Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46565 * 2 1 4 4 C 1.50698 * 109.46937 * 240.00093 * 2 1 3 5 5 H 1.08004 * 119.99560 * 240.00066 * 4 2 1 6 6 C 1.37870 * 120.00368 * 59.99774 * 4 2 1 7 7 N 1.31522 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00320 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47256 * 120.00061 * 8 6 4 11 11 H 1.48497 * 109.47270 * 240.00244 * 8 6 4 12 12 C 1.53001 * 109.47267 * 119.99498 * 2 1 3 13 13 H 1.09006 * 115.56536 * 34.29135 * 12 2 1 14 14 C 1.53037 * 117.50900 * 248.56989 * 12 2 1 15 15 C 1.52766 * 117.50377 * 179.97438 * 12 2 1 16 16 C 1.53239 * 117.77250 * 215.16343 * 15 12 2 17 17 C 1.53330 * 108.50546 * 197.15984 * 16 15 12 18 18 C 1.53001 * 109.19430 * 305.71574 * 17 16 15 19 19 N 1.46781 * 109.89467 * 62.27047 * 18 17 16 20 20 C 1.47050 * 111.19535 * 295.19426 * 19 18 17 21 21 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47263 * 300.00227 * 1 2 3 23 23 H 1.09002 * 109.47687 * 60.00047 * 1 2 3 24 24 H 0.96995 * 120.00009 * 179.97438 * 7 6 4 25 25 H 1.09004 * 117.50275 * 359.97438 * 14 12 2 26 26 H 1.08997 * 117.50870 * 145.05511 * 14 12 2 27 27 H 1.08995 * 109.63534 * 316.86993 * 16 15 12 28 28 H 1.09000 * 109.62786 * 77.46080 * 16 15 12 29 29 H 1.09003 * 109.51448 * 185.79838 * 17 16 15 30 30 H 1.08994 * 109.56454 * 65.65960 * 17 16 15 31 31 H 1.09003 * 109.40064 * 302.13692 * 18 17 16 32 32 H 1.09004 * 109.39975 * 182.40210 * 18 17 16 33 33 H 1.00899 * 111.00281 * 171.10294 * 19 18 17 34 34 H 1.09003 * 109.56582 * 298.25955 * 20 19 18 35 35 H 1.08999 * 109.56504 * 177.90821 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1471 -0.1858 -4.8160 12 6 2.0400 -0.7211 1.2493 13 1 1.4309 -1.5581 1.5910 14 6 2.7432 0.1226 2.3150 15 6 3.5527 -0.8284 1.4338 16 6 4.1046 -2.1033 2.0805 17 6 5.5367 -1.8282 2.5540 18 6 6.3615 -1.2973 1.3798 19 7 5.7993 -0.0257 0.9090 20 6 4.4499 -0.2135 0.3557 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7094 1.1617 -3.4844 25 1 2.8429 1.1915 2.1258 26 1 2.5968 -0.1591 3.3576 27 1 3.4839 -2.3799 2.9327 28 1 4.1095 -2.9119 1.3496 29 1 5.9819 -2.7520 2.9235 30 1 5.5210 -1.0867 3.3527 31 1 6.3441 -2.0238 0.5673 32 1 7.3910 -1.1409 1.7018 33 1 6.4091 0.4115 0.2344 34 1 4.4977 -0.8817 -0.5042 35 1 4.0438 0.7504 0.0489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = -10.253509 kcal Electronic energy + Delta-G solvation = -14522.552046 eV Core-core repulsion = 12326.531885 eV Total energy + Delta-G solvation = -2196.020162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43682 -37.02797 -35.02552 -32.75885 -31.73525 -28.39322 -27.11126 -24.73806 -23.86275 -22.73319 -20.70059 -19.21804 -18.26313 -17.31096 -16.60970 -15.66065 -15.35338 -14.92379 -14.86258 -14.58865 -14.23611 -13.57732 -13.27331 -13.19488 -12.99460 -12.80462 -12.60977 -12.23600 -12.11411 -12.00073 -11.75487 -11.44073 -11.13287 -10.99292 -10.45134 -10.35096 -10.01857 -9.25540 -8.03576 -6.13399 1.36972 1.40211 1.49581 2.43463 3.03783 3.23688 3.54286 3.84461 4.03355 4.17365 4.27509 4.33688 4.47771 4.66379 4.79107 4.84617 4.87414 4.99464 5.01702 5.04821 5.09225 5.12810 5.14187 5.20805 5.43672 5.48448 5.52070 5.66269 5.67400 6.03301 6.14153 6.20647 6.45594 6.58609 6.95672 7.52174 9.01466 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.011474 C = 0.009410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.769399 B = 2439.700096 C = 2974.930432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.071 3.929 3 H -0.006 1.006 4 C -0.497 4.497 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.942 3.058 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.132 4.132 13 H 0.090 0.910 14 C -0.162 4.162 15 C -0.109 4.109 16 C -0.081 4.081 17 C -0.106 4.106 18 C 0.055 3.945 19 N -0.695 5.695 20 C 0.118 3.882 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.053 0.947 24 H 0.257 0.743 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.091 0.909 33 H 0.344 0.656 34 H 0.019 0.981 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 -4.680 8.259 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.053 3.947 3 H 0.012 0.988 4 C -0.535 4.535 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.769 3.231 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.151 4.151 13 H 0.108 0.892 14 C -0.199 4.199 15 C -0.110 4.110 16 C -0.118 4.118 17 C -0.144 4.144 18 C -0.074 4.074 19 N -0.326 5.326 20 C -0.011 4.011 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.161 0.839 34 H 0.037 0.963 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.975 -4.396 8.744 12.624 hybrid contribution 0.060 -0.494 -2.120 2.178 sum 8.034 -4.890 6.624 11.504 Atomic orbital electron populations 1.21649 0.98692 0.98730 0.99489 1.18200 0.92302 0.93413 0.90800 0.98757 1.21392 1.29508 1.11509 0.91093 0.93158 1.25644 0.95782 0.95819 1.01504 1.70029 1.38382 1.24373 1.23402 0.85747 0.78138 0.78792 0.80453 1.19372 1.20933 1.21000 1.22509 0.93850 1.01051 0.97687 0.89201 1.23040 1.04441 0.96445 0.95942 1.21323 0.92204 0.97986 0.99467 1.21201 0.97125 0.94282 0.99238 1.21550 0.94008 1.01238 0.97613 1.21956 0.98852 0.89721 0.96845 1.60378 1.03536 1.25158 1.43533 1.21175 0.88015 0.98541 0.93380 0.95455 0.95568 0.92764 0.93358 0.90812 0.87948 0.90971 0.92909 0.89578 0.91395 0.96263 0.89092 0.83853 0.96307 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.95 71.98 0.64 -5.68 16 2 C 0.07 3.59 1.81 -11.54 -0.02 3.57 16 3 H -0.01 -0.32 7.33 -2.38 -0.02 -0.34 16 4 C -0.50 -26.83 6.70 25.60 0.17 -26.66 16 5 H 0.05 2.72 6.77 -2.91 -0.02 2.70 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 8 Si 0.94 44.00 29.54 68.60 2.03 46.02 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C -0.13 -5.50 4.83 -10.86 -0.05 -5.55 16 13 H 0.09 3.60 8.11 -2.38 -0.02 3.58 16 14 C -0.16 -5.85 9.57 30.55 0.29 -5.56 16 15 C -0.11 -4.05 1.93 -52.18 -0.10 -4.15 16 16 C -0.08 -2.44 5.76 30.79 0.18 -2.26 16 17 C -0.11 -2.64 6.12 30.71 0.19 -2.45 16 18 C 0.06 1.45 6.44 86.33 0.56 2.01 16 19 N -0.69 -21.96 6.85 -513.52 -3.52 -25.48 16 20 C 0.12 4.65 4.67 86.33 0.40 5.06 16 21 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.05 2.98 6.07 -2.39 -0.01 2.96 16 24 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 25 H 0.07 2.85 8.05 -2.38 -0.02 2.83 16 26 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.07 1.95 8.08 -2.39 -0.02 1.94 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.02 0.53 8.13 -2.39 -0.02 0.51 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.34 9.76 8.90 -89.69 -0.80 8.97 16 34 H 0.02 0.83 6.87 -2.39 -0.02 0.81 16 35 H 0.05 2.28 7.04 -2.39 -0.02 2.27 16 Total: -1.00 -59.42 271.78 1.71 -57.70 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.25 Total: 15.88 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 2.71 Total: -40.70 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.28 Total: -78.91 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -59.42 1.71 -57.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.451 kcal (2) G-P(sol) polarization free energy of solvation -59.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds