Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46565 * 2 1 4 4 C 1.50698 * 109.46937 * 240.00093 * 2 1 3 5 5 H 1.08004 * 119.99560 * 240.00066 * 4 2 1 6 6 C 1.37870 * 120.00368 * 59.99774 * 4 2 1 7 7 N 1.31522 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00320 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47256 * 120.00061 * 8 6 4 11 11 H 1.48497 * 109.47270 * 240.00244 * 8 6 4 12 12 C 1.53001 * 109.47267 * 119.99498 * 2 1 3 13 13 H 1.09006 * 115.56536 * 34.29135 * 12 2 1 14 14 C 1.53037 * 117.50900 * 248.56989 * 12 2 1 15 15 C 1.52766 * 117.50377 * 179.97438 * 12 2 1 16 16 C 1.53239 * 117.77250 * 215.16343 * 15 12 2 17 17 C 1.53330 * 108.50546 * 197.15984 * 16 15 12 18 18 C 1.53001 * 109.19430 * 305.71574 * 17 16 15 19 19 N 1.46781 * 109.89467 * 62.27047 * 18 17 16 20 20 C 1.47050 * 111.19535 * 295.19426 * 19 18 17 21 21 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47263 * 300.00227 * 1 2 3 23 23 H 1.09002 * 109.47687 * 60.00047 * 1 2 3 24 24 H 0.96995 * 120.00009 * 179.97438 * 7 6 4 25 25 H 1.09004 * 117.50275 * 359.97438 * 14 12 2 26 26 H 1.08997 * 117.50870 * 145.05511 * 14 12 2 27 27 H 1.08995 * 109.63534 * 316.86993 * 16 15 12 28 28 H 1.09000 * 109.62786 * 77.46080 * 16 15 12 29 29 H 1.09003 * 109.51448 * 185.79838 * 17 16 15 30 30 H 1.08994 * 109.56454 * 65.65960 * 17 16 15 31 31 H 1.09003 * 109.40064 * 302.13692 * 18 17 16 32 32 H 1.09004 * 109.39975 * 182.40210 * 18 17 16 33 33 H 1.00899 * 111.00281 * 171.10294 * 19 18 17 34 34 H 1.09003 * 109.56582 * 298.25955 * 20 19 18 35 35 H 1.08999 * 109.56504 * 177.90821 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1471 -0.1858 -4.8160 12 6 2.0400 -0.7211 1.2493 13 1 1.4309 -1.5581 1.5910 14 6 2.7432 0.1226 2.3150 15 6 3.5527 -0.8284 1.4338 16 6 4.1046 -2.1033 2.0805 17 6 5.5367 -1.8282 2.5540 18 6 6.3615 -1.2973 1.3798 19 7 5.7993 -0.0257 0.9090 20 6 4.4499 -0.2135 0.3557 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7094 1.1617 -3.4844 25 1 2.8429 1.1915 2.1258 26 1 2.5968 -0.1591 3.3576 27 1 3.4839 -2.3799 2.9327 28 1 4.1095 -2.9119 1.3496 29 1 5.9819 -2.7520 2.9235 30 1 5.5210 -1.0867 3.3527 31 1 6.3441 -2.0238 0.5673 32 1 7.3910 -1.1409 1.7018 33 1 6.4091 0.4115 0.2344 34 1 4.4977 -0.8817 -0.5042 35 1 4.0438 0.7504 0.0489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = 6.206563 kcal Electronic energy + Delta-G solvation = -14521.838284 eV Core-core repulsion = 12326.531885 eV Total energy + Delta-G solvation = -2195.306399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.93967 -35.49324 -33.13837 -31.36125 -29.86274 -26.90593 -25.09825 -23.29941 -22.07997 -21.39785 -18.99876 -17.74411 -16.22737 -15.88667 -14.66094 -14.31132 -13.85039 -13.42531 -13.32012 -12.78001 -12.68697 -12.24515 -11.61422 -11.47177 -11.24867 -10.89143 -10.80308 -10.58848 -10.52693 -10.31085 -10.09100 -9.96158 -9.38210 -9.17606 -8.73430 -8.35206 -8.27633 -7.85208 -5.93904 -3.98130 3.29210 3.38058 3.40912 4.41899 4.53441 4.92983 5.21309 5.30613 5.35901 5.44239 5.72835 5.77963 5.82513 5.91595 6.07312 6.21824 6.28554 6.38485 6.43331 6.53852 6.62481 6.75298 6.81320 6.94128 7.00515 7.12803 7.34982 7.42951 7.57691 7.78682 7.86327 8.05101 8.20188 8.52726 9.04752 9.64883 11.11905 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.011474 C = 0.009410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.769399 B = 2439.700096 C = 2974.930432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 H 0.027 0.973 4 C -0.496 4.496 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C -0.110 4.110 13 H 0.083 0.917 14 C -0.179 4.179 15 C -0.112 4.112 16 C -0.081 4.081 17 C -0.111 4.111 18 C 0.060 3.940 19 N -0.695 5.695 20 C 0.108 3.892 21 H 0.023 0.977 22 H 0.006 0.994 23 H 0.081 0.919 24 H 0.258 0.742 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.335 0.665 34 H 0.044 0.956 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -3.369 6.962 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 H 0.045 0.955 4 C -0.534 4.534 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.129 4.129 13 H 0.101 0.899 14 C -0.216 4.216 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.149 4.149 18 C -0.070 4.070 19 N -0.326 5.326 20 C -0.020 4.020 21 H 0.042 0.958 22 H 0.025 0.975 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.062 0.938 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.581 -3.079 7.439 10.399 hybrid contribution 0.470 -0.936 -1.734 2.026 sum 7.051 -4.016 5.705 9.919 Atomic orbital electron populations 1.21772 0.98748 0.98780 0.99949 1.18331 0.92251 0.94955 0.89328 0.95505 1.21193 1.30168 1.11933 0.90152 0.92623 1.24948 0.95379 0.95083 0.98749 1.69900 1.37185 1.23075 1.22949 0.86669 0.78668 0.79742 0.83722 1.19967 1.21155 1.21204 1.22717 0.91993 1.00112 0.98107 0.89902 1.23053 1.06131 0.97302 0.95101 1.21191 0.93741 0.96594 0.99761 1.21158 0.95371 0.96294 0.99078 1.21544 0.95584 0.99782 0.98000 1.21790 0.97336 0.91021 0.96811 1.60399 1.04755 1.23711 1.43757 1.21494 0.85854 1.00994 0.93649 0.95772 0.97450 0.90019 0.93244 0.89568 0.90772 0.92505 0.92275 0.92567 0.91500 0.95776 0.91962 0.84811 0.93782 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.95 37.16 0.33 -2.96 16 2 C 0.07 1.72 1.81 -91.77 -0.17 1.55 16 3 H 0.03 0.72 7.33 -51.93 -0.38 0.34 16 4 C -0.50 -13.15 6.70 -34.44 -0.23 -13.38 16 5 H 0.06 1.49 6.77 -52.48 -0.36 1.13 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 C -0.11 -2.33 4.83 -90.72 -0.44 -2.76 16 13 H 0.08 1.71 8.11 -51.93 -0.42 1.29 16 14 C -0.18 -3.36 9.57 -26.79 -0.26 -3.62 16 15 C -0.11 -2.14 1.93 -154.51 -0.30 -2.44 16 16 C -0.08 -1.34 5.76 -26.44 -0.15 -1.49 16 17 C -0.11 -1.59 6.12 -26.56 -0.16 -1.75 16 18 C 0.06 0.88 6.44 -3.89 -0.03 0.85 16 19 N -0.70 -11.48 6.85 -113.66 -0.78 -12.26 16 20 C 0.11 2.12 4.67 -3.66 -0.02 2.11 16 21 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.09 1.68 8.05 -51.93 -0.42 1.26 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.34 4.94 8.90 -39.29 -0.35 4.59 16 34 H 0.04 0.95 6.87 -51.93 -0.36 0.59 16 35 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 LS Contribution 271.78 15.07 4.10 4.10 Total: -1.00 -27.56 271.78 -8.48 -36.05 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.90 Total: 3.03 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.51 Total: -22.39 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.15 Total: -36.94 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.56 -8.48 -36.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.255 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds