Wall clock time and date at job start Mon Mar 30 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47612 * 111.00493 * 2 1 4 4 C 1.53933 * 106.85361 * 235.37347 * 3 2 1 5 5 C 1.54229 * 102.55955 * 337.16673 * 4 3 2 6 6 H 1.09005 * 109.52168 * 282.78494 * 5 4 3 7 7 C 1.50856 * 112.64306 * 160.60647 * 5 4 3 8 8 C 1.52835 * 111.62961 * 296.05182 * 7 5 4 9 9 C 1.53314 * 108.15658 * 301.03616 * 8 7 5 10 10 H 1.08994 * 109.64376 * 304.00124 * 9 8 7 11 11 C 1.50695 * 109.63724 * 183.58466 * 9 8 7 12 12 H 1.07995 * 120.00424 * 245.36906 * 11 9 8 13 13 C 1.37883 * 119.99648 * 65.36555 * 11 9 8 14 14 N 1.31516 * 119.99840 * 5.42699 * 13 11 9 15 15 Si 1.86798 * 119.99736 * 185.15034 * 13 11 9 16 16 H 1.48503 * 109.47305 * 85.00300 * 15 13 11 17 17 H 1.48500 * 109.46951 * 204.99821 * 15 13 11 18 18 H 1.48495 * 109.47384 * 324.99911 * 15 13 11 19 19 C 1.52604 * 108.46025 * 63.89840 * 9 8 7 20 20 C 1.48965 * 111.00186 * 239.69853 * 2 1 3 21 21 H 1.08996 * 111.77449 * 269.38384 * 20 2 1 22 22 H 1.08998 * 109.47675 * 180.29464 * 1 2 3 23 23 H 1.08996 * 109.47006 * 300.30488 * 1 2 3 24 24 H 1.09000 * 109.46568 * 60.29640 * 1 2 3 25 25 H 1.09002 * 109.89256 * 354.03182 * 3 2 1 26 26 H 1.09006 * 109.89018 * 115.22586 * 3 2 1 27 27 H 1.09007 * 110.14313 * 219.11876 * 4 3 2 28 28 H 1.08996 * 111.23588 * 95.71846 * 4 3 2 29 29 H 1.08997 * 109.04928 * 175.49841 * 7 5 4 30 30 H 1.09001 * 109.05052 * 56.60591 * 7 5 4 31 31 H 1.08996 * 109.72166 * 181.37735 * 8 7 5 32 32 H 1.08995 * 109.72330 * 60.70879 * 8 7 5 33 33 H 0.97001 * 119.99465 * 179.72392 * 14 13 11 34 34 H 1.08997 * 109.18349 * 58.06487 * 19 9 8 35 35 H 1.09001 * 109.18071 * 177.30311 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3780 0.0000 4 6 2.9395 1.4946 -1.2123 5 6 3.3308 0.0262 -1.4754 6 1 4.0766 -0.2885 -0.7454 7 6 3.8656 -0.1915 -2.8692 8 6 2.8036 0.0928 -3.9308 9 6 1.6128 -0.8390 -3.6770 10 1 1.9524 -1.8747 -3.6732 11 6 0.5810 -0.6482 -4.7586 12 1 -0.3898 -0.2435 -4.5135 13 6 0.8764 -0.9904 -6.0612 14 7 2.0170 -1.5813 -6.3434 15 14 -0.3468 -0.6216 -7.4240 16 1 -0.1553 0.7730 -7.8971 17 1 -0.1284 -1.5614 -8.5528 18 1 -1.7289 -0.7831 -6.9058 19 6 1.0056 -0.4889 -2.3215 20 6 2.0029 -0.7017 -1.2007 21 1 2.1579 -1.7640 -1.0126 22 1 -0.3634 -1.0276 0.0053 23 1 -0.3633 0.5185 0.8872 24 1 -0.3632 0.5092 -0.8927 25 1 1.1793 2.0897 -0.1066 26 1 2.5388 1.5677 0.9273 27 1 3.8154 2.0889 -0.9516 28 1 2.4236 1.9191 -2.0734 29 1 4.1971 -1.2254 -2.9655 30 1 4.7166 0.4701 -3.0311 31 1 3.2146 -0.0972 -4.9223 32 1 2.4802 1.1312 -3.8588 33 1 2.2230 -1.8256 -7.2592 34 1 0.7044 0.5587 -2.3238 35 1 0.1282 -1.1125 -2.1503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259714726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:37 Heat of formation + Delta-G solvation = -25.382492 kcal Electronic energy + Delta-G solvation = -14776.437024 eV Core-core repulsion = 12579.760820 eV Total energy + Delta-G solvation = -2196.676204 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37711 -36.78120 -34.63944 -33.17538 -30.08609 -29.91248 -26.60579 -26.36982 -23.32417 -22.38572 -21.20594 -19.44845 -18.37430 -17.00895 -16.72129 -16.27362 -15.37000 -14.89822 -14.74651 -14.45757 -14.04328 -13.84202 -13.53644 -13.20479 -12.88452 -12.67889 -12.62138 -12.26325 -12.17017 -12.02947 -11.93345 -11.52894 -11.37503 -11.08161 -10.81108 -10.47208 -10.37743 -9.14830 -8.11066 -6.22095 1.38479 1.39100 1.48383 2.41783 3.10387 3.17696 3.69982 3.80652 4.10362 4.35278 4.44404 4.45187 4.54346 4.60293 4.63830 4.72215 4.81171 4.83753 4.94394 5.00511 5.06827 5.10132 5.18981 5.22050 5.37261 5.44313 5.51987 5.60576 5.66202 5.98956 6.01267 6.13648 6.21528 6.39809 6.90383 7.45001 8.95587 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043118 B = 0.009942 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.220142 B = 2815.552466 C = 3155.278467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.539 5.539 3 C 0.042 3.958 4 C -0.133 4.133 5 C -0.079 4.079 6 H 0.084 0.916 7 C -0.100 4.100 8 C -0.094 4.094 9 C 0.049 3.951 10 H -0.004 1.004 11 C -0.535 4.535 12 H 0.045 0.955 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 0.948 3.052 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.271 1.271 19 C -0.108 4.108 20 C 0.077 3.923 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.025 0.975 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.260 0.740 34 H 0.044 0.956 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 5.342 10.430 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.263 5.263 3 C -0.085 4.085 4 C -0.171 4.171 5 C -0.098 4.098 6 H 0.103 0.897 7 C -0.138 4.138 8 C -0.133 4.133 9 C 0.030 3.970 10 H 0.014 0.986 11 C -0.573 4.573 12 H 0.064 0.936 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.774 3.226 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.147 4.147 20 C -0.031 4.031 21 H 0.095 0.905 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.443 5.016 10.782 11.979 hybrid contribution -1.001 0.260 -1.931 2.190 sum 0.442 5.276 8.852 10.314 Atomic orbital electron populations 1.22583 0.87962 1.01991 1.00725 1.64169 1.08300 1.14776 1.39019 1.22822 0.97937 0.89034 0.98722 1.22596 1.00266 0.96508 0.97770 1.21348 0.96136 0.95641 0.96716 0.89740 1.20920 0.98150 1.00645 0.94078 1.21374 0.96468 0.97749 0.97664 1.18545 0.93313 0.93921 0.91263 0.98609 1.21543 0.99838 1.42161 0.93752 0.93624 1.25700 0.97053 0.94755 1.00893 1.70067 1.24611 1.41162 1.19696 0.85730 0.79695 0.78127 0.79082 1.20006 1.20880 1.19535 1.21666 0.97816 0.99372 0.95835 1.22342 0.94356 0.98212 0.88165 0.90507 0.91955 0.90112 0.95641 0.92888 0.88919 0.89138 0.92604 0.93636 0.91631 0.94008 0.94757 0.93079 0.93784 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.09 127.69 1.03 1.49 16 2 N -0.54 -16.51 5.45 -888.91 -4.84 -21.35 16 3 C 0.04 1.12 6.65 86.48 0.57 1.69 16 4 C -0.13 -3.80 5.77 31.33 0.18 -3.62 16 5 C -0.08 -2.57 2.95 -10.77 -0.03 -2.60 16 6 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 7 C -0.10 -3.74 5.39 29.84 0.16 -3.58 16 8 C -0.09 -4.41 4.94 30.64 0.15 -4.26 16 9 C 0.05 2.47 1.96 -11.57 -0.02 2.45 16 10 H 0.00 -0.24 8.13 -2.39 -0.02 -0.26 16 11 C -0.53 -30.08 8.50 25.60 0.22 -29.87 16 12 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 13 C 0.01 0.83 5.25 84.66 0.44 1.28 16 14 N -0.92 -53.86 11.98 21.45 0.26 -53.61 16 15 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.11 -4.55 2.72 29.98 0.08 -4.47 16 20 C 0.08 2.74 3.61 44.34 0.16 2.89 16 21 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 22 H 0.06 1.79 7.95 -2.39 -0.02 1.77 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.03 0.80 5.90 -2.39 -0.01 0.78 16 25 H 0.05 1.34 7.59 -2.39 -0.02 1.32 16 26 H 0.09 2.07 8.14 -2.38 -0.02 2.06 16 27 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.06 1.82 6.02 -2.39 -0.01 1.81 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 2.22 6.71 -2.39 -0.02 2.21 16 32 H 0.03 1.56 6.71 -2.39 -0.02 1.55 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.04 1.86 5.82 -2.39 -0.01 1.84 16 35 H 0.04 1.71 7.24 -2.39 -0.02 1.69 16 Total: -1.00 -60.13 259.23 1.43 -58.70 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.04 Total: 8.56 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.95 Total: -38.60 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -4.58 Total: -74.95 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.13 1.43 -58.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.314 kcal (2) G-P(sol) polarization free energy of solvation -60.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds