Wall clock time and date at job start Mon Mar 30 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47229 * 2 1 4 4 C 1.50697 * 109.46726 * 119.99815 * 2 1 3 5 5 H 1.08005 * 119.99649 * 114.57567 * 4 2 1 6 6 C 1.37879 * 120.00271 * 294.57028 * 4 2 1 7 7 N 1.31509 * 119.99750 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46878 * 90.00033 * 8 6 4 10 10 H 1.48495 * 109.47011 * 209.99851 * 8 6 4 11 11 H 1.48500 * 109.47010 * 329.99873 * 8 6 4 12 12 C 1.52998 * 109.46991 * 239.99685 * 2 1 3 13 13 H 1.08996 * 115.55930 * 279.55511 * 12 2 1 14 14 C 1.53041 * 117.50452 * 65.26245 * 12 2 1 15 15 C 1.52734 * 59.94661 * 107.46615 * 14 12 2 16 16 C 1.53220 * 117.84543 * 107.73917 * 15 14 12 17 17 C 1.53261 * 108.62011 * 197.00400 * 16 15 14 18 18 N 1.46809 * 109.44633 * 304.40967 * 17 16 15 19 19 C 1.46811 * 111.57599 * 64.82710 * 18 17 16 20 20 C 1.53220 * 117.84416 * 252.25842 * 15 14 12 21 21 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47306 * 300.00195 * 1 2 3 23 23 H 1.08996 * 109.46865 * 60.00413 * 1 2 3 24 24 H 0.97000 * 119.99828 * 179.97438 * 7 6 4 25 25 H 1.09006 * 117.50035 * 214.94014 * 14 12 2 26 26 H 1.09000 * 117.50278 * 359.97438 * 14 12 2 27 27 H 1.09001 * 109.61065 * 316.74848 * 16 15 14 28 28 H 1.09001 * 109.60984 * 77.26368 * 16 15 14 29 29 H 1.09001 * 109.47340 * 184.41527 * 17 16 15 30 30 H 1.09000 * 109.48128 * 64.40643 * 17 16 15 31 31 H 1.00900 * 110.99912 * 300.45086 * 18 17 16 32 32 H 1.08997 * 109.47297 * 175.17905 * 19 18 17 33 33 H 1.08997 * 109.47727 * 55.16516 * 19 18 17 34 34 H 1.09004 * 109.61320 * 282.73366 * 20 15 14 35 35 H 1.09002 * 109.60787 * 43.25232 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5790 -1.6368 1.1338 6 6 1.7940 -0.1777 2.4797 7 7 1.1279 0.9502 2.5973 8 14 2.4172 -1.0579 4.0049 9 1 3.7825 -0.5743 4.3323 10 1 1.5067 -0.7787 5.1443 11 1 2.4577 -2.5204 3.7505 12 6 2.0400 -0.7213 -1.2492 13 1 2.0429 -1.8099 -1.1954 14 6 1.7401 -0.0815 -2.6067 15 6 3.1594 -0.0507 -2.0435 16 6 4.2095 -0.9532 -2.6996 17 6 5.4016 -1.0901 -1.7462 18 7 5.9088 0.2442 -1.4030 19 6 4.9188 1.0196 -0.6453 20 6 3.6965 1.2891 -1.5295 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.9599 1.3248 3.4762 25 1 1.5460 -0.7494 -3.4460 26 1 1.1790 0.8530 -2.6098 27 1 3.7790 -1.9362 -2.8908 28 1 4.5405 -0.5073 -3.6376 29 1 6.1905 -1.6652 -2.2310 30 1 5.0839 -1.6027 -0.8382 31 1 6.2030 0.7427 -2.2294 32 1 5.3594 1.9672 -0.3355 33 1 4.6127 0.4558 0.2359 34 1 3.9863 1.9151 -2.3735 35 1 2.9259 1.7921 -0.9452 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:39 Heat of formation + Delta-G solvation = 5.450998 kcal Electronic energy + Delta-G solvation = -14608.944432 eV Core-core repulsion = 12413.605269 eV Total energy + Delta-G solvation = -2195.339163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19766 -35.58315 -33.17615 -30.64633 -29.95752 -27.47047 -25.10029 -22.80428 -22.41055 -21.56362 -19.39351 -17.87127 -16.34764 -15.31228 -14.67575 -14.16244 -14.03392 -13.85463 -13.47047 -12.68865 -12.47586 -11.93536 -11.79015 -11.50030 -11.18030 -10.95330 -10.86278 -10.77193 -10.59239 -10.33026 -10.08866 -9.99919 -9.63870 -9.00081 -8.86762 -8.50258 -8.26922 -7.83311 -5.95695 -3.98747 3.33544 3.40330 3.43427 4.43985 4.51247 4.74279 5.19110 5.36646 5.42074 5.52632 5.57815 5.70867 5.83327 5.96116 6.03651 6.16331 6.25810 6.31638 6.43836 6.47670 6.56732 6.72730 6.83014 6.88101 6.88825 6.98095 7.26648 7.42280 7.47577 7.77593 7.80294 8.04809 8.11406 8.51182 9.04304 9.64900 11.12155 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029648 B = 0.011917 C = 0.009934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.176895 B = 2348.927029 C = 2818.053422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.065 3.935 3 H 0.040 0.960 4 C -0.502 4.502 5 H 0.052 0.948 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.099 4.099 13 H 0.085 0.915 14 C -0.191 4.191 15 C -0.130 4.130 16 C -0.114 4.114 17 C 0.062 3.938 18 N -0.688 5.688 19 C 0.060 3.940 20 C -0.115 4.115 21 H 0.024 0.976 22 H 0.071 0.929 23 H 0.008 0.992 24 H 0.259 0.741 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.329 0.671 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -0.913 -8.473 9.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.047 3.953 3 H 0.058 0.942 4 C -0.540 4.540 5 H 0.070 0.930 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.117 4.117 13 H 0.103 0.897 14 C -0.228 4.228 15 C -0.130 4.130 16 C -0.153 4.153 17 C -0.068 4.068 18 N -0.315 5.315 19 C -0.070 4.070 20 C -0.154 4.154 21 H 0.043 0.957 22 H 0.090 0.910 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.174 -1.016 -7.746 9.370 hybrid contribution -0.493 -0.273 0.057 0.567 sum 4.681 -1.289 -7.689 9.094 Atomic orbital electron populations 1.21717 0.99035 0.98683 0.99344 1.18432 0.91834 0.95860 0.89186 0.94192 1.21097 1.34489 1.07911 0.90534 0.92980 1.24926 0.95263 0.94951 0.98778 1.69915 1.40712 1.19133 1.23372 0.86694 0.78720 0.80125 0.83079 1.20681 1.21404 1.20046 1.22727 0.98413 0.98169 0.92411 0.89712 1.23001 0.98279 1.02885 0.98621 1.21359 0.89221 0.97792 1.04678 1.21802 0.96742 0.98805 0.97935 1.21976 0.94494 0.91350 0.98966 1.60558 1.40217 1.04199 1.26524 1.22037 0.89680 0.97762 0.97474 1.21821 0.99821 0.94972 0.98790 0.95690 0.91038 0.97341 0.93158 0.90531 0.89658 0.92041 0.92780 0.91745 0.90403 0.85434 0.91680 0.88965 0.93497 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.91 37.16 0.33 -2.80 16 2 C 0.06 1.58 2.12 -91.77 -0.19 1.38 16 3 H 0.04 1.05 5.31 -51.93 -0.28 0.77 16 4 C -0.50 -13.49 8.49 -34.44 -0.29 -13.78 16 5 H 0.05 1.41 7.75 -52.48 -0.41 1.00 16 6 C 0.06 1.69 5.33 -17.82 -0.09 1.59 16 7 N -0.89 -25.35 11.73 55.43 0.65 -24.70 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.10 -2.05 4.71 -90.72 -0.43 -2.47 16 13 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 14 C -0.19 -3.42 9.29 -26.85 -0.25 -3.67 16 15 C -0.13 -2.32 2.02 -154.54 -0.31 -2.63 16 16 C -0.11 -1.74 5.83 -26.48 -0.15 -1.89 16 17 C 0.06 0.95 6.56 -3.74 -0.02 0.92 16 18 N -0.69 -10.71 6.82 -113.62 -0.77 -11.48 16 19 C 0.06 1.05 6.56 -3.74 -0.02 1.03 16 20 C -0.12 -2.05 5.45 -26.48 -0.14 -2.19 16 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.89 6.51 -51.93 -0.34 1.55 16 23 H 0.01 0.17 7.66 -51.93 -0.40 -0.23 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 27 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 31 H 0.33 4.47 8.81 -39.29 -0.35 4.13 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.95 8.12 -51.93 -0.42 1.53 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.70 5.63 -51.93 -0.29 1.41 16 LS Contribution 273.91 15.07 4.13 4.13 Total: -1.00 -27.36 273.91 -8.43 -35.79 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.83 Total: 4.45 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -1.59 Total: -24.51 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.12 Total: -36.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.36 -8.43 -35.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.239 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds