Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47082 * 2 1 4 4 C 1.50700 * 109.47094 * 120.00054 * 2 1 3 5 5 H 1.08003 * 120.00077 * 120.00308 * 4 2 1 6 6 C 1.37878 * 120.00014 * 299.99717 * 4 2 1 7 7 N 1.31508 * 120.00248 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46975 * 90.00229 * 8 6 4 10 10 H 1.48501 * 109.47254 * 210.00284 * 8 6 4 11 11 H 1.48500 * 109.47185 * 330.00530 * 8 6 4 12 12 C 1.52995 * 109.47415 * 240.00008 * 2 1 3 13 13 H 1.09002 * 115.55452 * 320.15007 * 12 2 1 14 14 C 1.53040 * 117.51029 * 174.44455 * 12 2 1 15 15 C 1.52766 * 117.51016 * 105.84961 * 12 2 1 16 16 C 1.53223 * 117.78872 * 359.68057 * 15 12 2 17 17 C 1.53262 * 108.61868 * 266.00635 * 16 15 12 18 18 N 1.46812 * 109.44394 * 304.40271 * 17 16 15 19 19 C 1.46810 * 111.57179 * 64.83370 * 18 17 16 20 20 C 1.53215 * 117.79795 * 215.33059 * 15 12 2 21 21 H 1.09001 * 109.46795 * 305.31155 * 1 2 3 22 22 H 1.08998 * 109.46931 * 65.30939 * 1 2 3 23 23 H 1.08997 * 109.46744 * 185.31143 * 1 2 3 24 24 H 0.97001 * 120.00287 * 179.97438 * 7 6 4 25 25 H 1.08997 * 117.50356 * 359.97390 * 14 12 2 26 26 H 1.09001 * 117.50332 * 144.99597 * 14 12 2 27 27 H 1.09004 * 109.61200 * 25.74481 * 16 15 12 28 28 H 1.09002 * 109.61132 * 146.26271 * 16 15 12 29 29 H 1.09002 * 109.47229 * 184.41860 * 17 16 15 30 30 H 1.08996 * 109.48244 * 64.40241 * 17 16 15 31 31 H 1.00902 * 110.99457 * 189.20016 * 18 17 16 32 32 H 1.09000 * 109.47901 * 175.17898 * 19 18 17 33 33 H 1.09004 * 109.47777 * 55.16063 * 19 18 17 34 34 H 1.08995 * 109.61171 * 213.73233 * 20 15 12 35 35 H 1.09000 * 109.61044 * 334.25545 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7119 12 6 2.0400 -0.7212 -1.2492 13 1 1.4850 -1.6144 -1.5360 14 6 3.5494 -0.7154 -1.5020 15 6 2.6242 0.1366 -2.3702 16 6 2.6509 1.6552 -2.1677 17 6 1.3896 2.2552 -2.7986 18 7 1.3102 1.8542 -4.2086 19 6 1.1366 0.4031 -4.3481 20 6 2.3820 -0.3135 -3.8146 21 1 -0.3633 0.5940 0.8386 22 1 -0.3633 0.4293 -0.9337 23 1 -0.3633 -1.0232 0.0951 24 1 0.7082 1.1608 3.4845 25 1 4.1790 -0.1974 -0.7786 26 1 3.9874 -1.6051 -1.9546 27 1 2.6701 1.8819 -1.1016 28 1 3.5351 2.0730 -2.6491 29 1 1.4319 3.3424 -2.7319 30 1 0.5096 1.8925 -2.2674 31 1 0.5749 2.3539 -4.6858 32 1 0.9962 0.1532 -5.3998 33 1 0.2628 0.0852 -3.7792 34 1 3.2445 -0.0538 -4.4282 35 1 2.2229 -1.3915 -3.8400 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -8.587450 kcal Electronic energy + Delta-G solvation = -14486.356422 eV Core-core repulsion = 12290.408506 eV Total energy + Delta-G solvation = -2195.947916 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52284 -37.01629 -35.12607 -32.30099 -31.59485 -29.38255 -27.12959 -24.31511 -23.78768 -22.61118 -21.30507 -18.95504 -18.28497 -17.37807 -16.65158 -15.70028 -15.43427 -15.22356 -15.11590 -14.44250 -13.78750 -13.51234 -13.42017 -13.12450 -12.87370 -12.85267 -12.73576 -12.37555 -12.15652 -12.15298 -11.87411 -11.45332 -11.15290 -10.84545 -10.37122 -10.32161 -10.08543 -9.32230 -8.05596 -6.16847 1.39678 1.40746 1.50475 2.43711 3.07483 3.21560 3.38246 3.83774 4.01489 4.15016 4.23459 4.35817 4.54078 4.62561 4.70631 4.76024 4.81308 4.93034 4.97824 5.01572 5.06164 5.12433 5.16292 5.25831 5.37812 5.45343 5.51546 5.59341 5.65533 6.06567 6.12159 6.13758 6.44909 6.59737 6.94340 7.49900 8.98965 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.048910 B = 0.008915 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.345550 B = 3140.023308 C = 3354.486204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.067 3.933 3 H 0.014 0.986 4 C -0.519 4.519 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.271 1.271 12 C -0.128 4.128 13 H 0.081 0.919 14 C -0.169 4.169 15 C -0.120 4.120 16 C -0.081 4.081 17 C 0.067 3.933 18 N -0.687 5.687 19 C 0.062 3.938 20 C -0.072 4.072 21 H 0.050 0.950 22 H 0.022 0.978 23 H 0.019 0.981 24 H 0.258 0.742 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.016 0.984 31 H 0.351 0.649 32 H 0.096 0.904 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 0.156 -12.108 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.049 3.951 3 H 0.032 0.968 4 C -0.558 4.558 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.195 1.195 12 C -0.146 4.146 13 H 0.099 0.901 14 C -0.206 4.206 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.062 4.062 18 N -0.320 5.320 19 C -0.067 4.067 20 C -0.109 4.109 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.170 0.830 32 H 0.114 0.886 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.624 0.231 -12.050 12.161 hybrid contribution -0.744 -0.502 1.660 1.887 sum 0.880 -0.271 -10.391 10.431 Atomic orbital electron populations 1.21567 0.98912 0.98593 0.98432 1.18292 0.92038 0.94509 0.90290 0.96774 1.21522 1.30358 1.12065 0.91816 0.93353 1.25695 0.95568 0.95830 1.01678 1.70023 1.38033 1.24300 1.23616 0.85708 0.78058 0.79184 0.79612 1.20314 1.21025 1.19521 1.22428 0.95414 0.99862 0.96937 0.90105 1.22878 0.93491 1.01836 1.02356 1.21641 1.04514 0.93176 0.92728 1.21190 0.98200 0.92894 0.99571 1.21797 0.96383 0.99697 0.88329 1.60136 1.52449 1.06420 1.12957 1.21927 0.96051 0.87705 1.01012 1.21176 0.98489 0.99044 0.92235 0.93128 0.95893 0.96196 0.93249 0.90894 0.88414 0.92936 0.91110 0.90096 0.96608 0.83048 0.88596 0.96402 0.90533 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.89 71.98 0.64 -5.20 16 2 C 0.07 3.37 2.22 -11.54 -0.03 3.35 16 3 H 0.01 0.79 5.32 -2.39 -0.01 0.78 16 4 C -0.52 -29.00 8.35 25.60 0.21 -28.79 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -53.85 11.38 21.45 0.24 -53.61 16 8 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 C -0.13 -5.37 4.70 -10.86 -0.05 -5.42 16 13 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 14 C -0.17 -6.36 9.49 30.55 0.29 -6.07 16 15 C -0.12 -4.20 2.02 -52.17 -0.11 -4.31 16 16 C -0.08 -2.84 5.49 30.76 0.17 -2.68 16 17 C 0.07 2.08 6.55 86.41 0.57 2.65 16 18 N -0.69 -17.65 6.77 -513.35 -3.48 -21.12 16 19 C 0.06 1.58 6.55 86.41 0.57 2.14 16 20 C -0.07 -1.99 5.87 30.76 0.18 -1.81 16 21 H 0.05 2.78 6.23 -2.39 -0.01 2.76 16 22 H 0.02 1.00 7.25 -2.39 -0.02 0.99 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.05 2.18 5.63 -2.38 -0.01 2.17 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.02 0.56 7.23 -2.39 -0.02 0.54 16 31 H 0.35 7.26 8.90 -89.69 -0.80 6.46 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.02 0.50 8.12 -2.39 -0.02 0.49 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 Total: -1.00 -60.27 272.38 1.95 -58.33 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.26 Total: 14.98 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 2.89 Total: -45.12 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -3.23 Total: -74.73 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -60.27 1.95 -58.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.739 kcal (2) G-P(sol) polarization free energy of solvation -60.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds