5 C -0.088 4.088 6 H 0.090 0.910 7 C -0.094 4.094 8 C -0.096 4.096 9 C -0.001 4.001 10 H 0.031 0.969 11 C -0.490 4.490 12 H 0.036 0.964 13 C 0.010 3.990 14 N -0.954 5.954 15 Si 0.929 3.071 16 H -0.272 1.272 17 H -0.294 1.294 18 H -0.242 1.242 19 C -0.088 4.088 20 C 0.079 3.921 21 H 0.023 0.977 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.014 0.986 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.261 0.739 34 H 0.025 0.975 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 7.010 10.074 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.087 4.087 4 C -0.167 4.167 5 C -0.107 4.107 6 H 0.109 0.891 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.020 4.020 10 H 0.049 0.951 11 C -0.528 4.528 12 H 0.054 0.946 13 C -0.186 4.186 14 N -0.596 5.596 15 Si 0.755 3.245 16 H -0.198 1.198 17 H -0.221 1.221 18 H -0.166 1.166 19 C -0.127 4.127 20 C -0.029 4.029 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.810 6.665 10.452 14.144 hybrid contribution -1.291 -0.517 -0.900 1.656 sum 5.519 6.149 9.552 12.630 Atomic orbital electron populations 1.22483 0.88299 1.01117 1.00601 1.63257 1.07857 1.14985 1.39970 1.23177 0.97821 0.88256 0.99433 1.22620 0.99955 0.96282 0.97888 1.22001 0.96111 0.95105 0.97441 0.89134 1.21245 1.00491 0.95956 0.95523 1.21382 0.96682 0.95073 1.00211 1.19378 0.94185 0.96155 0.92306 0.95118 1.21281 1.08654 1.05222 1.17688 0.94568 1.25816 0.95746 1.00814 0.96243 1.70065 1.18611 1.38552 1.32347 0.86047 0.79574 0.79544 0.79318 1.19791 1.22109 1.16614 1.21378 0.98826 0.94630 0.97834 1.21896 0.96013 0.95125 0.89891 0.95846 0.93477 0.89240 0.96701 0.88909 0.92395 0.88281 0.92641 0.90410 0.94416 0.91629 0.93631 0.93008 0.95604 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 9.13 127.69 1.17 1.95 16 2 N -0.54 -18.28 5.39 -890.67 -4.80 -23.08 16 3 C 0.04 1.08 6.87 86.92 0.60 1.67 16 4 C -0.13 -3.45 6.54 31.61 0.21 -3.25 16 5 C -0.09 -2.81 2.62 -10.19 -0.03 -2.84 16 6 H 0.09 2.69 8.13 -2.39 -0.02 2.67 16 7 C -0.09 -3.28 5.38 30.43 0.16 -3.12 16 8 C -0.10 -3.66 5.26 30.69 0.16 -3.50 16 9 C 0.00 -0.04 2.12 -11.42 -0.02 -0.06 16 10 H 0.03 1.44 5.79 -2.39 -0.01 1.42 16 11 C -0.49 -27.47 7.17 25.60 0.18 -27.28 16 12 H 0.04 2.25 6.81 -2.91 -0.02 2.23 16 13 C 0.01 0.57 5.47 84.65 0.46 1.03 16 14 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 15 Si 0.93 45.38 25.66 68.60 1.76 47.14 16 16 H -0.27 -13.01 7.09 99.48 0.71 -12.30 16 17 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 18 H -0.24 -10.93 6.15 99.48 0.61 -10.32 16 19 C -0.09 -3.73 5.17 30.34 0.16 -3.57 16 20 C 0.08 3.11 1.69 45.39 0.08 3.19 16 21 H 0.02 1.13 6.32 -2.39 -0.02 1.12 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.01 0.51 8.04 -2.39 -0.02 0.49 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.06 1.44 7.62 -2.38 -0.02 1.42 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.04 1.55 6.68 -2.39 -0.02 1.53 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.03 1.18 6.11 -2.39 -0.01 1.16 16 35 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 Total: -1.00 -64.40 259.84 1.32 -63.08 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.94 Total: 8.71 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.12 Total: -35.78 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -4.51 Total: -83.15 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.76 Total: 47.14 kcal Total: -64.40 1.32 -63.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.010 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds