Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47222 * 239.99496 * 2 1 3 5 5 H 1.07997 * 119.99750 * 240.00244 * 4 2 1 6 6 C 1.37876 * 119.99656 * 59.99832 * 4 2 1 7 7 N 1.31509 * 120.00552 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99588 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47300 * 89.99993 * 8 6 4 10 10 H 1.48500 * 109.46882 * 210.00641 * 8 6 4 11 11 H 1.48501 * 109.47042 * 330.00091 * 8 6 4 12 12 C 1.53009 * 109.46968 * 119.99462 * 2 1 3 13 13 H 1.09003 * 115.56776 * 34.27888 * 12 2 1 14 14 C 1.53051 * 117.50388 * 248.56351 * 12 2 1 15 15 C 1.52729 * 117.50428 * 180.02562 * 12 2 1 16 16 C 1.53220 * 117.84441 * 359.73309 * 15 12 2 17 17 C 1.53253 * 108.62473 * 162.99178 * 16 15 12 18 18 N 1.46812 * 109.44615 * 55.59573 * 17 16 15 19 19 C 1.46813 * 111.57097 * 295.17610 * 18 17 16 20 20 C 1.53206 * 117.84660 * 215.22448 * 15 12 2 21 21 H 1.09000 * 109.47164 * 60.00462 * 1 2 3 22 22 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46936 * 300.00279 * 1 2 3 24 24 H 0.96997 * 120.00332 * 179.97438 * 7 6 4 25 25 H 1.08994 * 117.50888 * 145.06044 * 14 12 2 26 26 H 1.08999 * 117.53628 * 359.97438 * 14 12 2 27 27 H 1.09000 * 109.61233 * 43.24606 * 16 15 12 28 28 H 1.09003 * 109.61156 * 282.73277 * 16 15 12 29 29 H 1.09009 * 109.47471 * 295.60899 * 17 16 15 30 30 H 1.08993 * 109.48379 * 175.59060 * 17 16 15 31 31 H 1.00901 * 110.99776 * 59.54146 * 18 17 16 32 32 H 1.08993 * 109.47654 * 184.81946 * 19 18 17 33 33 H 1.09002 * 109.47641 * 304.83660 * 19 18 17 34 34 H 1.09000 * 109.61362 * 316.74104 * 20 15 12 35 35 H 1.08994 * 109.61832 * 77.26894 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6992 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3214 -1.1207 -4.0078 9 1 1.3429 -2.1621 -4.4116 10 1 2.4867 -0.1418 -5.1122 11 1 3.6293 -1.7586 -3.7120 12 6 2.0400 -0.7212 1.2494 13 1 1.4308 -1.5579 1.5912 14 6 2.7434 0.1227 2.3150 15 6 3.5523 -0.8274 1.4346 16 6 4.4503 -0.2117 0.3565 17 6 5.8625 -0.0502 0.9294 18 7 6.3425 -1.3481 1.4197 19 6 5.5392 -1.8285 2.5508 20 6 4.1066 -2.1017 2.0795 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7095 1.1615 -3.4844 25 1 2.5970 -0.1589 3.3577 26 1 2.8434 1.1916 2.1263 27 1 4.0589 0.7637 0.0675 28 1 4.4811 -0.8685 -0.5129 29 1 5.8412 0.6639 1.7528 30 1 6.5317 0.3138 0.1499 31 1 6.3641 -2.0299 0.6762 32 1 5.9750 -2.7480 2.9414 33 1 5.5257 -1.0711 3.3346 34 1 3.4875 -2.3791 2.9327 35 1 4.1099 -2.9102 1.3485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = 4.035552 kcal Electronic energy + Delta-G solvation = -14533.935147 eV Core-core repulsion = 12338.534605 eV Total energy + Delta-G solvation = -2195.400541 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.14637 -35.69721 -33.14439 -30.59404 -30.00526 -27.52276 -25.10656 -22.62873 -22.30644 -21.76984 -19.21174 -18.14603 -16.18633 -15.38639 -14.64371 -14.36101 -14.00917 -13.78030 -13.12472 -12.93226 -12.61184 -11.99867 -11.69312 -11.46693 -11.27310 -10.91082 -10.89189 -10.68701 -10.63269 -10.28682 -10.11447 -9.98113 -9.55432 -9.21473 -8.75436 -8.59484 -8.29921 -7.80441 -5.94638 -3.98744 3.30502 3.37879 3.39818 4.41877 4.58555 4.67485 5.20132 5.35269 5.36842 5.49798 5.61009 5.76197 5.81171 5.89508 6.00646 6.14888 6.21565 6.32364 6.39077 6.42881 6.68608 6.75090 6.88486 6.89436 6.96841 7.13753 7.29972 7.38425 7.43410 7.67129 7.76666 8.02450 8.17757 8.51179 9.03220 9.64039 11.11297 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.011412 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.138213 B = 2452.954661 C = 2986.236733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.072 3.928 3 H 0.026 0.974 4 C -0.495 4.495 5 H 0.055 0.945 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 C -0.108 4.108 13 H 0.081 0.919 14 C -0.189 4.189 15 C -0.117 4.117 16 C -0.102 4.102 17 C 0.055 3.945 18 N -0.690 5.690 19 C 0.063 3.937 20 C -0.117 4.117 21 H 0.082 0.918 22 H 0.023 0.977 23 H 0.006 0.994 24 H 0.258 0.742 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.338 0.662 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -3.055 7.282 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.053 3.947 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.127 4.127 13 H 0.099 0.901 14 C -0.226 4.226 15 C -0.117 4.117 16 C -0.141 4.141 17 C -0.075 4.075 18 N -0.319 5.319 19 C -0.067 4.067 20 C -0.156 4.156 21 H 0.100 0.900 22 H 0.042 0.958 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.510 -2.649 7.552 10.316 hybrid contribution -0.726 -0.748 -1.315 1.678 sum 5.784 -3.397 6.237 9.159 Atomic orbital electron populations 1.21783 0.98832 0.98767 0.99928 1.18306 0.92122 0.94891 0.89349 0.95635 1.21115 1.30194 1.11889 0.90092 0.92690 1.24948 0.95384 0.95075 0.98781 1.69882 1.37215 1.23080 1.23073 0.86704 0.79217 0.79461 0.83261 1.20908 1.21386 1.20010 1.22684 0.92292 0.99857 0.97828 0.90071 1.23104 1.07046 0.97198 0.95289 1.21214 0.94385 0.96528 0.99618 1.21736 0.93332 1.02257 0.96747 1.22121 0.95114 0.91119 0.99111 1.60615 1.53761 1.05696 1.11782 1.21964 0.90971 0.99720 0.94051 1.21835 0.97373 0.96694 0.99709 0.89981 0.95791 0.97532 0.93189 0.90702 0.89699 0.90702 0.90674 0.91748 0.91400 0.84528 0.91612 0.91434 0.92258 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.95 37.16 0.33 -2.98 16 2 C 0.07 1.76 1.82 -91.77 -0.17 1.59 16 3 H 0.03 0.69 7.35 -51.93 -0.38 0.30 16 4 C -0.49 -13.06 6.70 -34.44 -0.23 -13.29 16 5 H 0.05 1.46 6.76 -52.49 -0.35 1.10 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C -0.11 -2.25 4.84 -90.73 -0.44 -2.69 16 13 H 0.08 1.67 8.11 -51.93 -0.42 1.25 16 14 C -0.19 -3.42 9.56 -26.85 -0.26 -3.68 16 15 C -0.12 -2.13 1.84 -154.57 -0.28 -2.42 16 16 C -0.10 -1.91 4.18 -26.49 -0.11 -2.02 16 17 C 0.05 0.85 6.56 -3.74 -0.02 0.83 16 18 N -0.69 -10.04 6.82 -113.61 -0.77 -10.81 16 19 C 0.06 0.86 6.56 -3.73 -0.02 0.84 16 20 C -0.12 -1.82 5.83 -26.48 -0.15 -1.97 16 21 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 22 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 1.57 8.05 -51.93 -0.42 1.15 16 27 H 0.07 1.57 7.13 -51.93 -0.37 1.20 16 28 H 0.07 1.55 6.79 -51.93 -0.35 1.20 16 29 H 0.06 0.99 8.12 -51.92 -0.42 0.57 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.34 4.75 8.81 -39.29 -0.35 4.40 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 34 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 271.71 15.07 4.09 4.09 Total: -1.00 -27.22 271.71 -8.42 -35.64 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.89 Total: 3.98 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -1.45 Total: -24.29 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.15 Total: -35.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.22 -8.42 -35.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.677 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds