Wall clock time and date at job start Mon Mar 30 2020 02:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.46686 * 2 1
4 4 C 1.50689 * 109.47658 * 239.99313 * 2 1 3
5 5 H 1.08005 * 120.00287 * 239.99985 * 4 2 1
6 6 C 1.37878 * 120.00142 * 59.99966 * 4 2 1
7 7 N 1.31522 * 119.99952 * 359.97438 * 6 4 2
8 8 Si 1.86803 * 120.00297 * 180.02562 * 6 4 2
9 9 H 1.48499 * 109.47180 * 359.97438 * 8 6 4
10 10 H 1.48499 * 109.46923 * 119.99937 * 8 6 4
11 11 H 1.48496 * 109.47171 * 239.99636 * 8 6 4
12 12 C 1.53001 * 109.47018 * 119.99006 * 2 1 3
13 13 H 1.09000 * 115.55963 * 34.25430 * 12 2 1
14 14 C 1.53147 * 117.51816 * 248.42163 * 12 2 1
15 15 C 1.52303 * 59.81939 * 252.56555 * 14 12 2
16 16 C 1.53974 * 121.20666 * 110.60995 * 15 14 12
17 17 C 1.55097 * 102.70841 * 165.57647 * 16 15 14
18 18 N 1.48591 * 103.34138 * 323.15562 * 17 16 15
19 19 C 1.46896 * 111.00126 * 159.38255 * 18 17 16
20 20 C 1.48096 * 105.86613 * 38.83843 * 18 17 16
21 21 H 1.09006 * 109.46686 * 179.97438 * 1 2 3
22 22 H 1.08993 * 109.47915 * 300.00221 * 1 2 3
23 23 H 1.09006 * 109.47221 * 60.01110 * 1 2 3
24 24 H 0.97003 * 119.99994 * 179.97438 * 7 6 4
25 25 H 1.08997 * 117.51355 * 145.13063 * 14 12 2
26 26 H 1.08992 * 117.51447 * 359.97438 * 14 12 2
27 27 H 1.08992 * 110.76615 * 47.26735 * 16 15 14
28 28 H 1.08994 * 110.75849 * 283.87502 * 16 15 14
29 29 H 1.08997 * 110.64902 * 81.62221 * 17 16 15
30 30 H 1.09003 * 110.64205 * 204.68828 * 17 16 15
31 31 H 1.09002 * 109.46800 * 60.12893 * 19 18 17
32 32 H 1.09002 * 109.47043 * 180.12110 * 19 18 17
33 33 H 1.08993 * 109.47177 * 300.13033 * 19 18 17
34 34 H 1.09003 * 110.00060 * 94.12221 * 20 18 17
35 35 H 1.09002 * 110.00300 * 215.46593 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2302
5 1 2.6534 -1.5886 -1.1310
6 6 1.6994 -0.2396 -2.4826
7 7 0.9428 0.8294 -2.6035
8 14 2.3216 -1.1208 -4.0077
9 1 3.1468 -2.2873 -3.6034
10 1 1.1664 -1.5872 -4.8158
11 1 3.1468 -0.1878 -4.8163
12 6 2.0400 -0.7210 1.2494
13 1 1.4304 -1.5575 1.5914
14 6 2.7468 0.1226 2.3143
15 6 3.5481 -0.8275 1.4341
16 6 4.5217 -0.2959 0.3663
17 6 5.3561 -1.5536 0.0090
18 7 5.5013 -2.2506 1.3132
19 6 5.8258 -3.6699 1.1183
20 6 4.2005 -2.0934 2.0034
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3635 0.5138 0.8899
23 1 -0.3634 0.5137 -0.8901
24 1 0.7088 1.1609 -3.4846
25 1 2.6020 -0.1586 3.3574
26 1 2.8486 1.1910 2.1244
27 1 5.1588 0.4860 0.7792
28 1 3.9779 0.0675 -0.5057
29 1 4.8206 -2.1802 -0.7042
30 1 6.3315 -1.2684 -0.3853
31 1 6.7649 -3.7561 0.5715
32 1 5.9245 -4.1566 2.0886
33 1 5.0292 -4.1501 0.5502
34 1 3.5678 -2.9592 1.8079
35 1 4.3587 -1.9813 3.0760
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259796757.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:31
Heat of formation + Delta-G solvation = 20.064313 kcal
Electronic energy + Delta-G solvation = -14519.504376 eV
Core-core repulsion = 12324.798894 eV
Total energy + Delta-G solvation = -2194.705482 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.10973 -35.85038 -33.17798 -30.33444 -29.58070 -26.99079 -25.16852 -23.93676
-22.15373 -20.88197 -19.41678 -17.92958 -16.18646 -15.30566 -15.13808 -14.56029
-13.99629 -13.32699 -13.07120 -12.73587 -12.45752 -12.40061 -11.56130 -11.36195
-11.12191 -10.96065 -10.85792 -10.75918 -10.53209 -10.29432 -10.22581 -10.08961
-9.61316 -9.21428 -8.73585 -8.46883 -8.32647 -8.00491 -5.97328 -4.00865
3.28158 3.37118 3.39719 4.39011 4.44201 4.63371 5.08943 5.31554
5.38394 5.63015 5.64150 5.70756 5.77871 5.89507 6.00614 6.01558
6.25229 6.29960 6.37064 6.52770 6.64531 6.70397 6.79840 6.88318
6.96757 7.14926 7.28404 7.35800 7.41419 7.43784 7.75958 8.01423
8.16908 8.49358 9.01457 9.61125 11.08248
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.027467 B = 0.012702 C = 0.009603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1019.156404 B = 2203.838589 C = 2915.039204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.070 3.930
3 H 0.028 0.972
4 C -0.496 4.496
5 H 0.057 0.943
6 C 0.059 3.941
7 N -0.890 5.890
8 Si 0.883 3.117
9 H -0.274 1.274
10 H -0.285 1.285
11 H -0.284 1.284
12 C -0.104 4.104
13 H 0.083 0.917
14 C -0.180 4.180
15 C -0.130 4.130
16 C -0.095 4.095
17 C 0.039 3.961
18 N -0.525 5.525
19 C 0.016 3.984
20 C 0.075 3.925
21 H 0.023 0.977
22 H 0.007 0.993
23 H 0.082 0.918
24 H 0.258 0.742
25 H 0.078 0.922
26 H 0.088 0.912
27 H 0.056 0.944
28 H 0.115 0.885
29 H 0.049 0.951
30 H 0.071 0.929
31 H 0.063 0.937
32 H 0.062 0.938
33 H 0.027 0.973
34 H 0.041 0.959
35 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.540 -4.315 6.051 9.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.052 3.948
3 H 0.046 0.954
4 C -0.534 4.534
5 H 0.075 0.925
6 C -0.141 4.141
7 N -0.529 5.529
8 Si 0.712 3.288
9 H -0.199 1.199
10 H -0.212 1.212
11 H -0.211 1.211
12 C -0.122 4.122
13 H 0.101 0.899
14 C -0.217 4.217
15 C -0.130 4.130
16 C -0.132 4.132
17 C -0.088 4.088
18 N -0.249 5.249
19 C -0.133 4.133
20 C -0.052 4.052
21 H 0.042 0.958
22 H 0.026 0.974
23 H 0.100 0.900
24 H 0.068 0.932
25 H 0.096 0.904
26 H 0.107 0.893
27 H 0.074 0.926
28 H 0.133 0.867
29 H 0.067 0.933
30 H 0.089 0.911
31 H 0.082 0.918
32 H 0.080 0.920
33 H 0.045 0.955
34 H 0.059 0.941
35 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 5.904 -4.004 6.218 9.463
hybrid contribution -0.335 -0.984 -1.281 1.650
sum 5.569 -4.989 4.936 8.959
Atomic orbital electron populations
1.21775 0.98680 0.98805 1.00004 1.18324 0.92231 0.95011 0.89283
0.95427 1.21149 1.30187 1.12012 0.90083 0.92520 1.24960 0.95307
0.95070 0.98795 1.69900 1.36944 1.23045 1.23050 0.86666 0.78676
0.79824 0.83659 1.19876 1.21175 1.21058 1.22682 0.91665 0.99901
0.97949 0.89913 1.23013 1.06064 0.97285 0.95326 1.21542 0.94449
0.96905 1.00152 1.22211 0.95609 0.95639 0.99782 1.23210 0.99334
0.96056 0.90230 1.64815 1.29919 1.11495 1.18663 1.22481 1.00445
0.89471 1.00893 1.22226 0.88791 0.96161 0.98060 0.95775 0.97413
0.89968 0.93168 0.90358 0.89343 0.92558 0.86684 0.93293 0.91071
0.91769 0.91960 0.95475 0.94067 0.91264
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.25 8.95 37.16 0.33 -2.92 16
2 C 0.07 1.70 1.90 -91.78 -0.17 1.52 16
3 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16
4 C -0.50 -12.95 6.01 -34.45 -0.21 -13.15 16
5 H 0.06 1.49 6.88 -52.48 -0.36 1.13 16
6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16
7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16
8 Si 0.88 20.95 29.54 -169.99 -5.02 15.92 16
9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
12 C -0.10 -2.15 4.99 -90.90 -0.45 -2.61 16
13 H 0.08 1.69 8.11 -51.93 -0.42 1.27 16
14 C -0.18 -3.27 9.93 -27.01 -0.27 -3.54 16
15 C -0.13 -2.48 2.25 -154.52 -0.35 -2.82 16
16 C -0.10 -1.86 6.06 -25.11 -0.15 -2.01 16
17 C 0.04 0.70 6.57 -1.78 -0.01 0.69 16
18 N -0.53 -8.83 5.56 -238.80 -1.33 -10.16 16
19 C 0.02 0.23 9.41 60.06 0.57 0.79 16
20 C 0.08 1.30 6.47 -2.97 -0.02 1.28 16
21 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
22 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16
23 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16
24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
25 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
26 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16
27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
28 H 0.12 2.59 5.20 -51.93 -0.27 2.32 16
29 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16
30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.03 0.39 8.00 -51.93 -0.42 -0.02 16
34 H 0.04 0.71 7.71 -51.93 -0.40 0.31 16
35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 274.50 15.07 4.14 4.14
Total: -1.00 -27.08 274.50 -8.33 -35.41
By element:
Atomic # 1 Polarization: 6.22 SS G_CDS: -5.92 Total: 0.30 kcal
Atomic # 6 Polarization: -20.43 SS G_CDS: -0.83 Total: -21.26 kcal
Atomic # 7 Polarization: -33.81 SS G_CDS: -0.70 Total: -34.51 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 4.14 Total: 4.14 kcal
Total: -27.08 -8.33 -35.41 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259796757.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.479 kcal
(2) G-P(sol) polarization free energy of solvation -27.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.399 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.064 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds