Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47435 * 2 1 4 4 C 1.50702 * 109.47380 * 239.99561 * 2 1 3 5 5 H 1.07999 * 120.00114 * 240.00022 * 4 2 1 6 6 C 1.37874 * 119.99827 * 60.00416 * 4 2 1 7 7 N 1.31517 * 119.99853 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99991 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47154 * 270.00170 * 8 6 4 10 10 H 1.48499 * 109.46919 * 30.00377 * 8 6 4 11 11 H 1.48501 * 109.46705 * 150.00497 * 8 6 4 12 12 C 1.53005 * 109.47072 * 119.99679 * 2 1 3 13 13 H 1.08996 * 115.56323 * 40.14184 * 12 2 1 14 14 C 1.53148 * 117.51734 * 185.89728 * 12 2 1 15 15 C 1.52290 * 59.81707 * 107.43463 * 14 12 2 16 16 C 1.53621 * 121.48269 * 110.81796 * 15 14 12 17 17 C 1.54563 * 104.75408 * 143.73751 * 16 15 14 18 18 N 1.48617 * 104.64638 * 23.74622 * 17 16 15 19 19 C 1.46901 * 110.99761 * 201.28342 * 18 17 16 20 20 C 1.48727 * 104.35591 * 320.91829 * 18 17 16 21 21 H 1.08994 * 109.47567 * 293.70912 * 1 2 3 22 22 H 1.09007 * 109.46888 * 53.70785 * 1 2 3 23 23 H 1.08998 * 109.47225 * 173.70526 * 1 2 3 24 24 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 25 25 H 1.09003 * 117.51547 * 214.86757 * 14 12 2 26 26 H 1.08998 * 117.51841 * 359.95402 * 14 12 2 27 27 H 1.08999 * 110.38310 * 262.55056 * 16 15 14 28 28 H 1.08998 * 110.38917 * 24.80228 * 16 15 14 29 29 H 1.08997 * 110.40311 * 142.54255 * 17 16 15 30 30 H 1.09003 * 110.39773 * 264.95631 * 17 16 15 31 31 H 1.08995 * 109.46945 * 60.13071 * 19 18 17 32 32 H 1.09007 * 109.46385 * 180.12628 * 19 18 17 33 33 H 1.08999 * 109.46976 * 300.12391 * 19 18 17 34 34 H 1.08997 * 110.45241 * 280.10011 * 20 18 17 35 35 H 1.09004 * 110.44811 * 157.55557 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 2.1374 -0.8598 -3.5564 8 14 0.6249 1.2789 -2.6542 9 1 -0.8027 0.8726 -2.6999 10 1 0.8472 2.1764 -1.4921 11 1 0.9761 1.9948 -3.9069 12 6 2.0399 -0.7212 1.2493 13 1 1.4880 -1.6171 1.5334 14 6 3.5496 -0.7087 1.5068 15 6 2.6189 0.1342 2.3685 16 6 2.3687 -0.2032 3.8462 17 6 2.2419 1.1686 4.5471 18 7 1.8335 2.1055 3.4682 19 6 2.1508 3.4938 3.8286 20 6 2.6200 1.6693 2.2837 21 1 -0.3634 0.4132 0.9408 22 1 -0.3633 0.6083 -0.8284 23 1 -0.3633 -1.0214 -0.1127 24 1 1.9028 -0.5286 -4.4375 25 1 3.9903 -1.5962 1.9611 26 1 4.1792 -0.1874 0.7858 27 1 1.4451 -0.7716 3.9547 28 1 3.2090 -0.7641 4.2552 29 1 1.4792 1.1288 5.3248 30 1 3.2008 1.4697 4.9691 31 1 3.2249 3.5918 3.9860 32 1 1.8395 4.1585 3.0227 33 1 1.6234 3.7611 4.7443 34 1 3.6385 2.0531 2.3404 35 1 2.1380 2.0001 1.3637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259796751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = 29.421437 kcal Electronic energy + Delta-G solvation = -14331.078958 eV Core-core repulsion = 12136.779231 eV Total energy + Delta-G solvation = -2194.299727 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.33031 -36.06607 -33.20365 -31.09563 -29.84474 -27.31161 -24.98640 -24.28425 -22.40729 -21.19447 -19.50660 -18.02864 -16.66966 -15.51310 -15.23902 -14.61735 -14.16365 -13.69145 -13.52465 -12.96616 -12.58728 -12.37844 -11.99106 -11.98016 -11.40775 -11.28855 -11.23392 -11.01260 -10.83797 -10.49239 -10.19506 -9.74112 -9.53540 -9.31284 -8.93259 -8.53000 -8.46988 -8.30168 -6.00234 -3.97652 3.33572 3.43106 3.45667 4.11377 4.47821 4.57183 4.86119 4.97440 5.28769 5.31863 5.35441 5.47200 5.51922 5.66695 5.80571 5.87303 5.96127 6.04831 6.13269 6.23701 6.31753 6.35594 6.40721 6.49259 6.64461 6.80409 6.92004 7.01049 7.09473 7.18477 7.19070 7.65020 7.85693 8.62004 9.05794 9.63197 11.13240 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039062 B = 0.009789 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.645174 B = 2859.780042 C = 3222.963873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.034 3.966 3 H 0.031 0.969 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.067 3.933 7 N -0.905 5.905 8 Si 0.888 3.112 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.300 1.300 12 C -0.086 4.086 13 H 0.091 0.909 14 C -0.157 4.157 15 C -0.150 4.150 16 C -0.086 4.086 17 C 0.035 3.965 18 N -0.514 5.514 19 C 0.014 3.986 20 C 0.066 3.934 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.050 0.950 24 H 0.262 0.738 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 5.102 14.251 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.049 0.951 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.134 4.134 7 N -0.544 5.544 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.193 1.193 11 H -0.228 1.228 12 C -0.104 4.104 13 H 0.109 0.891 14 C -0.195 4.195 15 C -0.150 4.150 16 C -0.124 4.124 17 C -0.093 4.093 18 N -0.237 5.237 19 C -0.135 4.135 20 C -0.061 4.061 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.140 5.108 13.969 14.875 hybrid contribution 0.303 0.859 -0.094 0.916 sum 0.162 5.968 13.875 15.105 Atomic orbital electron populations 1.22096 0.99156 1.00544 0.98352 1.18824 0.91584 0.95861 0.92226 0.95150 1.21032 1.31412 1.13340 0.88413 0.90753 1.25007 0.95808 0.96627 0.95926 1.69906 1.46120 1.40501 0.97845 0.86846 0.80743 0.83978 0.76552 1.20758 1.19252 1.22810 1.22259 0.94468 0.98640 0.95017 0.89076 1.22857 0.94747 1.00417 1.01442 1.21692 1.08151 0.92816 0.92384 1.21760 1.01382 0.96022 0.93248 1.23106 0.98616 0.93000 0.94602 1.65381 1.52379 1.01800 1.04156 1.22494 0.98584 0.90848 1.01544 1.22641 0.95475 0.93400 0.94600 0.94764 0.94789 0.93114 0.92838 0.89941 0.88575 0.91133 0.91725 0.90620 0.94316 0.95695 0.91320 0.91662 0.94119 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.58 37.15 0.32 -2.92 16 2 C 0.03 0.79 1.79 -91.77 -0.16 0.63 16 3 H 0.03 0.74 4.77 -51.93 -0.25 0.49 16 4 C -0.50 -14.11 8.93 -34.44 -0.31 -14.42 16 5 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 8 Si 0.89 22.47 24.31 -169.99 -4.13 18.34 16 9 H -0.28 -6.98 6.93 56.52 0.39 -6.59 16 10 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 11 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 12 C -0.09 -1.72 4.89 -90.90 -0.44 -2.17 16 13 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 14 C -0.16 -2.88 9.79 -27.02 -0.26 -3.14 16 15 C -0.15 -2.57 2.50 -154.52 -0.39 -2.96 16 16 C -0.09 -1.23 6.77 -25.59 -0.17 -1.40 16 17 C 0.03 0.46 6.51 -2.05 -0.01 0.44 16 18 N -0.51 -7.81 5.66 -238.33 -1.35 -9.16 16 19 C 0.01 0.18 9.53 60.07 0.57 0.75 16 20 C 0.07 1.12 6.05 -2.43 -0.01 1.10 16 21 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.03 0.79 3.46 -51.93 -0.18 0.61 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.47 7.97 -51.93 -0.41 0.06 16 31 H 0.02 0.29 7.98 -51.93 -0.41 -0.13 16 32 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 35 H 0.09 1.77 5.77 -51.93 -0.30 1.47 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -29.99 270.84 -7.39 -37.38 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.79 Total: -1.23 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -0.98 Total: -22.23 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.58 Total: -36.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.13 Total: 18.34 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.99 -7.39 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.799 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds