Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47097 * 2 1 4 4 C 1.50705 * 109.47168 * 239.99404 * 2 1 3 5 5 H 1.07993 * 120.00342 * 240.00518 * 4 2 1 6 6 C 1.37880 * 119.99617 * 59.99954 * 4 2 1 7 7 N 1.31514 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99873 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47053 * 60.00477 * 8 6 4 10 10 H 1.48500 * 109.47243 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47510 * 300.00474 * 8 6 4 12 12 C 1.53001 * 109.46756 * 119.99990 * 2 1 3 13 13 H 1.08995 * 115.57544 * 29.22940 * 12 2 1 14 14 C 1.53043 * 117.50319 * 174.95899 * 12 2 1 15 15 C 1.52765 * 59.99333 * 107.48308 * 14 12 2 16 16 C 1.53230 * 117.76560 * 107.67265 * 15 14 12 17 17 C 1.53332 * 108.51422 * 197.12732 * 16 15 14 18 18 C 1.53005 * 109.18973 * 305.72632 * 17 16 15 19 19 N 1.46788 * 109.89543 * 62.27132 * 18 17 16 20 20 C 1.47045 * 111.19545 * 295.18909 * 19 18 17 21 21 H 1.09004 * 109.47071 * 173.97495 * 1 2 3 22 22 H 1.09004 * 109.47138 * 293.97089 * 1 2 3 23 23 H 1.08993 * 109.47209 * 53.97379 * 1 2 3 24 24 H 0.96996 * 119.99885 * 180.02562 * 7 6 4 25 25 H 1.09004 * 117.50209 * 359.97438 * 14 12 2 26 26 H 1.09005 * 117.50531 * 214.97278 * 14 12 2 27 27 H 1.08999 * 109.63450 * 316.83021 * 16 15 14 28 28 H 1.09004 * 109.63075 * 77.42185 * 16 15 14 29 29 H 1.08992 * 109.52186 * 185.81228 * 17 16 15 30 30 H 1.09002 * 109.51534 * 65.63378 * 17 16 15 31 31 H 1.08994 * 109.39921 * 302.14782 * 18 17 16 32 32 H 1.08991 * 109.40318 * 182.39981 * 18 17 16 33 33 H 1.00900 * 111.00294 * 171.09160 * 19 18 17 34 34 H 1.08997 * 109.56457 * 298.24656 * 20 19 18 35 35 H 1.09004 * 109.66368 * 177.95056 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8279 -2.5201 -4.0080 10 1 1.8278 -0.4196 -5.2204 11 1 3.8075 -1.1193 -4.0077 12 6 2.0399 -0.7213 1.2493 13 1 1.3878 -1.5018 1.6411 14 6 3.5504 -0.9324 1.3764 15 6 2.8460 0.0973 2.2581 16 6 2.6741 -0.2338 3.7443 17 6 1.6008 0.6925 4.3284 18 6 1.9775 2.1462 4.0356 19 7 2.0137 2.3705 2.5854 20 6 3.0791 1.5796 1.9515 21 1 -0.3633 -1.0220 -0.1079 22 1 -0.3633 0.4175 0.9391 23 1 -0.3633 0.6044 -0.8311 24 1 0.7089 1.1611 -3.4844 25 1 4.1806 -0.5578 0.5698 26 1 3.8919 -1.8522 1.8513 27 1 2.3610 -1.2720 3.8544 28 1 3.6178 -0.0756 4.2663 29 1 1.5378 0.5427 5.4062 30 1 0.6372 0.4669 3.8715 31 1 2.9591 2.3582 4.4592 32 1 1.2392 2.8094 4.4861 33 1 2.1168 3.3516 2.3736 34 1 4.0467 1.8866 2.3483 35 1 3.0602 1.7366 0.8730 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = 10.697840 kcal Electronic energy + Delta-G solvation = -14474.115347 eV Core-core repulsion = 12279.003704 eV Total energy + Delta-G solvation = -2195.111643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00557 -35.42564 -33.09218 -31.45943 -29.81212 -26.94269 -24.90213 -23.57971 -22.12485 -21.07143 -19.45524 -17.52464 -16.26776 -15.71352 -14.63959 -14.37775 -13.85356 -13.83793 -13.27593 -12.83705 -12.42444 -12.37367 -11.84213 -11.37664 -11.02518 -10.86594 -10.76210 -10.65771 -10.55905 -10.22411 -10.05804 -9.84476 -9.41265 -8.99040 -8.69114 -8.30725 -8.15079 -7.93070 -5.85243 -3.89688 3.37861 3.42527 3.45224 4.37986 4.54047 4.91627 5.16619 5.25270 5.38815 5.44983 5.60179 5.70280 5.78189 5.89772 5.98489 6.10255 6.23253 6.28560 6.38441 6.44170 6.55910 6.67685 6.81257 7.01514 7.08502 7.19057 7.46183 7.47357 7.63035 7.80569 7.89343 8.21473 8.30892 8.63305 9.14483 9.73273 11.20410 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047155 B = 0.009033 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.644758 B = 3099.105101 C = 3276.097727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.069 3.931 3 H 0.040 0.960 4 C -0.505 4.505 5 H 0.053 0.947 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.279 1.279 12 C -0.094 4.094 13 H 0.079 0.921 14 C -0.171 4.171 15 C -0.140 4.140 16 C -0.078 4.078 17 C -0.113 4.113 18 C 0.063 3.937 19 N -0.679 5.679 20 C 0.096 3.904 21 H 0.019 0.981 22 H 0.010 0.990 23 H 0.074 0.926 24 H 0.257 0.743 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.017 0.983 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 1.349 10.984 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.058 0.942 4 C -0.544 4.544 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.205 1.205 12 C -0.112 4.112 13 H 0.097 0.903 14 C -0.208 4.208 15 C -0.140 4.140 16 C -0.116 4.116 17 C -0.151 4.151 18 C -0.067 4.067 19 N -0.310 5.310 20 C -0.032 4.032 21 H 0.038 0.962 22 H 0.029 0.971 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.035 0.965 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.393 1.010 10.713 11.024 hybrid contribution 1.143 -0.092 -0.603 1.296 sum 3.536 0.918 10.110 10.750 Atomic orbital electron populations 1.21684 0.98738 0.99056 0.98987 1.18373 0.92341 0.95561 0.88624 0.94202 1.21235 1.30521 1.12058 0.90549 0.92843 1.24956 0.95377 0.95093 0.98718 1.69911 1.37098 1.23025 1.23014 0.86767 0.79080 0.79850 0.82880 1.20489 1.21491 1.20516 1.22645 0.91681 0.99162 0.97710 0.90312 1.22905 0.98081 0.98425 1.01420 1.21453 1.08526 0.92255 0.91816 1.21124 0.97784 0.98714 0.93963 1.21549 1.00132 0.94472 0.98936 1.21801 0.98656 0.97207 0.89043 1.60153 1.49711 1.11802 1.09293 1.21549 0.90097 0.91154 1.00415 0.96160 0.97109 0.90689 0.93258 0.88754 0.90697 0.92298 0.92988 0.92546 0.90911 0.96219 0.91652 0.84537 0.96471 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.84 37.16 0.33 -2.88 16 2 C 0.07 1.74 2.33 -91.77 -0.21 1.52 16 3 H 0.04 1.08 5.27 -51.93 -0.27 0.80 16 4 C -0.51 -13.94 8.09 -34.44 -0.28 -14.21 16 5 H 0.05 1.47 7.46 -52.49 -0.39 1.07 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.87 11.39 55.43 0.63 -25.24 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C -0.09 -2.01 4.90 -90.65 -0.44 -2.45 16 13 H 0.08 1.68 8.07 -51.93 -0.42 1.26 16 14 C -0.17 -3.29 9.03 -26.83 -0.24 -3.54 16 15 C -0.14 -2.55 2.11 -154.49 -0.33 -2.88 16 16 C -0.08 -1.20 5.76 -26.44 -0.15 -1.36 16 17 C -0.11 -1.61 6.12 -26.56 -0.16 -1.77 16 18 C 0.06 0.87 6.44 -3.88 -0.03 0.85 16 19 N -0.68 -11.12 6.85 -113.67 -0.78 -11.90 16 20 C 0.10 1.72 5.81 -3.66 -0.02 1.70 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 2.07 6.26 -51.93 -0.32 1.75 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.09 1.94 8.01 -51.93 -0.42 1.52 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.34 4.86 8.90 -39.29 -0.35 4.51 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 1.95 5.82 -51.93 -0.30 1.65 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -28.67 273.27 -8.52 -37.19 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.84 Total: 2.65 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.63 Total: -23.47 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.15 Total: -37.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.67 -8.52 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.891 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds