Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47222 * 239.99496 * 2 1 3 5 5 H 1.07997 * 119.99750 * 240.00244 * 4 2 1 6 6 C 1.37876 * 119.99656 * 59.99832 * 4 2 1 7 7 N 1.31509 * 120.00552 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99588 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47300 * 89.99993 * 8 6 4 10 10 H 1.48500 * 109.46882 * 210.00641 * 8 6 4 11 11 H 1.48501 * 109.47042 * 330.00091 * 8 6 4 12 12 C 1.53009 * 109.46968 * 119.99462 * 2 1 3 13 13 H 1.09003 * 115.56776 * 34.27888 * 12 2 1 14 14 C 1.53051 * 117.50388 * 248.56351 * 12 2 1 15 15 C 1.52729 * 117.50428 * 180.02562 * 12 2 1 16 16 C 1.53220 * 117.84441 * 359.73309 * 15 12 2 17 17 C 1.53253 * 108.62473 * 162.99178 * 16 15 12 18 18 N 1.46812 * 109.44615 * 55.59573 * 17 16 15 19 19 C 1.46813 * 111.57097 * 295.17610 * 18 17 16 20 20 C 1.53206 * 117.84660 * 215.22448 * 15 12 2 21 21 H 1.09000 * 109.47164 * 60.00462 * 1 2 3 22 22 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46936 * 300.00279 * 1 2 3 24 24 H 0.96997 * 120.00332 * 179.97438 * 7 6 4 25 25 H 1.08994 * 117.50888 * 145.06044 * 14 12 2 26 26 H 1.08999 * 117.53628 * 359.97438 * 14 12 2 27 27 H 1.09000 * 109.61233 * 43.24606 * 16 15 12 28 28 H 1.09003 * 109.61156 * 282.73277 * 16 15 12 29 29 H 1.09009 * 109.47471 * 295.60899 * 17 16 15 30 30 H 1.08993 * 109.48379 * 175.59060 * 17 16 15 31 31 H 1.00901 * 110.99776 * 59.54146 * 18 17 16 32 32 H 1.08993 * 109.47654 * 184.81946 * 19 18 17 33 33 H 1.09002 * 109.47641 * 304.83660 * 19 18 17 34 34 H 1.09000 * 109.61362 * 316.74104 * 20 15 12 35 35 H 1.08994 * 109.61832 * 77.26894 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6992 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3214 -1.1207 -4.0078 9 1 1.3429 -2.1621 -4.4116 10 1 2.4867 -0.1418 -5.1122 11 1 3.6293 -1.7586 -3.7120 12 6 2.0400 -0.7212 1.2494 13 1 1.4308 -1.5579 1.5912 14 6 2.7434 0.1227 2.3150 15 6 3.5523 -0.8274 1.4346 16 6 4.4503 -0.2117 0.3565 17 6 5.8625 -0.0502 0.9294 18 7 6.3425 -1.3481 1.4197 19 6 5.5392 -1.8285 2.5508 20 6 4.1066 -2.1017 2.0795 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7095 1.1615 -3.4844 25 1 2.5970 -0.1589 3.3577 26 1 2.8434 1.1916 2.1263 27 1 4.0589 0.7637 0.0675 28 1 4.4811 -0.8685 -0.5129 29 1 5.8412 0.6639 1.7528 30 1 6.5317 0.3138 0.1499 31 1 6.3641 -2.0299 0.6762 32 1 5.9750 -2.7480 2.9414 33 1 5.5257 -1.0711 3.3346 34 1 3.4875 -2.3791 2.9327 35 1 4.1099 -2.9102 1.3485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -11.992542 kcal Electronic energy + Delta-G solvation = -14534.630177 eV Core-core repulsion = 12338.534605 eV Total energy + Delta-G solvation = -2196.095572 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58656 -37.18213 -35.03576 -32.13538 -31.68342 -28.95838 -27.16066 -24.11132 -23.77949 -23.20489 -20.86871 -19.62199 -18.25566 -16.79879 -16.51001 -15.68642 -15.36947 -15.25327 -14.69797 -14.55069 -14.29120 -13.45562 -13.38092 -13.02828 -12.88081 -12.80177 -12.64082 -12.31280 -12.17710 -12.01320 -11.93500 -11.48225 -11.25821 -10.97019 -10.44970 -10.36206 -10.26975 -9.11015 -8.04003 -6.13744 1.38941 1.40774 1.49214 2.43646 3.07390 3.23451 3.47802 3.83881 4.06284 4.14426 4.23299 4.35281 4.53528 4.60113 4.68906 4.78163 4.88942 4.94094 4.97991 4.99475 5.05123 5.11399 5.16927 5.30916 5.40751 5.46997 5.50315 5.65119 5.68084 6.00996 6.14244 6.16943 6.44512 6.52688 6.94734 7.51732 9.00968 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.011412 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.138213 B = 2452.954661 C = 2986.236733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 H -0.007 1.007 4 C -0.495 4.495 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.267 1.267 12 C -0.136 4.136 13 H 0.085 0.915 14 C -0.170 4.170 15 C -0.111 4.111 16 C -0.097 4.097 17 C 0.066 3.934 18 N -0.687 5.687 19 C 0.067 3.933 20 C -0.112 4.112 21 H 0.053 0.947 22 H 0.025 0.975 23 H 0.024 0.976 24 H 0.257 0.743 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.341 0.659 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -4.327 8.588 12.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 H 0.011 0.989 4 C -0.533 4.533 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.192 1.192 12 C -0.154 4.154 13 H 0.103 0.897 14 C -0.207 4.207 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.064 4.064 18 N -0.315 5.315 19 C -0.063 4.063 20 C -0.151 4.151 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.859 -3.935 8.866 12.484 hybrid contribution -1.164 -0.328 -1.704 2.089 sum 6.695 -4.263 7.162 10.690 Atomic orbital electron populations 1.21661 0.98933 0.98620 0.99429 1.18172 0.92061 0.93358 0.90942 0.98908 1.21344 1.29487 1.11483 0.91009 0.93046 1.25664 0.95801 0.95818 1.01601 1.70018 1.38492 1.24453 1.23450 0.85779 0.78960 0.78359 0.79924 1.20601 1.21398 1.19151 1.22460 0.94442 1.00919 0.97559 0.89679 1.23106 1.05061 0.96494 0.96059 1.21350 0.92532 0.97891 0.99310 1.21624 0.95720 0.99858 0.96447 1.22006 0.92923 0.92130 0.99372 1.60639 1.53485 1.05261 1.12118 1.22031 0.89590 1.01044 0.93613 1.21848 0.98769 0.94657 0.99842 0.92769 0.95594 0.95685 0.93401 0.87822 0.90656 0.93983 0.93084 0.91159 0.90691 0.84114 0.89064 0.90947 0.90758 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.95 71.98 0.64 -5.74 16 2 C 0.07 3.66 1.82 -11.54 -0.02 3.64 16 3 H -0.01 -0.40 7.35 -2.39 -0.02 -0.42 16 4 C -0.49 -26.59 6.70 25.60 0.17 -26.42 16 5 H 0.05 2.75 6.76 -2.91 -0.02 2.73 16 6 C 0.01 0.46 5.30 84.66 0.45 0.91 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.66 16 8 Si 0.94 43.86 29.54 68.60 2.03 45.89 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C -0.14 -5.55 4.84 -10.86 -0.05 -5.60 16 13 H 0.09 3.40 8.11 -2.39 -0.02 3.38 16 14 C -0.17 -5.86 9.56 30.52 0.29 -5.57 16 15 C -0.11 -3.87 1.84 -52.22 -0.10 -3.97 16 16 C -0.10 -3.63 4.18 30.75 0.13 -3.50 16 17 C 0.07 1.93 6.56 86.40 0.57 2.50 16 18 N -0.69 -18.00 6.82 -513.36 -3.50 -21.50 16 19 C 0.07 1.59 6.56 86.41 0.57 2.15 16 20 C -0.11 -3.14 5.83 30.75 0.18 -2.96 16 21 H 0.05 2.99 6.07 -2.39 -0.01 2.97 16 22 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.07 2.74 8.05 -2.39 -0.02 2.72 16 27 H 0.04 1.81 7.13 -2.39 -0.02 1.79 16 28 H 0.05 2.12 6.79 -2.39 -0.02 2.10 16 29 H 0.07 2.01 8.12 -2.38 -0.02 2.00 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.34 8.71 8.81 -89.69 -0.79 7.92 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -58.59 271.71 1.86 -56.73 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.26 Total: 17.12 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 2.83 Total: -44.57 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -3.26 Total: -75.17 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -58.59 1.86 -56.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.733 kcal (2) G-P(sol) polarization free energy of solvation -58.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds