Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46686 * 2 1 4 4 C 1.50689 * 109.47658 * 239.99313 * 2 1 3 5 5 H 1.08005 * 120.00287 * 239.99985 * 4 2 1 6 6 C 1.37878 * 120.00142 * 59.99966 * 4 2 1 7 7 N 1.31522 * 119.99952 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00297 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47180 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46923 * 119.99937 * 8 6 4 11 11 H 1.48496 * 109.47171 * 239.99636 * 8 6 4 12 12 C 1.53001 * 109.47018 * 119.99006 * 2 1 3 13 13 H 1.09000 * 115.55963 * 34.25430 * 12 2 1 14 14 C 1.53147 * 117.51816 * 248.42163 * 12 2 1 15 15 C 1.52303 * 59.81939 * 252.56555 * 14 12 2 16 16 C 1.53974 * 121.20666 * 110.60995 * 15 14 12 17 17 C 1.55097 * 102.70841 * 165.57647 * 16 15 14 18 18 N 1.48591 * 103.34138 * 323.15562 * 17 16 15 19 19 C 1.46896 * 111.00126 * 159.38255 * 18 17 16 20 20 C 1.48096 * 105.86613 * 38.83843 * 18 17 16 21 21 H 1.09006 * 109.46686 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47915 * 300.00221 * 1 2 3 23 23 H 1.09006 * 109.47221 * 60.01110 * 1 2 3 24 24 H 0.97003 * 119.99994 * 179.97438 * 7 6 4 25 25 H 1.08997 * 117.51355 * 145.13063 * 14 12 2 26 26 H 1.08992 * 117.51447 * 359.97438 * 14 12 2 27 27 H 1.08992 * 110.76615 * 47.26735 * 16 15 14 28 28 H 1.08994 * 110.75849 * 283.87502 * 16 15 14 29 29 H 1.08997 * 110.64902 * 81.62221 * 17 16 15 30 30 H 1.09003 * 110.64205 * 204.68828 * 17 16 15 31 31 H 1.09002 * 109.46800 * 60.12893 * 19 18 17 32 32 H 1.09002 * 109.47043 * 180.12110 * 19 18 17 33 33 H 1.08993 * 109.47177 * 300.13033 * 19 18 17 34 34 H 1.09003 * 110.00060 * 94.12221 * 20 18 17 35 35 H 1.09002 * 110.00300 * 215.46593 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2302 5 1 2.6534 -1.5886 -1.1310 6 6 1.6994 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6035 8 14 2.3216 -1.1208 -4.0077 9 1 3.1468 -2.2873 -3.6034 10 1 1.1664 -1.5872 -4.8158 11 1 3.1468 -0.1878 -4.8163 12 6 2.0400 -0.7210 1.2494 13 1 1.4304 -1.5575 1.5914 14 6 2.7468 0.1226 2.3143 15 6 3.5481 -0.8275 1.4341 16 6 4.5217 -0.2959 0.3663 17 6 5.3561 -1.5536 0.0090 18 7 5.5013 -2.2506 1.3132 19 6 5.8258 -3.6699 1.1183 20 6 4.2005 -2.0934 2.0034 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3635 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 0.7088 1.1609 -3.4846 25 1 2.6020 -0.1586 3.3574 26 1 2.8486 1.1910 2.1244 27 1 5.1588 0.4860 0.7792 28 1 3.9779 0.0675 -0.5057 29 1 4.8206 -2.1802 -0.7042 30 1 6.3315 -1.2684 -0.3853 31 1 6.7649 -3.7561 0.5715 32 1 5.9245 -4.1566 2.0886 33 1 5.0292 -4.1501 0.5502 34 1 3.5678 -2.9592 1.8079 35 1 4.3587 -1.9813 3.0760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259796757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = 20.064313 kcal Electronic energy + Delta-G solvation = -14519.504376 eV Core-core repulsion = 12324.798894 eV Total energy + Delta-G solvation = -2194.705482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.10973 -35.85038 -33.17798 -30.33444 -29.58070 -26.99079 -25.16852 -23.93676 -22.15373 -20.88197 -19.41678 -17.92958 -16.18646 -15.30566 -15.13808 -14.56029 -13.99629 -13.32699 -13.07120 -12.73587 -12.45752 -12.40061 -11.56130 -11.36195 -11.12191 -10.96065 -10.85792 -10.75918 -10.53209 -10.29432 -10.22581 -10.08961 -9.61316 -9.21428 -8.73585 -8.46883 -8.32647 -8.00491 -5.97328 -4.00865 3.28158 3.37118 3.39719 4.39011 4.44201 4.63371 5.08943 5.31554 5.38394 5.63015 5.64150 5.70756 5.77871 5.89507 6.00614 6.01558 6.25229 6.29960 6.37064 6.52770 6.64531 6.70397 6.79840 6.88318 6.96757 7.14926 7.28404 7.35800 7.41419 7.43784 7.75958 8.01423 8.16908 8.49358 9.01457 9.61125 11.08248 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.012702 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.156404 B = 2203.838589 C = 2915.039204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 H 0.028 0.972 4 C -0.496 4.496 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.104 4.104 13 H 0.083 0.917 14 C -0.180 4.180 15 C -0.130 4.130 16 C -0.095 4.095 17 C 0.039 3.961 18 N -0.525 5.525 19 C 0.016 3.984 20 C 0.075 3.925 21 H 0.023 0.977 22 H 0.007 0.993 23 H 0.082 0.918 24 H 0.258 0.742 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -4.315 6.051 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.046 0.954 4 C -0.534 4.534 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.122 4.122 13 H 0.101 0.899 14 C -0.217 4.217 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.088 4.088 18 N -0.249 5.249 19 C -0.133 4.133 20 C -0.052 4.052 21 H 0.042 0.958 22 H 0.026 0.974 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.904 -4.004 6.218 9.463 hybrid contribution -0.335 -0.984 -1.281 1.650 sum 5.569 -4.989 4.936 8.959 Atomic orbital electron populations 1.21775 0.98680 0.98805 1.00004 1.18324 0.92231 0.95011 0.89283 0.95427 1.21149 1.30187 1.12012 0.90083 0.92520 1.24960 0.95307 0.95070 0.98795 1.69900 1.36944 1.23045 1.23050 0.86666 0.78676 0.79824 0.83659 1.19876 1.21175 1.21058 1.22682 0.91665 0.99901 0.97949 0.89913 1.23013 1.06064 0.97285 0.95326 1.21542 0.94449 0.96905 1.00152 1.22211 0.95609 0.95639 0.99782 1.23210 0.99334 0.96056 0.90230 1.64815 1.29919 1.11495 1.18663 1.22481 1.00445 0.89471 1.00893 1.22226 0.88791 0.96161 0.98060 0.95775 0.97413 0.89968 0.93168 0.90358 0.89343 0.92558 0.86684 0.93293 0.91071 0.91769 0.91960 0.95475 0.94067 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.95 37.16 0.33 -2.92 16 2 C 0.07 1.70 1.90 -91.78 -0.17 1.52 16 3 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16 4 C -0.50 -12.95 6.01 -34.45 -0.21 -13.15 16 5 H 0.06 1.49 6.88 -52.48 -0.36 1.13 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.88 20.95 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C -0.10 -2.15 4.99 -90.90 -0.45 -2.61 16 13 H 0.08 1.69 8.11 -51.93 -0.42 1.27 16 14 C -0.18 -3.27 9.93 -27.01 -0.27 -3.54 16 15 C -0.13 -2.48 2.25 -154.52 -0.35 -2.82 16 16 C -0.10 -1.86 6.06 -25.11 -0.15 -2.01 16 17 C 0.04 0.70 6.57 -1.78 -0.01 0.69 16 18 N -0.53 -8.83 5.56 -238.80 -1.33 -10.16 16 19 C 0.02 0.23 9.41 60.06 0.57 0.79 16 20 C 0.08 1.30 6.47 -2.97 -0.02 1.28 16 21 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.12 2.59 5.20 -51.93 -0.27 2.32 16 29 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.39 8.00 -51.93 -0.42 -0.02 16 34 H 0.04 0.71 7.71 -51.93 -0.40 0.31 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 274.50 15.07 4.14 4.14 Total: -1.00 -27.08 274.50 -8.33 -35.41 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.92 Total: 0.30 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.83 Total: -21.26 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.70 Total: -34.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.08 -8.33 -35.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.479 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds