Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 109.46858 * 2 1 4 4 C 1.50703 * 109.46998 * 240.00082 * 2 1 3 5 5 H 1.07995 * 119.99734 * 239.99715 * 4 2 1 6 6 C 1.37874 * 119.99868 * 60.00324 * 4 2 1 7 7 N 1.31512 * 120.00317 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99681 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47467 * 59.99627 * 8 6 4 10 10 H 1.48499 * 109.47359 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46738 * 299.99553 * 8 6 4 12 12 C 1.53001 * 109.46835 * 119.99858 * 2 1 3 13 13 H 1.08991 * 115.58529 * 39.79165 * 12 2 1 14 14 C 1.53150 * 117.51438 * 185.57569 * 12 2 1 15 15 C 1.52296 * 59.87142 * 107.46291 * 14 12 2 16 16 C 1.53624 * 121.44602 * 249.09820 * 15 14 12 17 17 C 1.54569 * 104.75446 * 215.96231 * 16 15 14 18 18 N 1.48615 * 104.64253 * 23.75779 * 17 16 15 19 19 C 1.46901 * 110.99958 * 201.27841 * 18 17 16 20 20 C 1.48735 * 104.35734 * 320.91131 * 18 17 16 21 21 H 1.08997 * 109.46836 * 53.74830 * 1 2 3 22 22 H 1.08997 * 109.47079 * 173.74604 * 1 2 3 23 23 H 1.09005 * 109.46909 * 293.74665 * 1 2 3 24 24 H 0.96999 * 120.00170 * 180.02562 * 7 6 4 25 25 H 1.08999 * 117.51838 * 0.02562 * 14 12 2 26 26 H 1.08998 * 117.52269 * 214.91928 * 14 12 2 27 27 H 1.08999 * 110.38155 * 334.78100 * 16 15 14 28 28 H 1.08992 * 110.38370 * 97.03285 * 16 15 14 29 29 H 1.09002 * 110.40096 * 142.54017 * 17 16 15 30 30 H 1.08992 * 110.40143 * 264.95987 * 17 16 15 31 31 H 1.09003 * 109.46965 * 60.12355 * 19 18 17 32 32 H 1.09000 * 109.47082 * 180.11791 * 19 18 17 33 33 H 1.09001 * 109.46826 * 300.12677 * 19 18 17 34 34 H 1.08999 * 110.45201 * 280.10781 * 20 18 17 35 35 H 1.08996 * 110.44805 * 157.55987 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 1 1.4847 -1.6138 1.5371 14 6 3.5504 -0.7152 1.5028 15 6 2.6269 0.1336 2.3666 16 6 2.6369 1.6675 2.2831 17 6 2.3886 2.1423 3.7330 18 7 2.8347 1.0068 4.5817 19 6 2.2214 1.0734 5.9149 20 6 2.3812 -0.2038 3.8463 21 1 -0.3633 0.6077 -0.8287 22 1 -0.3633 -1.0215 -0.1119 23 1 -0.3633 0.4139 0.9407 24 1 0.7083 1.1610 -3.4844 25 1 4.1803 -0.1971 0.7797 26 1 3.9885 -1.6041 1.9567 27 1 3.6045 2.0220 1.9280 28 1 1.8409 2.0172 1.6258 29 1 2.9799 3.0324 3.9478 30 1 1.3288 2.3417 3.8912 31 1 1.1365 1.0301 5.8183 32 1 2.5665 0.2321 6.5160 33 1 2.5060 2.0073 6.3995 34 1 1.3210 -0.3831 4.0250 35 1 2.9703 -1.0719 4.1418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259796747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = 19.325958 kcal Electronic energy + Delta-G solvation = -14170.988208 eV Core-core repulsion = 11976.250708 eV Total energy + Delta-G solvation = -2194.737500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18727 -35.98202 -33.15354 -30.36976 -29.75008 -27.13025 -25.05531 -24.22613 -22.08875 -21.08376 -19.58573 -17.88028 -16.16040 -15.43769 -15.21304 -14.54886 -14.16577 -13.65594 -13.11600 -12.86527 -12.55025 -12.46856 -11.42729 -11.34404 -11.23374 -11.17874 -11.03430 -10.81845 -10.76240 -10.44466 -10.37016 -9.99937 -9.46474 -9.21729 -8.75829 -8.52037 -8.28401 -8.23700 -5.93123 -3.97717 3.35206 3.39654 3.42459 4.17144 4.46946 4.68593 4.95483 5.10043 5.37344 5.42719 5.46722 5.53183 5.60253 5.76414 5.85029 5.89835 6.04346 6.09698 6.36552 6.42168 6.49594 6.54762 6.69589 6.82955 6.95628 6.99794 7.05229 7.19500 7.31117 7.41480 7.79105 8.05794 8.17017 8.52690 9.05619 9.66131 11.13291 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058729 B = 0.007522 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.651301 B = 3721.507194 C = 3853.266353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 H 0.033 0.967 4 C -0.504 4.504 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.101 4.101 13 H 0.084 0.916 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.086 4.086 17 C 0.034 3.966 18 N -0.517 5.517 19 C 0.014 3.986 20 C 0.072 3.928 21 H 0.077 0.923 22 H 0.026 0.974 23 H 0.004 0.996 24 H 0.259 0.741 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 0.651 11.488 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.051 0.949 4 C -0.543 4.543 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.119 4.119 13 H 0.102 0.898 14 C -0.192 4.192 15 C -0.148 4.148 16 C -0.124 4.124 17 C -0.093 4.093 18 N -0.240 5.240 19 C -0.135 4.135 20 C -0.056 4.056 21 H 0.096 0.904 22 H 0.045 0.955 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.060 0.781 11.457 11.667 hybrid contribution -0.584 -0.534 -0.893 1.193 sum 1.476 0.247 10.564 10.670 Atomic orbital electron populations 1.21748 0.98761 0.99736 0.98664 1.18338 0.92167 0.95394 0.89108 0.94945 1.21119 1.30668 1.12173 0.90295 0.92685 1.24956 0.95250 0.95053 0.98870 1.69890 1.37075 1.23101 1.23247 0.86700 0.79179 0.79784 0.82562 1.20402 1.21434 1.20362 1.22643 0.94357 0.98791 0.96129 0.89788 1.22827 0.94688 1.00303 1.01426 1.21693 1.08299 0.93604 0.91187 1.21750 1.02452 0.93342 0.94818 1.23148 0.98183 0.94379 0.93640 1.65374 1.53856 1.02940 1.01873 1.22494 0.96844 1.02265 0.91927 1.22517 0.97877 0.93101 0.92099 0.90392 0.95527 0.97672 0.93120 0.88785 0.90407 0.91372 0.90201 0.90623 0.94102 0.95586 0.91612 0.91635 0.93921 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.88 37.16 0.33 -2.87 16 2 C 0.07 1.68 2.12 -91.77 -0.19 1.49 16 3 H 0.03 0.86 6.15 -51.93 -0.32 0.54 16 4 C -0.50 -13.78 8.35 -34.44 -0.29 -14.07 16 5 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.65 11.39 55.43 0.63 -25.02 16 8 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C -0.10 -2.10 4.90 -90.83 -0.44 -2.55 16 13 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 14 C -0.16 -2.98 9.75 -27.01 -0.26 -3.24 16 15 C -0.15 -2.68 2.51 -154.45 -0.39 -3.07 16 16 C -0.09 -1.51 6.06 -25.58 -0.16 -1.66 16 17 C 0.03 0.51 6.51 -2.05 -0.01 0.50 16 18 N -0.52 -7.71 5.66 -238.32 -1.35 -9.06 16 19 C 0.01 0.16 9.53 60.07 0.57 0.74 16 20 C 0.07 1.13 6.29 -2.42 -0.02 1.12 16 21 H 0.08 2.08 6.26 -51.93 -0.33 1.75 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.52 6.66 -51.93 -0.35 1.17 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.59 7.97 -51.93 -0.41 0.17 16 31 H 0.03 0.30 7.98 -51.93 -0.41 -0.11 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -28.17 278.45 -8.49 -36.66 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.00 Total: -1.14 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.95 Total: -22.06 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.72 Total: -34.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.17 -8.49 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.985 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds