Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47082 * 2 1 4 4 C 1.50700 * 109.47094 * 120.00054 * 2 1 3 5 5 H 1.08003 * 120.00077 * 120.00308 * 4 2 1 6 6 C 1.37878 * 120.00014 * 299.99717 * 4 2 1 7 7 N 1.31508 * 120.00248 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46975 * 90.00229 * 8 6 4 10 10 H 1.48501 * 109.47254 * 210.00284 * 8 6 4 11 11 H 1.48500 * 109.47185 * 330.00530 * 8 6 4 12 12 C 1.52995 * 109.47415 * 240.00008 * 2 1 3 13 13 H 1.09002 * 115.55452 * 320.15007 * 12 2 1 14 14 C 1.53040 * 117.51029 * 174.44455 * 12 2 1 15 15 C 1.52766 * 117.51016 * 105.84961 * 12 2 1 16 16 C 1.53223 * 117.78872 * 359.68057 * 15 12 2 17 17 C 1.53262 * 108.61868 * 266.00635 * 16 15 12 18 18 N 1.46812 * 109.44394 * 304.40271 * 17 16 15 19 19 C 1.46810 * 111.57179 * 64.83370 * 18 17 16 20 20 C 1.53215 * 117.79795 * 215.33059 * 15 12 2 21 21 H 1.09001 * 109.46795 * 305.31155 * 1 2 3 22 22 H 1.08998 * 109.46931 * 65.30939 * 1 2 3 23 23 H 1.08997 * 109.46744 * 185.31143 * 1 2 3 24 24 H 0.97001 * 120.00287 * 179.97438 * 7 6 4 25 25 H 1.08997 * 117.50356 * 359.97390 * 14 12 2 26 26 H 1.09001 * 117.50332 * 144.99597 * 14 12 2 27 27 H 1.09004 * 109.61200 * 25.74481 * 16 15 12 28 28 H 1.09002 * 109.61132 * 146.26271 * 16 15 12 29 29 H 1.09002 * 109.47229 * 184.41860 * 17 16 15 30 30 H 1.08996 * 109.48244 * 64.40241 * 17 16 15 31 31 H 1.00902 * 110.99457 * 189.20016 * 18 17 16 32 32 H 1.09000 * 109.47901 * 175.17898 * 19 18 17 33 33 H 1.09004 * 109.47777 * 55.16063 * 19 18 17 34 34 H 1.08995 * 109.61171 * 213.73233 * 20 15 12 35 35 H 1.09000 * 109.61044 * 334.25545 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7119 12 6 2.0400 -0.7212 -1.2492 13 1 1.4850 -1.6144 -1.5360 14 6 3.5494 -0.7154 -1.5020 15 6 2.6242 0.1366 -2.3702 16 6 2.6509 1.6552 -2.1677 17 6 1.3896 2.2552 -2.7986 18 7 1.3102 1.8542 -4.2086 19 6 1.1366 0.4031 -4.3481 20 6 2.3820 -0.3135 -3.8146 21 1 -0.3633 0.5940 0.8386 22 1 -0.3633 0.4293 -0.9337 23 1 -0.3633 -1.0232 0.0951 24 1 0.7082 1.1608 3.4845 25 1 4.1790 -0.1974 -0.7786 26 1 3.9874 -1.6051 -1.9546 27 1 2.6701 1.8819 -1.1016 28 1 3.5351 2.0730 -2.6491 29 1 1.4319 3.3424 -2.7319 30 1 0.5096 1.8925 -2.2674 31 1 0.5749 2.3539 -4.6858 32 1 0.9962 0.1532 -5.3998 33 1 0.2628 0.0852 -3.7792 34 1 3.2445 -0.0538 -4.4282 35 1 2.2229 -1.3915 -3.8400 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = 8.224125 kcal Electronic energy + Delta-G solvation = -14485.627417 eV Core-core repulsion = 12290.408506 eV Total energy + Delta-G solvation = -2195.218911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.06420 -35.54847 -33.21672 -30.70929 -29.94840 -27.96629 -25.01076 -22.88386 -22.15320 -21.26947 -19.58536 -17.44985 -16.42659 -15.88866 -14.68511 -14.31538 -14.09789 -13.77295 -13.47340 -12.58962 -12.41358 -12.07381 -11.80300 -11.46180 -11.13881 -11.06258 -10.86405 -10.79499 -10.61140 -10.29864 -10.05607 -9.91733 -9.43846 -8.98812 -8.76586 -8.35708 -8.25734 -8.10201 -5.93330 -3.97591 3.32791 3.39518 3.43087 4.42622 4.50012 4.67095 5.20713 5.28980 5.37584 5.59183 5.60306 5.77625 5.82835 5.91305 6.01162 6.11055 6.21963 6.36593 6.40036 6.50473 6.62135 6.73444 6.76358 6.92128 7.00737 7.02714 7.30772 7.34797 7.45738 7.63280 7.79744 8.08015 8.17446 8.53756 9.06029 9.66126 11.12810 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.048910 B = 0.008915 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.345550 B = 3140.023308 C = 3354.486204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.066 3.934 3 H 0.036 0.964 4 C -0.503 4.503 5 H 0.054 0.946 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.107 4.107 13 H 0.080 0.920 14 C -0.169 4.169 15 C -0.141 4.141 16 C -0.079 4.079 17 C 0.061 3.939 18 N -0.693 5.693 19 C 0.063 3.937 20 C -0.074 4.074 21 H 0.077 0.923 22 H 0.003 0.997 23 H 0.023 0.977 24 H 0.258 0.742 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.334 0.666 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 0.629 -10.511 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.125 4.125 13 H 0.098 0.902 14 C -0.206 4.206 15 C -0.141 4.141 16 C -0.117 4.117 17 C -0.068 4.068 18 N -0.323 5.323 19 C -0.066 4.066 20 C -0.111 4.111 21 H 0.096 0.904 22 H 0.022 0.978 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.189 0.704 -10.438 10.529 hybrid contribution -0.615 -0.678 1.184 1.496 sum 0.574 0.025 -9.254 9.272 Atomic orbital electron populations 1.21742 0.98888 0.99430 0.98655 1.18416 0.92096 0.95510 0.89201 0.94594 1.21183 1.30471 1.12139 0.90367 0.92731 1.24956 0.95272 0.95088 0.98844 1.69894 1.37127 1.23165 1.23091 0.86660 0.78532 0.80140 0.83041 1.20818 1.21382 1.20042 1.22676 0.94089 0.98992 0.96754 0.90203 1.22862 0.94873 1.00698 1.02197 1.21517 1.07357 0.93488 0.91734 1.21220 0.96649 0.92600 1.01197 1.21928 0.98464 0.98963 0.87409 1.60166 1.51609 1.06047 1.14511 1.21868 0.97323 0.88060 0.99397 1.21120 0.97333 0.98184 0.94492 0.90401 0.97798 0.95739 0.93205 0.88992 0.90675 0.89786 0.92318 0.91564 0.94297 0.84918 0.91727 0.95057 0.91833 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.89 37.16 0.33 -2.83 16 2 C 0.07 1.62 2.22 -91.77 -0.20 1.42 16 3 H 0.04 0.95 5.32 -51.93 -0.28 0.67 16 4 C -0.50 -13.80 8.35 -34.44 -0.29 -14.09 16 5 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.60 11.38 55.43 0.63 -24.97 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C -0.11 -2.25 4.70 -90.72 -0.43 -2.68 16 13 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 14 C -0.17 -3.26 9.49 -26.80 -0.25 -3.51 16 15 C -0.14 -2.55 2.02 -154.49 -0.31 -2.86 16 16 C -0.08 -1.42 5.49 -26.48 -0.15 -1.56 16 17 C 0.06 0.99 6.55 -3.74 -0.02 0.96 16 18 N -0.69 -9.90 6.77 -113.61 -0.77 -10.67 16 19 C 0.06 0.90 6.55 -3.74 -0.02 0.87 16 20 C -0.07 -1.14 5.87 -26.48 -0.16 -1.29 16 21 H 0.08 2.08 6.23 -51.93 -0.32 1.76 16 22 H 0.00 0.07 7.25 -51.93 -0.38 -0.31 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.69 5.63 -51.93 -0.29 1.40 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.70 7.23 -51.93 -0.38 0.32 16 31 H 0.33 4.00 8.90 -39.29 -0.35 3.65 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 LS Contribution 272.38 15.07 4.10 4.10 Total: -1.00 -28.18 272.38 -8.41 -36.59 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.76 Total: 2.47 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -1.60 Total: -24.02 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.14 Total: -35.63 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.18 -8.41 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.810 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds