Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 109.46858 * 2 1 4 4 C 1.50703 * 109.46998 * 240.00082 * 2 1 3 5 5 H 1.07995 * 119.99734 * 239.99715 * 4 2 1 6 6 C 1.37874 * 119.99868 * 60.00324 * 4 2 1 7 7 N 1.31512 * 120.00317 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99681 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47467 * 59.99627 * 8 6 4 10 10 H 1.48499 * 109.47359 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46738 * 299.99553 * 8 6 4 12 12 C 1.53001 * 109.46835 * 119.99858 * 2 1 3 13 13 H 1.08991 * 115.58529 * 39.79165 * 12 2 1 14 14 C 1.53150 * 117.51438 * 185.57569 * 12 2 1 15 15 C 1.52296 * 59.87142 * 107.46291 * 14 12 2 16 16 C 1.53624 * 121.44602 * 249.09820 * 15 14 12 17 17 C 1.54569 * 104.75446 * 215.96231 * 16 15 14 18 18 N 1.48615 * 104.64253 * 23.75779 * 17 16 15 19 19 C 1.46901 * 110.99958 * 201.27841 * 18 17 16 20 20 C 1.48735 * 104.35734 * 320.91131 * 18 17 16 21 21 H 1.08997 * 109.46836 * 53.74830 * 1 2 3 22 22 H 1.08997 * 109.47079 * 173.74604 * 1 2 3 23 23 H 1.09005 * 109.46909 * 293.74665 * 1 2 3 24 24 H 0.96999 * 120.00170 * 180.02562 * 7 6 4 25 25 H 1.08999 * 117.51838 * 0.02562 * 14 12 2 26 26 H 1.08998 * 117.52269 * 214.91928 * 14 12 2 27 27 H 1.08999 * 110.38155 * 334.78100 * 16 15 14 28 28 H 1.08992 * 110.38370 * 97.03285 * 16 15 14 29 29 H 1.09002 * 110.40096 * 142.54017 * 17 16 15 30 30 H 1.08992 * 110.40143 * 264.95987 * 17 16 15 31 31 H 1.09003 * 109.46965 * 60.12355 * 19 18 17 32 32 H 1.09000 * 109.47082 * 180.11791 * 19 18 17 33 33 H 1.09001 * 109.46826 * 300.12677 * 19 18 17 34 34 H 1.08999 * 110.45201 * 280.10781 * 20 18 17 35 35 H 1.08996 * 110.44805 * 157.55987 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 1 1.4847 -1.6138 1.5371 14 6 3.5504 -0.7152 1.5028 15 6 2.6269 0.1336 2.3666 16 6 2.6369 1.6675 2.2831 17 6 2.3886 2.1423 3.7330 18 7 2.8347 1.0068 4.5817 19 6 2.2214 1.0734 5.9149 20 6 2.3812 -0.2038 3.8463 21 1 -0.3633 0.6077 -0.8287 22 1 -0.3633 -1.0215 -0.1119 23 1 -0.3633 0.4139 0.9407 24 1 0.7083 1.1610 -3.4844 25 1 4.1803 -0.1971 0.7797 26 1 3.9885 -1.6041 1.9567 27 1 3.6045 2.0220 1.9280 28 1 1.8409 2.0172 1.6258 29 1 2.9799 3.0324 3.9478 30 1 1.3288 2.3417 3.8912 31 1 1.1365 1.0301 5.8183 32 1 2.5665 0.2321 6.5160 33 1 2.5060 2.0073 6.3995 34 1 1.3210 -0.3831 4.0250 35 1 2.9703 -1.0719 4.1418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259796747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = 2.803017 kcal Electronic energy + Delta-G solvation = -14171.704696 eV Core-core repulsion = 11976.250708 eV Total energy + Delta-G solvation = -2195.453988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57592 -37.46093 -35.07060 -32.08149 -31.25859 -28.38916 -27.12345 -25.43722 -23.90449 -22.34381 -21.21833 -19.42318 -18.20123 -16.74195 -16.62496 -16.42335 -15.34979 -15.10787 -14.71980 -14.56020 -14.01968 -13.67469 -13.23841 -13.08437 -12.77251 -12.72307 -12.50096 -12.36094 -12.29711 -12.21128 -11.99980 -11.86518 -11.24030 -11.05591 -10.43311 -10.38887 -10.20084 -9.43566 -8.04751 -6.16365 1.42760 1.43618 1.51106 2.44964 2.92366 3.22876 3.27662 3.61086 3.87113 4.10682 4.20943 4.28140 4.48643 4.56765 4.66393 4.74477 4.80154 4.80854 4.96978 4.98208 5.01715 5.02820 5.06552 5.15885 5.19374 5.39338 5.42267 5.50826 5.66085 5.84067 6.05101 6.10256 6.14423 6.44458 6.94620 7.50751 9.00112 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058729 B = 0.007522 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.651301 B = 3721.507194 C = 3853.266353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.069 3.931 3 H 0.007 0.993 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.120 4.120 13 H 0.090 0.910 14 C -0.153 4.153 15 C -0.133 4.133 16 C -0.091 4.091 17 C 0.041 3.959 18 N -0.526 5.526 19 C 0.013 3.987 20 C 0.077 3.923 21 H 0.050 0.950 22 H 0.024 0.976 23 H 0.025 0.975 24 H 0.259 0.741 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 0.071 12.971 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 H 0.025 0.975 4 C -0.558 4.558 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.139 4.139 13 H 0.108 0.892 14 C -0.190 4.190 15 C -0.134 4.134 16 C -0.129 4.129 17 C -0.086 4.086 18 N -0.250 5.250 19 C -0.136 4.136 20 C -0.051 4.051 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.580 0.196 12.955 13.211 hybrid contribution -0.745 -0.320 -1.334 1.561 sum 1.835 -0.123 11.621 11.766 Atomic orbital electron populations 1.21590 0.98684 0.99052 0.98566 1.18214 0.92231 0.94174 0.90352 0.97520 1.21476 1.30514 1.12149 0.91649 0.93037 1.25713 0.95536 0.95787 1.01777 1.70025 1.38077 1.24321 1.23737 0.85733 0.78749 0.78818 0.79075 1.19743 1.21159 1.19824 1.22386 0.95669 0.99708 0.96098 0.89225 1.22821 0.93358 1.01362 1.01461 1.21770 1.05799 0.93637 0.92198 1.21749 1.01347 0.93203 0.96581 1.23103 0.98914 0.95030 0.91588 1.65391 1.54452 1.02182 1.02945 1.22584 0.96947 1.03743 0.90294 1.22488 0.98432 0.94072 0.90108 0.93117 0.95731 0.95627 0.93226 0.90704 0.88086 0.91902 0.92447 0.88953 0.93543 0.95253 0.90311 0.90125 0.93497 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.88 71.98 0.64 -5.34 16 2 C 0.07 3.45 2.12 -11.54 -0.02 3.43 16 3 H 0.01 0.37 6.15 -2.38 -0.01 0.36 16 4 C -0.52 -28.78 8.35 25.60 0.21 -28.57 16 5 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.97 11.39 21.45 0.24 -53.72 16 8 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.12 -4.98 4.90 -10.93 -0.05 -5.03 16 13 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 14 C -0.15 -5.75 9.75 30.41 0.30 -5.45 16 15 C -0.13 -4.71 2.51 -52.14 -0.13 -4.84 16 16 C -0.09 -3.15 6.06 31.34 0.19 -2.96 16 17 C 0.04 1.14 6.51 86.51 0.56 1.71 16 18 N -0.53 -14.13 5.66 -907.91 -5.14 -19.27 16 19 C 0.01 0.26 9.53 127.69 1.22 1.47 16 20 C 0.08 2.22 6.29 86.20 0.54 2.77 16 21 H 0.05 2.76 6.26 -2.39 -0.01 2.75 16 22 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 2.23 6.66 -2.39 -0.02 2.22 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 1.23 7.97 -2.39 -0.02 1.21 16 31 H 0.03 0.58 7.98 -2.39 -0.02 0.56 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.33 7.90 -2.39 -0.02 1.32 16 35 H 0.09 2.32 8.11 -2.39 -0.02 2.30 16 Total: -1.00 -59.80 278.45 2.07 -57.73 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.03 Total: 10.84 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.90 Total: -41.83 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -4.89 Total: -72.99 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -59.80 2.07 -57.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.537 kcal (2) G-P(sol) polarization free energy of solvation -59.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds