Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47435 * 2 1 4 4 C 1.50702 * 109.47380 * 239.99561 * 2 1 3 5 5 H 1.07999 * 120.00114 * 240.00022 * 4 2 1 6 6 C 1.37874 * 119.99827 * 60.00416 * 4 2 1 7 7 N 1.31517 * 119.99853 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99991 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47154 * 270.00170 * 8 6 4 10 10 H 1.48499 * 109.46919 * 30.00377 * 8 6 4 11 11 H 1.48501 * 109.46705 * 150.00497 * 8 6 4 12 12 C 1.53005 * 109.47072 * 119.99679 * 2 1 3 13 13 H 1.08996 * 115.56323 * 40.14184 * 12 2 1 14 14 C 1.53148 * 117.51734 * 185.89728 * 12 2 1 15 15 C 1.52290 * 59.81707 * 107.43463 * 14 12 2 16 16 C 1.53621 * 121.48269 * 110.81796 * 15 14 12 17 17 C 1.54563 * 104.75408 * 143.73751 * 16 15 14 18 18 N 1.48617 * 104.64638 * 23.74622 * 17 16 15 19 19 C 1.46901 * 110.99761 * 201.28342 * 18 17 16 20 20 C 1.48727 * 104.35591 * 320.91829 * 18 17 16 21 21 H 1.08994 * 109.47567 * 293.70912 * 1 2 3 22 22 H 1.09007 * 109.46888 * 53.70785 * 1 2 3 23 23 H 1.08998 * 109.47225 * 173.70526 * 1 2 3 24 24 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 25 25 H 1.09003 * 117.51547 * 214.86757 * 14 12 2 26 26 H 1.08998 * 117.51841 * 359.95402 * 14 12 2 27 27 H 1.08999 * 110.38310 * 262.55056 * 16 15 14 28 28 H 1.08998 * 110.38917 * 24.80228 * 16 15 14 29 29 H 1.08997 * 110.40311 * 142.54255 * 17 16 15 30 30 H 1.09003 * 110.39773 * 264.95631 * 17 16 15 31 31 H 1.08995 * 109.46945 * 60.13071 * 19 18 17 32 32 H 1.09007 * 109.46385 * 180.12628 * 19 18 17 33 33 H 1.08999 * 109.46976 * 300.12391 * 19 18 17 34 34 H 1.08997 * 110.45241 * 280.10011 * 20 18 17 35 35 H 1.09004 * 110.44811 * 157.55557 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 2.1374 -0.8598 -3.5564 8 14 0.6249 1.2789 -2.6542 9 1 -0.8027 0.8726 -2.6999 10 1 0.8472 2.1764 -1.4921 11 1 0.9761 1.9948 -3.9069 12 6 2.0399 -0.7212 1.2493 13 1 1.4880 -1.6171 1.5334 14 6 3.5496 -0.7087 1.5068 15 6 2.6189 0.1342 2.3685 16 6 2.3687 -0.2032 3.8462 17 6 2.2419 1.1686 4.5471 18 7 1.8335 2.1055 3.4682 19 6 2.1508 3.4938 3.8286 20 6 2.6200 1.6693 2.2837 21 1 -0.3634 0.4132 0.9408 22 1 -0.3633 0.6083 -0.8284 23 1 -0.3633 -1.0214 -0.1127 24 1 1.9028 -0.5286 -4.4375 25 1 3.9903 -1.5962 1.9611 26 1 4.1792 -0.1874 0.7858 27 1 1.4451 -0.7716 3.9547 28 1 3.2090 -0.7641 4.2552 29 1 1.4792 1.1288 5.3248 30 1 3.2008 1.4697 4.9691 31 1 3.2249 3.5918 3.9860 32 1 1.8395 4.1585 3.0227 33 1 1.6234 3.7611 4.7443 34 1 3.6385 2.0531 2.3404 35 1 2.1380 2.0001 1.3637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259796751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = 9.378184 kcal Electronic energy + Delta-G solvation = -14331.948099 eV Core-core repulsion = 12136.779231 eV Total energy + Delta-G solvation = -2195.168868 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65084 -37.49160 -35.09688 -32.97641 -31.10678 -28.53216 -27.01768 -25.47831 -24.11752 -22.37790 -21.05733 -19.52307 -18.71052 -16.85033 -16.68432 -16.33639 -15.36231 -15.30982 -14.90208 -14.62756 -14.07678 -13.96047 -13.52537 -13.46244 -12.96497 -12.80370 -12.46147 -12.42484 -12.28647 -12.07551 -11.80956 -11.63791 -11.30896 -11.07861 -10.76394 -10.52091 -10.16968 -9.41149 -8.25951 -6.26834 1.31315 1.35498 1.46210 2.34566 2.87164 3.09714 3.26608 3.57466 3.86933 4.02659 4.18635 4.29783 4.44130 4.50692 4.56195 4.62013 4.68997 4.77471 4.86495 4.92672 4.95317 4.98242 4.99698 5.01964 5.15144 5.22303 5.31819 5.38066 5.42910 5.74903 5.81822 5.89639 6.13162 6.38830 6.80229 7.37323 8.91136 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039062 B = 0.009789 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.645174 B = 2859.780042 C = 3222.963873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 H 0.026 0.974 4 C -0.502 4.502 5 H 0.036 0.964 6 C 0.009 3.991 7 N -0.953 5.953 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.251 1.251 11 H -0.301 1.301 12 C -0.113 4.113 13 H 0.094 0.906 14 C -0.160 4.160 15 C -0.127 4.127 16 C -0.085 4.085 17 C 0.038 3.962 18 N -0.530 5.530 19 C 0.013 3.987 20 C 0.064 3.936 21 H 0.059 0.941 22 H 0.025 0.975 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 6.388 16.834 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 H 0.044 0.956 4 C -0.540 4.540 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.594 5.594 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.175 1.175 11 H -0.229 1.229 12 C -0.131 4.131 13 H 0.112 0.888 14 C -0.198 4.198 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.090 4.090 18 N -0.254 5.254 19 C -0.135 4.135 20 C -0.063 4.063 21 H 0.078 0.922 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.825 6.399 16.583 17.794 hybrid contribution 0.580 0.405 -0.865 1.117 sum -0.246 6.804 15.718 17.129 Atomic orbital electron populations 1.22009 0.97956 1.00438 0.99309 1.18720 0.92509 0.95286 0.91808 0.95610 1.21344 1.30111 1.12095 0.90496 0.94599 1.25826 0.97434 0.99817 0.95617 1.70053 1.48254 1.42657 0.98476 0.85867 0.79257 0.80485 0.76849 1.19633 1.17539 1.22906 1.22119 0.95757 0.99784 0.95457 0.88807 1.22851 0.93530 1.01614 1.01790 1.21740 1.04845 0.92761 0.93410 1.21833 1.02401 0.97203 0.90818 1.23176 1.00052 0.91563 0.94202 1.65355 1.52409 1.03505 1.04160 1.22556 0.99447 0.89217 1.02293 1.22549 0.95878 0.93145 0.94747 0.92244 0.95607 0.93401 0.92799 0.87942 0.90677 0.90777 0.89773 0.88759 0.92866 0.94855 0.91719 0.89649 0.93422 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.09 8.58 71.98 0.62 -5.47 16 2 C 0.04 1.66 1.79 -11.54 -0.02 1.64 16 3 H 0.03 1.25 4.77 -2.38 -0.01 1.24 16 4 C -0.50 -28.88 8.93 25.60 0.23 -28.65 16 5 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 6 C 0.01 0.54 5.45 84.65 0.46 1.00 16 7 N -0.95 -60.70 13.96 21.45 0.30 -60.41 16 8 Si 0.95 46.53 24.31 68.60 1.67 48.19 16 9 H -0.27 -12.73 6.93 99.48 0.69 -12.05 16 10 H -0.25 -11.56 6.53 99.48 0.65 -10.91 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 12 C -0.11 -4.47 4.89 -10.97 -0.05 -4.53 16 13 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 14 C -0.16 -5.78 9.79 30.41 0.30 -5.48 16 15 C -0.13 -4.11 2.50 -52.19 -0.13 -4.24 16 16 C -0.08 -2.11 6.77 31.34 0.21 -1.90 16 17 C 0.04 0.83 6.51 86.50 0.56 1.40 16 18 N -0.53 -14.44 5.66 -907.93 -5.14 -19.58 16 19 C 0.01 0.29 9.53 127.69 1.22 1.50 16 20 C 0.06 2.06 6.05 86.20 0.52 2.58 16 21 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.03 1.14 3.46 -2.38 -0.01 1.14 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 26 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 31 H 0.03 0.66 7.98 -2.39 -0.02 0.64 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.44 7.90 -2.39 -0.02 1.42 16 35 H 0.07 2.47 5.77 -2.38 -0.01 2.45 16 Total: -1.00 -65.20 270.84 1.71 -63.49 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.97 Total: 10.45 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.91 Total: -42.14 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -4.84 Total: -79.99 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.67 Total: 48.19 kcal Total: -65.20 1.71 -63.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.864 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds