Wall clock time and date at job start Mon Mar 30 2020 02:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.46686 * 2 1
4 4 C 1.50689 * 109.47658 * 239.99313 * 2 1 3
5 5 H 1.08005 * 120.00287 * 239.99985 * 4 2 1
6 6 C 1.37878 * 120.00142 * 59.99966 * 4 2 1
7 7 N 1.31522 * 119.99952 * 359.97438 * 6 4 2
8 8 Si 1.86803 * 120.00297 * 180.02562 * 6 4 2
9 9 H 1.48499 * 109.47180 * 359.97438 * 8 6 4
10 10 H 1.48499 * 109.46923 * 119.99937 * 8 6 4
11 11 H 1.48496 * 109.47171 * 239.99636 * 8 6 4
12 12 C 1.53001 * 109.47018 * 119.99006 * 2 1 3
13 13 H 1.09000 * 115.55963 * 34.25430 * 12 2 1
14 14 C 1.53147 * 117.51816 * 248.42163 * 12 2 1
15 15 C 1.52303 * 59.81939 * 252.56555 * 14 12 2
16 16 C 1.53974 * 121.20666 * 110.60995 * 15 14 12
17 17 C 1.55097 * 102.70841 * 165.57647 * 16 15 14
18 18 N 1.48591 * 103.34138 * 323.15562 * 17 16 15
19 19 C 1.46896 * 111.00126 * 159.38255 * 18 17 16
20 20 C 1.48096 * 105.86613 * 38.83843 * 18 17 16
21 21 H 1.09006 * 109.46686 * 179.97438 * 1 2 3
22 22 H 1.08993 * 109.47915 * 300.00221 * 1 2 3
23 23 H 1.09006 * 109.47221 * 60.01110 * 1 2 3
24 24 H 0.97003 * 119.99994 * 179.97438 * 7 6 4
25 25 H 1.08997 * 117.51355 * 145.13063 * 14 12 2
26 26 H 1.08992 * 117.51447 * 359.97438 * 14 12 2
27 27 H 1.08992 * 110.76615 * 47.26735 * 16 15 14
28 28 H 1.08994 * 110.75849 * 283.87502 * 16 15 14
29 29 H 1.08997 * 110.64902 * 81.62221 * 17 16 15
30 30 H 1.09003 * 110.64205 * 204.68828 * 17 16 15
31 31 H 1.09002 * 109.46800 * 60.12893 * 19 18 17
32 32 H 1.09002 * 109.47043 * 180.12110 * 19 18 17
33 33 H 1.08993 * 109.47177 * 300.13033 * 19 18 17
34 34 H 1.09003 * 110.00060 * 94.12221 * 20 18 17
35 35 H 1.09002 * 110.00300 * 215.46593 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2302
5 1 2.6534 -1.5886 -1.1310
6 6 1.6994 -0.2396 -2.4826
7 7 0.9428 0.8294 -2.6035
8 14 2.3216 -1.1208 -4.0077
9 1 3.1468 -2.2873 -3.6034
10 1 1.1664 -1.5872 -4.8158
11 1 3.1468 -0.1878 -4.8163
12 6 2.0400 -0.7210 1.2494
13 1 1.4304 -1.5575 1.5914
14 6 2.7468 0.1226 2.3143
15 6 3.5481 -0.8275 1.4341
16 6 4.5217 -0.2959 0.3663
17 6 5.3561 -1.5536 0.0090
18 7 5.5013 -2.2506 1.3132
19 6 5.8258 -3.6699 1.1183
20 6 4.2005 -2.0934 2.0034
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3635 0.5138 0.8899
23 1 -0.3634 0.5137 -0.8901
24 1 0.7088 1.1609 -3.4846
25 1 2.6020 -0.1586 3.3574
26 1 2.8486 1.1910 2.1244
27 1 5.1588 0.4860 0.7792
28 1 3.9779 0.0675 -0.5057
29 1 4.8206 -2.1802 -0.7042
30 1 6.3315 -1.2684 -0.3853
31 1 6.7649 -3.7561 0.5715
32 1 5.9245 -4.1566 2.0886
33 1 5.0292 -4.1501 0.5502
34 1 3.5678 -2.9592 1.8079
35 1 4.3587 -1.9813 3.0760
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259796757.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:31
Heat of formation + Delta-G solvation = 4.482835 kcal
Electronic energy + Delta-G solvation = -14520.180040 eV
Core-core repulsion = 12324.798894 eV
Total energy + Delta-G solvation = -2195.381146 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.59324 -37.38517 -35.07538 -32.11064 -31.15259 -28.35149 -27.18356 -25.30451
-23.93213 -22.32596 -21.03313 -19.53780 -18.21858 -16.79340 -16.62337 -16.36210
-15.33911 -14.91536 -14.71193 -14.44119 -14.00851 -13.72142 -13.30586 -13.16225
-12.83210 -12.59215 -12.35410 -12.33004 -12.21113 -12.13243 -11.95304 -11.75333
-11.34249 -11.06319 -10.45947 -10.38634 -10.12107 -9.37021 -8.03642 -6.11922
1.37790 1.41469 1.50313 2.43848 3.04203 3.16747 3.24653 3.64648
4.01551 4.17366 4.20629 4.37595 4.51182 4.55093 4.66227 4.78055
4.82664 4.91141 4.96870 4.99391 5.02090 5.06680 5.16474 5.20961
5.29294 5.44145 5.48685 5.62326 5.70134 5.91714 6.02734 6.13161
6.17618 6.46160 6.95897 7.52226 9.01267
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.027467 B = 0.012702 C = 0.009603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1019.156404 B = 2203.838589 C = 2915.039204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.071 3.929
3 H -0.003 1.003
4 C -0.493 4.493
5 H 0.051 0.949
6 C 0.012 3.988
7 N -0.920 5.920
8 Si 0.939 3.061
9 H -0.268 1.268
10 H -0.285 1.285
11 H -0.283 1.283
12 C -0.125 4.125
13 H 0.088 0.912
14 C -0.159 4.159
15 C -0.131 4.131
16 C -0.097 4.097
17 C 0.044 3.956
18 N -0.526 5.526
19 C 0.015 3.985
20 C 0.079 3.921
21 H 0.025 0.975
22 H 0.027 0.973
23 H 0.054 0.946
24 H 0.257 0.743
25 H 0.109 0.891
26 H 0.082 0.918
27 H 0.065 0.935
28 H 0.079 0.921
29 H 0.029 0.971
30 H 0.087 0.913
31 H 0.078 0.922
32 H 0.083 0.917
33 H 0.019 0.981
34 H 0.039 0.961
35 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.724 -5.490 7.277 11.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.053 3.947
3 H 0.015 0.985
4 C -0.531 4.531
5 H 0.069 0.931
6 C -0.186 4.186
7 N -0.561 5.561
8 Si 0.766 3.234
9 H -0.193 1.193
10 H -0.212 1.212
11 H -0.209 1.209
12 C -0.143 4.143
13 H 0.106 0.894
14 C -0.196 4.196
15 C -0.132 4.132
16 C -0.135 4.135
17 C -0.084 4.084
18 N -0.250 5.250
19 C -0.134 4.134
20 C -0.049 4.049
21 H 0.044 0.956
22 H 0.046 0.954
23 H 0.073 0.927
24 H 0.067 0.933
25 H 0.127 0.873
26 H 0.101 0.899
27 H 0.083 0.917
28 H 0.098 0.902
29 H 0.047 0.953
30 H 0.105 0.895
31 H 0.096 0.904
32 H 0.101 0.899
33 H 0.037 0.963
34 H 0.057 0.943
35 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 7.095 -5.192 7.450 11.524
hybrid contribution -0.694 -0.599 -1.636 1.875
sum 6.401 -5.791 5.815 10.408
Atomic orbital electron populations
1.21650 0.98666 0.98681 0.99583 1.18197 0.92246 0.93561 0.90714
0.98464 1.21335 1.29328 1.11488 0.90976 0.93089 1.25620 0.95766
0.95798 1.01423 1.70024 1.38269 1.24382 1.23424 0.85788 0.78112
0.78932 0.80588 1.19281 1.21154 1.20861 1.22454 0.93163 1.00955
0.97740 0.89374 1.23053 1.03666 0.96689 0.96201 1.21645 0.93155
0.98140 1.00241 1.22108 0.95956 0.96715 0.98718 1.23128 0.99524
0.95084 0.90628 1.64858 1.29452 1.13176 1.17540 1.22579 1.00762
0.87777 1.02268 1.22246 0.88771 0.94806 0.99067 0.95598 0.95442
0.92728 0.93335 0.87293 0.89929 0.91662 0.90227 0.95298 0.89458
0.90365 0.89871 0.96261 0.94267 0.89226
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.22 8.95 71.98 0.64 -5.57 16
2 C 0.07 3.50 1.90 -11.54 -0.02 3.48 16
3 H 0.00 -0.15 7.90 -2.38 -0.02 -0.17 16
4 C -0.49 -26.11 6.01 25.60 0.15 -25.95 16
5 H 0.05 2.71 6.88 -2.91 -0.02 2.69 16
6 C 0.01 0.63 5.30 84.65 0.45 1.08 16
7 N -0.92 -52.90 11.32 21.45 0.24 -52.65 16
8 Si 0.94 43.47 29.54 68.60 2.03 45.50 16
9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16
11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16
12 C -0.12 -5.07 4.99 -10.97 -0.05 -5.12 16
13 H 0.09 3.47 8.11 -2.39 -0.02 3.45 16
14 C -0.16 -5.45 9.93 30.41 0.30 -5.15 16
15 C -0.13 -4.79 2.25 -52.19 -0.12 -4.91 16
16 C -0.10 -3.74 6.06 31.64 0.19 -3.55 16
17 C 0.04 1.52 6.57 86.69 0.57 2.09 16
18 N -0.53 -16.28 5.56 -909.41 -5.06 -21.34 16
19 C 0.01 0.37 9.41 127.69 1.20 1.57 16
20 C 0.08 2.49 6.47 86.20 0.56 3.05 16
21 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16
22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
23 H 0.05 2.95 6.07 -2.38 -0.01 2.94 16
24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16
25 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16
26 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16
27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16
28 H 0.08 3.65 5.20 -2.39 -0.01 3.64 16
29 H 0.03 1.10 7.56 -2.39 -0.02 1.08 16
30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16
31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.02 0.51 8.00 -2.39 -0.02 0.49 16
34 H 0.04 1.26 7.71 -2.39 -0.02 1.24 16
35 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16
Total: -1.00 -57.59 274.50 2.12 -55.46
By element:
Atomic # 1 Polarization: 10.99 SS G_CDS: 1.03 Total: 12.03 kcal
Atomic # 6 Polarization: -42.87 SS G_CDS: 3.88 Total: -38.99 kcal
Atomic # 7 Polarization: -69.18 SS G_CDS: -4.81 Total: -73.99 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal
Total: -57.59 2.12 -55.46 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259796757.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.946 kcal
(2) G-P(sol) polarization free energy of solvation -57.588 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.358 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds