Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46805 * 110.99869 * 2 1 4 4 C 1.53263 * 109.44942 * 170.79911 * 3 2 1 5 5 C 1.53213 * 108.62600 * 55.57271 * 4 3 2 6 6 C 1.52737 * 117.84048 * 163.01607 * 5 4 3 7 7 C 1.52762 * 117.78718 * 94.01674 * 5 4 3 8 8 H 1.09002 * 117.50469 * 0.32034 * 7 5 4 9 9 C 1.52998 * 117.50626 * 215.29637 * 7 5 4 10 10 C 1.50706 * 109.47348 * 174.99734 * 9 7 5 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00436 * 179.72505 * 10 9 7 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.53223 * 114.75625 * 308.61051 * 5 4 3 19 19 C 1.46809 * 111.00437 * 235.29226 * 2 1 3 20 20 H 1.08998 * 109.47048 * 59.99860 * 1 2 3 21 21 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47010 * 299.99948 * 1 2 3 23 23 H 1.09002 * 109.47280 * 50.81238 * 3 2 1 24 24 H 1.08994 * 109.47950 * 290.79666 * 3 2 1 25 25 H 1.09005 * 109.61296 * 295.82847 * 4 3 2 26 26 H 1.09005 * 109.75519 * 175.40250 * 4 3 2 27 27 H 1.09001 * 117.50288 * 144.79465 * 6 5 4 28 28 H 1.08994 * 117.50839 * 359.73832 * 6 5 4 29 29 H 1.09001 * 109.47671 * 54.99942 * 9 7 5 30 30 H 1.08998 * 109.47454 * 294.99940 * 9 7 5 31 31 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.60969 * 171.12495 * 18 5 4 33 33 H 1.08999 * 109.60979 * 291.65164 * 18 5 4 34 34 H 1.09002 * 109.47239 * 309.19047 * 19 2 1 35 35 H 1.08996 * 109.47879 * 69.19327 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3706 0.0000 4 6 3.5098 1.3358 0.2311 5 6 4.1467 0.4368 -0.8336 6 6 5.6528 0.5548 -1.0587 7 6 4.6765 1.1016 -2.1028 8 1 4.5783 2.1842 -2.1826 9 6 4.5395 0.3280 -3.4157 10 6 5.0031 1.1931 -4.5593 11 1 5.3594 2.1946 -4.3687 12 6 4.9772 0.7042 -5.8482 13 7 4.5484 -0.5174 -6.0796 14 14 5.5526 1.7762 -7.2656 15 1 6.9726 2.1559 -7.0544 16 1 5.4263 1.0228 -8.5391 17 1 4.7166 3.0019 -7.3301 18 6 3.5100 -0.9505 -0.9665 19 6 1.9952 -0.7804 -1.1267 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5191 1.9425 0.7965 24 1 1.7847 1.8406 -0.9606 25 1 3.7195 0.9339 1.2224 26 1 3.9179 2.3434 0.1510 27 1 6.1975 -0.3561 -1.3073 28 1 6.1975 1.2777 -0.4515 29 1 3.4958 0.0529 -3.5682 30 1 5.1501 -0.5738 -3.3716 31 1 4.5305 -0.8616 -6.9863 32 1 3.9159 -1.4570 -1.8421 33 1 3.7196 -1.5365 -0.0716 34 1 1.5192 -1.7608 -1.1434 35 1 1.7847 -0.2584 -2.0601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260109508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -8.925071 kcal Electronic energy + Delta-G solvation = -14173.424313 eV Core-core repulsion = 11977.461757 eV Total energy + Delta-G solvation = -2195.962556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60309 -37.56243 -34.99173 -32.07814 -31.66102 -29.84171 -26.17136 -25.30645 -24.19963 -22.39339 -21.64353 -19.18101 -18.46448 -16.65590 -16.58480 -16.06639 -15.77959 -15.42022 -14.66955 -14.57668 -14.14786 -13.93810 -13.43503 -13.28724 -13.03680 -12.84232 -12.73192 -12.48321 -12.33121 -12.17533 -12.06429 -11.58280 -11.45659 -11.10432 -10.75214 -10.34999 -10.12684 -9.27546 -8.20712 -6.31543 1.37155 1.40402 1.48335 2.38996 2.92214 3.07111 3.14131 3.77894 3.91644 4.07917 4.12600 4.26939 4.33310 4.49017 4.61712 4.67054 4.72731 4.74352 4.83843 4.91117 4.97370 5.00952 5.05516 5.09960 5.17723 5.31745 5.36144 5.48302 5.55591 5.68760 5.83014 6.10742 6.18378 6.27110 6.83801 7.36923 8.90394 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039626 B = 0.007921 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.434465 B = 3534.262638 C = 3769.236381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.069 4.069 5 C -0.123 4.123 6 C -0.165 4.165 7 C -0.141 4.141 8 H 0.084 0.916 9 C 0.067 3.933 10 C -0.542 4.542 11 H 0.056 0.944 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.963 3.037 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.075 4.075 19 C 0.065 3.935 20 H 0.015 0.985 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.014 0.986 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.107 0.893 29 H -0.011 1.011 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 2.257 12.785 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.202 4.202 7 C -0.159 4.159 8 H 0.102 0.898 9 C 0.030 3.970 10 C -0.579 4.579 11 H 0.074 0.926 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.113 4.113 19 C -0.063 4.063 20 H 0.034 0.966 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.115 0.885 24 H 0.032 0.968 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -4.909 1.910 13.077 14.098 hybrid contribution 0.070 0.578 -2.058 2.138 sum -4.839 2.488 11.020 12.290 Atomic orbital electron populations 1.22433 0.86280 1.02727 1.00960 1.61851 1.08467 1.13721 1.42945 1.22113 0.95792 0.89017 0.99976 1.21162 0.93678 0.98257 0.97505 1.21654 0.95162 0.97344 0.98144 1.23056 0.91886 1.02649 1.02610 1.22500 1.04565 0.98200 0.90632 0.89783 1.18419 0.94160 0.93691 0.90700 1.21684 1.42722 1.00598 0.92944 0.92550 1.25960 0.95430 0.96444 1.01908 1.70089 1.48222 1.17376 1.21566 0.85530 0.79205 0.78683 0.77823 1.19160 1.20647 1.19297 1.21097 0.94092 0.94859 1.01215 1.21972 0.95533 0.97935 0.90834 0.96603 0.90608 0.89494 0.88485 0.96811 0.89724 0.90828 0.90332 0.87513 0.99277 0.99200 0.92790 0.93431 0.90049 0.90005 0.97435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.57 127.69 1.22 1.76 16 2 N -0.55 -15.29 4.84 -921.89 -4.46 -19.74 16 3 C 0.06 1.61 5.49 86.41 0.47 2.08 16 4 C -0.07 -1.91 5.87 30.75 0.18 -1.73 16 5 C -0.12 -4.30 2.02 -52.20 -0.11 -4.41 16 6 C -0.17 -5.96 9.65 30.52 0.29 -5.67 16 7 C -0.14 -6.11 5.39 -10.86 -0.06 -6.17 16 8 H 0.08 3.66 8.00 -2.39 -0.02 3.64 16 9 C 0.07 3.67 3.85 29.85 0.11 3.78 16 10 C -0.54 -31.91 9.08 25.60 0.23 -31.67 16 11 H 0.06 3.20 7.68 -2.91 -0.02 3.18 16 12 C 0.00 0.01 5.46 84.65 0.46 0.48 16 13 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 14 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 C -0.07 -2.63 5.45 30.76 0.17 -2.46 16 19 C 0.07 2.17 5.49 86.41 0.47 2.64 16 20 H 0.02 0.37 8.14 -2.39 -0.02 0.36 16 21 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 22 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 23 H 0.10 2.09 8.08 -2.39 -0.02 2.07 16 24 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 25 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.07 1.91 8.08 -2.38 -0.02 1.89 16 27 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 28 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 29 H -0.01 -0.65 7.65 -2.39 -0.02 -0.67 16 30 H -0.01 -0.61 7.49 -2.39 -0.02 -0.63 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.05 1.94 6.60 -2.39 -0.02 1.92 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 2.44 8.02 -2.39 -0.02 2.42 16 35 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 Total: -1.00 -65.28 278.84 2.34 -62.95 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.03 Total: 8.45 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.46 Total: -41.36 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -4.17 Total: -77.28 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.28 2.34 -62.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.020 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds