Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46686 * 2 1 4 4 C 1.50689 * 109.47658 * 239.99313 * 2 1 3 5 5 H 1.08005 * 120.00287 * 239.99985 * 4 2 1 6 6 C 1.37878 * 120.00142 * 59.99966 * 4 2 1 7 7 N 1.31522 * 119.99952 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00297 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47180 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46923 * 119.99937 * 8 6 4 11 11 H 1.48496 * 109.47171 * 239.99636 * 8 6 4 12 12 C 1.53001 * 109.47018 * 119.99006 * 2 1 3 13 13 H 1.09000 * 115.55963 * 34.25430 * 12 2 1 14 14 C 1.53147 * 117.51816 * 248.42163 * 12 2 1 15 15 C 1.52303 * 59.81939 * 252.56555 * 14 12 2 16 16 C 1.53974 * 121.20666 * 110.60995 * 15 14 12 17 17 C 1.55097 * 102.70841 * 165.57647 * 16 15 14 18 18 N 1.48591 * 103.34138 * 323.15562 * 17 16 15 19 19 C 1.46896 * 111.00126 * 159.38255 * 18 17 16 20 20 C 1.48096 * 105.86613 * 38.83843 * 18 17 16 21 21 H 1.09006 * 109.46686 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47915 * 300.00221 * 1 2 3 23 23 H 1.09006 * 109.47221 * 60.01110 * 1 2 3 24 24 H 0.97003 * 119.99994 * 179.97438 * 7 6 4 25 25 H 1.08997 * 117.51355 * 145.13063 * 14 12 2 26 26 H 1.08992 * 117.51447 * 359.97438 * 14 12 2 27 27 H 1.08992 * 110.76615 * 47.26735 * 16 15 14 28 28 H 1.08994 * 110.75849 * 283.87502 * 16 15 14 29 29 H 1.08997 * 110.64902 * 81.62221 * 17 16 15 30 30 H 1.09003 * 110.64205 * 204.68828 * 17 16 15 31 31 H 1.09002 * 109.46800 * 60.12893 * 19 18 17 32 32 H 1.09002 * 109.47043 * 180.12110 * 19 18 17 33 33 H 1.08993 * 109.47177 * 300.13033 * 19 18 17 34 34 H 1.09003 * 110.00060 * 94.12221 * 20 18 17 35 35 H 1.09002 * 110.00300 * 215.46593 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2302 5 1 2.6534 -1.5886 -1.1310 6 6 1.6994 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6035 8 14 2.3216 -1.1208 -4.0077 9 1 3.1468 -2.2873 -3.6034 10 1 1.1664 -1.5872 -4.8158 11 1 3.1468 -0.1878 -4.8163 12 6 2.0400 -0.7210 1.2494 13 1 1.4304 -1.5575 1.5914 14 6 2.7468 0.1226 2.3143 15 6 3.5481 -0.8275 1.4341 16 6 4.5217 -0.2959 0.3663 17 6 5.3561 -1.5536 0.0090 18 7 5.5013 -2.2506 1.3132 19 6 5.8258 -3.6699 1.1183 20 6 4.2005 -2.0934 2.0034 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3635 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 0.7088 1.1609 -3.4846 25 1 2.6020 -0.1586 3.3574 26 1 2.8486 1.1910 2.1244 27 1 5.1588 0.4860 0.7792 28 1 3.9779 0.0675 -0.5057 29 1 4.8206 -2.1802 -0.7042 30 1 6.3315 -1.2684 -0.3853 31 1 6.7649 -3.7561 0.5715 32 1 5.9245 -4.1566 2.0886 33 1 5.0292 -4.1501 0.5502 34 1 3.5678 -2.9592 1.8079 35 1 4.3587 -1.9813 3.0760 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259796757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = 4.482835 kcal Electronic energy + Delta-G solvation = -14520.180040 eV Core-core repulsion = 12324.798894 eV Total energy + Delta-G solvation = -2195.381146 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59324 -37.38517 -35.07538 -32.11064 -31.15259 -28.35149 -27.18356 -25.30451 -23.93213 -22.32596 -21.03313 -19.53780 -18.21858 -16.79340 -16.62337 -16.36210 -15.33911 -14.91536 -14.71193 -14.44119 -14.00851 -13.72142 -13.30586 -13.16225 -12.83210 -12.59215 -12.35410 -12.33004 -12.21113 -12.13243 -11.95304 -11.75333 -11.34249 -11.06319 -10.45947 -10.38634 -10.12107 -9.37021 -8.03642 -6.11922 1.37790 1.41469 1.50313 2.43848 3.04203 3.16747 3.24653 3.64648 4.01551 4.17366 4.20629 4.37595 4.51182 4.55093 4.66227 4.78055 4.82664 4.91141 4.96870 4.99391 5.02090 5.06680 5.16474 5.20961 5.29294 5.44145 5.48685 5.62326 5.70134 5.91714 6.02734 6.13161 6.17618 6.46160 6.95897 7.52226 9.01267 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.012702 C = 0.009603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.156404 B = 2203.838589 C = 2915.039204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.071 3.929 3 H -0.003 1.003 4 C -0.493 4.493 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.939 3.061 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.283 1.283 12 C -0.125 4.125 13 H 0.088 0.912 14 C -0.159 4.159 15 C -0.131 4.131 16 C -0.097 4.097 17 C 0.044 3.956 18 N -0.526 5.526 19 C 0.015 3.985 20 C 0.079 3.921 21 H 0.025 0.975 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.257 0.743 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.039 0.961 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -5.490 7.277 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.053 3.947 3 H 0.015 0.985 4 C -0.531 4.531 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.766 3.234 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.209 1.209 12 C -0.143 4.143 13 H 0.106 0.894 14 C -0.196 4.196 15 C -0.132 4.132 16 C -0.135 4.135 17 C -0.084 4.084 18 N -0.250 5.250 19 C -0.134 4.134 20 C -0.049 4.049 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.127 0.873 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.095 -5.192 7.450 11.524 hybrid contribution -0.694 -0.599 -1.636 1.875 sum 6.401 -5.791 5.815 10.408 Atomic orbital electron populations 1.21650 0.98666 0.98681 0.99583 1.18197 0.92246 0.93561 0.90714 0.98464 1.21335 1.29328 1.11488 0.90976 0.93089 1.25620 0.95766 0.95798 1.01423 1.70024 1.38269 1.24382 1.23424 0.85788 0.78112 0.78932 0.80588 1.19281 1.21154 1.20861 1.22454 0.93163 1.00955 0.97740 0.89374 1.23053 1.03666 0.96689 0.96201 1.21645 0.93155 0.98140 1.00241 1.22108 0.95956 0.96715 0.98718 1.23128 0.99524 0.95084 0.90628 1.64858 1.29452 1.13176 1.17540 1.22579 1.00762 0.87777 1.02268 1.22246 0.88771 0.94806 0.99067 0.95598 0.95442 0.92728 0.93335 0.87293 0.89929 0.91662 0.90227 0.95298 0.89458 0.90365 0.89871 0.96261 0.94267 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.95 71.98 0.64 -5.57 16 2 C 0.07 3.50 1.90 -11.54 -0.02 3.48 16 3 H 0.00 -0.15 7.90 -2.38 -0.02 -0.17 16 4 C -0.49 -26.11 6.01 25.60 0.15 -25.95 16 5 H 0.05 2.71 6.88 -2.91 -0.02 2.69 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -52.90 11.32 21.45 0.24 -52.65 16 8 Si 0.94 43.47 29.54 68.60 2.03 45.50 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 C -0.12 -5.07 4.99 -10.97 -0.05 -5.12 16 13 H 0.09 3.47 8.11 -2.39 -0.02 3.45 16 14 C -0.16 -5.45 9.93 30.41 0.30 -5.15 16 15 C -0.13 -4.79 2.25 -52.19 -0.12 -4.91 16 16 C -0.10 -3.74 6.06 31.64 0.19 -3.55 16 17 C 0.04 1.52 6.57 86.69 0.57 2.09 16 18 N -0.53 -16.28 5.56 -909.41 -5.06 -21.34 16 19 C 0.01 0.37 9.41 127.69 1.20 1.57 16 20 C 0.08 2.49 6.47 86.20 0.56 3.05 16 21 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 2.95 6.07 -2.38 -0.01 2.94 16 24 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.08 3.65 5.20 -2.39 -0.01 3.64 16 29 H 0.03 1.10 7.56 -2.39 -0.02 1.08 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.02 0.51 8.00 -2.39 -0.02 0.49 16 34 H 0.04 1.26 7.71 -2.39 -0.02 1.24 16 35 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -57.59 274.50 2.12 -55.46 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.03 Total: 12.03 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 3.88 Total: -38.99 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -4.81 Total: -73.99 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -57.59 2.12 -55.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.946 kcal (2) G-P(sol) polarization free energy of solvation -57.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds