Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46805 * 110.99869 * 2 1 4 4 C 1.53263 * 109.44942 * 170.79911 * 3 2 1 5 5 C 1.53213 * 108.62600 * 55.57271 * 4 3 2 6 6 C 1.52737 * 117.84048 * 163.01607 * 5 4 3 7 7 C 1.52762 * 117.78718 * 94.01674 * 5 4 3 8 8 H 1.09002 * 117.50469 * 0.32034 * 7 5 4 9 9 C 1.52998 * 117.50626 * 215.29637 * 7 5 4 10 10 C 1.50706 * 109.47348 * 174.99734 * 9 7 5 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00436 * 179.72505 * 10 9 7 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.53223 * 114.75625 * 308.61051 * 5 4 3 19 19 C 1.46809 * 111.00437 * 235.29226 * 2 1 3 20 20 H 1.08998 * 109.47048 * 59.99860 * 1 2 3 21 21 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47010 * 299.99948 * 1 2 3 23 23 H 1.09002 * 109.47280 * 50.81238 * 3 2 1 24 24 H 1.08994 * 109.47950 * 290.79666 * 3 2 1 25 25 H 1.09005 * 109.61296 * 295.82847 * 4 3 2 26 26 H 1.09005 * 109.75519 * 175.40250 * 4 3 2 27 27 H 1.09001 * 117.50288 * 144.79465 * 6 5 4 28 28 H 1.08994 * 117.50839 * 359.73832 * 6 5 4 29 29 H 1.09001 * 109.47671 * 54.99942 * 9 7 5 30 30 H 1.08998 * 109.47454 * 294.99940 * 9 7 5 31 31 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.60969 * 171.12495 * 18 5 4 33 33 H 1.08999 * 109.60979 * 291.65164 * 18 5 4 34 34 H 1.09002 * 109.47239 * 309.19047 * 19 2 1 35 35 H 1.08996 * 109.47879 * 69.19327 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3706 0.0000 4 6 3.5098 1.3358 0.2311 5 6 4.1467 0.4368 -0.8336 6 6 5.6528 0.5548 -1.0587 7 6 4.6765 1.1016 -2.1028 8 1 4.5783 2.1842 -2.1826 9 6 4.5395 0.3280 -3.4157 10 6 5.0031 1.1931 -4.5593 11 1 5.3594 2.1946 -4.3687 12 6 4.9772 0.7042 -5.8482 13 7 4.5484 -0.5174 -6.0796 14 14 5.5526 1.7762 -7.2656 15 1 6.9726 2.1559 -7.0544 16 1 5.4263 1.0228 -8.5391 17 1 4.7166 3.0019 -7.3301 18 6 3.5100 -0.9505 -0.9665 19 6 1.9952 -0.7804 -1.1267 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5191 1.9425 0.7965 24 1 1.7847 1.8406 -0.9606 25 1 3.7195 0.9339 1.2224 26 1 3.9179 2.3434 0.1510 27 1 6.1975 -0.3561 -1.3073 28 1 6.1975 1.2777 -0.4515 29 1 3.4958 0.0529 -3.5682 30 1 5.1501 -0.5738 -3.3716 31 1 4.5305 -0.8616 -6.9863 32 1 3.9159 -1.4570 -1.8421 33 1 3.7196 -1.5365 -0.0716 34 1 1.5192 -1.7608 -1.1434 35 1 1.7847 -0.2584 -2.0601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260109508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = 8.944470 kcal Electronic energy + Delta-G solvation = -14172.649432 eV Core-core repulsion = 11977.461757 eV Total energy + Delta-G solvation = -2195.187675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19662 -36.17208 -32.84556 -30.73298 -30.20455 -27.95689 -24.91583 -23.37492 -22.81371 -21.09508 -19.97407 -17.62751 -16.35885 -15.30406 -14.84787 -14.60492 -14.45690 -13.92467 -13.27852 -13.08890 -12.41531 -12.18142 -12.11450 -11.74694 -11.64373 -11.21698 -11.02412 -10.87956 -10.78709 -10.58019 -10.49846 -10.01850 -9.63534 -9.18106 -8.93085 -8.59012 -8.24764 -8.02771 -5.98441 -3.99895 3.33932 3.38150 3.40804 4.17835 4.45259 4.55866 5.12548 5.20710 5.35961 5.40044 5.51776 5.54263 5.64712 5.74323 5.84716 5.88484 5.93154 5.99758 6.08434 6.19730 6.33641 6.35413 6.40592 6.57148 6.70562 6.81370 6.89850 7.16699 7.33125 7.36064 7.70623 7.81665 8.00912 8.46307 9.05646 9.63334 11.12636 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039626 B = 0.007921 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.434465 B = 3534.262638 C = 3769.236381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.060 3.940 4 C -0.072 4.072 5 C -0.142 4.142 6 C -0.178 4.178 7 C -0.110 4.110 8 H 0.087 0.913 9 C 0.052 3.948 10 C -0.516 4.516 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.074 4.074 19 C 0.060 3.940 20 H 0.023 0.977 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 1.157 11.276 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.067 4.067 4 C -0.110 4.110 5 C -0.142 4.142 6 C -0.215 4.215 7 C -0.128 4.128 8 H 0.105 0.895 9 C 0.015 3.985 10 C -0.554 4.554 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.111 4.111 19 C -0.068 4.068 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.828 0.803 11.552 12.546 hybrid contribution 0.078 0.966 -1.604 1.874 sum -4.750 1.768 9.948 11.165 Atomic orbital electron populations 1.22319 0.88060 1.01664 1.00207 1.61795 1.06831 1.13829 1.44612 1.22040 0.95742 0.88945 1.00019 1.21111 0.93639 0.98290 0.97953 1.21512 0.95362 0.97301 1.00026 1.23003 0.91303 1.02817 1.04395 1.22824 0.99855 0.98880 0.91271 0.89485 1.18719 0.96939 0.94534 0.88286 1.21231 1.42466 1.00103 0.91638 0.92803 1.25006 0.95532 0.95051 0.98873 1.69949 1.47320 1.15542 1.20784 0.86672 0.79311 0.80490 0.81623 1.20253 1.21300 1.20321 1.21109 0.93418 0.94862 1.01733 1.22086 0.95929 0.97211 0.91537 0.95842 0.91689 0.91869 0.91562 0.94546 0.91715 0.91948 0.89438 0.90322 0.96160 0.96351 0.92994 0.90375 0.92095 0.91400 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.57 60.06 0.57 0.90 16 2 N -0.55 -8.17 4.84 -242.74 -1.17 -9.35 16 3 C 0.06 0.89 5.49 -3.74 -0.02 0.87 16 4 C -0.07 -1.10 5.87 -26.48 -0.16 -1.26 16 5 C -0.14 -2.53 2.02 -154.54 -0.31 -2.84 16 6 C -0.18 -3.29 9.65 -26.84 -0.26 -3.55 16 7 C -0.11 -2.34 5.39 -90.72 -0.49 -2.83 16 8 H 0.09 1.87 8.00 -51.93 -0.42 1.46 16 9 C 0.05 1.35 3.85 -27.88 -0.11 1.24 16 10 C -0.52 -14.75 9.08 -34.44 -0.31 -15.07 16 11 H 0.05 1.50 7.68 -52.49 -0.40 1.10 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.07 -1.29 5.45 -26.48 -0.14 -1.43 16 19 C 0.06 0.99 5.49 -3.74 -0.02 0.97 16 20 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 22 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 23 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 24 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.90 8.08 -51.93 -0.42 0.49 16 27 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.02 0.56 7.65 -51.93 -0.40 0.16 16 30 H 0.02 0.50 7.49 -51.93 -0.39 0.12 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.08 1.51 6.60 -51.93 -0.34 1.17 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 35 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 LS Contribution 278.84 15.07 4.20 4.20 Total: -1.00 -29.66 278.84 -8.71 -38.36 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.11 Total: -2.34 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -1.34 Total: -21.48 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.44 Total: -35.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.66 -8.71 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.309 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds