Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47021 * 2 1 4 4 C 1.50701 * 109.47069 * 240.00192 * 2 1 3 5 5 H 1.07999 * 120.00041 * 245.73136 * 4 2 1 6 6 C 1.37875 * 120.00167 * 65.72890 * 4 2 1 7 7 N 1.31512 * 119.99846 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47223 * 60.00193 * 8 6 4 10 10 H 1.48500 * 109.47040 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46797 * 300.00058 * 8 6 4 12 12 C 1.53000 * 109.47173 * 120.00331 * 2 1 3 13 13 H 1.08999 * 115.56428 * 41.83008 * 12 2 1 14 14 C 1.53041 * 117.50089 * 256.11332 * 12 2 1 15 15 C 1.52773 * 59.94340 * 252.52567 * 14 12 2 16 16 C 1.53242 * 117.75123 * 107.70255 * 15 14 12 17 17 C 1.53154 * 108.45474 * 197.10474 * 16 15 14 18 18 C 1.53003 * 109.28409 * 305.65200 * 17 16 15 19 19 N 1.46783 * 109.81176 * 62.33784 * 18 17 16 20 20 C 1.47056 * 111.19315 * 295.21714 * 19 18 17 21 21 H 1.09003 * 109.46892 * 59.99910 * 1 2 3 22 22 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47043 * 300.00115 * 1 2 3 24 24 H 0.97006 * 119.99971 * 179.97438 * 7 6 4 25 25 H 1.09005 * 117.50472 * 145.05197 * 14 12 2 26 26 H 1.09004 * 117.53341 * 359.97438 * 14 12 2 27 27 H 1.09005 * 109.63268 * 316.79705 * 16 15 14 28 28 H 1.08998 * 109.63416 * 77.39171 * 16 15 14 29 29 H 1.09006 * 109.40157 * 185.75490 * 17 16 15 30 30 H 1.09002 * 109.54656 * 65.63856 * 17 16 15 31 31 H 1.09001 * 109.40116 * 302.25121 * 18 17 16 32 32 H 1.08999 * 109.40329 * 182.42197 * 18 17 16 33 33 H 1.00904 * 111.00202 * 171.12330 * 19 18 17 34 34 H 1.08997 * 109.56963 * 177.91308 * 20 19 18 35 35 H 1.09002 * 109.56657 * 298.14524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5748 -1.6393 -1.1342 6 6 1.7994 -0.1745 -2.4793 7 7 1.1393 0.9569 -2.5966 8 14 2.4215 -1.0554 -4.0046 9 1 1.8151 -2.4090 -4.0763 10 1 2.0445 -0.2789 -5.2130 11 1 3.8999 -1.1782 -3.9369 12 6 2.0400 -0.7213 1.2492 13 1 1.5061 -1.6331 1.5168 14 6 2.5828 0.1410 2.3911 15 6 3.5417 -0.6757 1.5266 16 6 4.4278 0.0824 0.5324 17 6 4.9679 -0.9166 -0.4952 18 6 5.6662 -2.0653 0.2355 19 7 4.6997 -2.7792 1.0786 20 6 4.1901 -1.9138 2.1527 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.9757 1.3342 -3.4752 25 1 2.4059 -0.2035 3.4100 26 1 2.5771 1.2222 2.2526 27 1 3.8387 0.8468 0.0257 28 1 5.2584 0.5479 1.0630 29 1 5.6809 -0.4140 -1.1488 30 1 4.1432 -1.3107 -1.0891 31 1 6.4651 -1.6649 0.8597 32 1 6.0888 -2.7553 -0.4949 33 1 5.1032 -3.6238 1.4555 34 1 3.4489 -2.4572 2.7387 35 1 5.0140 -1.6094 2.7982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = 13.039119 kcal Electronic energy + Delta-G solvation = -14792.044284 eV Core-core repulsion = 12597.034166 eV Total energy + Delta-G solvation = -2195.010117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95475 -35.33877 -33.09356 -31.10345 -30.01570 -26.77216 -24.99612 -23.42777 -22.07598 -20.90337 -19.40410 -17.49162 -16.02592 -15.88248 -14.71151 -14.21070 -13.81634 -13.61857 -13.23203 -12.58799 -12.39677 -11.99908 -11.74491 -11.35929 -11.14277 -10.77526 -10.72348 -10.57872 -10.36032 -10.29118 -9.91606 -9.68980 -9.31860 -8.82421 -8.64817 -8.30975 -8.21496 -7.90303 -5.86957 -3.86788 3.39248 3.43757 3.47385 4.40418 4.54783 4.97871 5.30900 5.45438 5.48464 5.69452 5.76185 5.80988 5.90239 6.04068 6.14839 6.24460 6.35807 6.38896 6.63756 6.69778 6.78720 6.89240 6.96349 7.02806 7.20348 7.37892 7.39284 7.48266 7.55130 7.82941 7.88921 8.10652 8.20183 8.62771 9.16379 9.73625 11.21269 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.014498 C = 0.010850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.601456 B = 1930.823967 C = 2580.035781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 H 0.029 0.971 4 C -0.489 4.489 5 H 0.069 0.931 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.880 3.120 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.276 1.276 12 C -0.094 4.094 13 H 0.083 0.917 14 C -0.195 4.195 15 C -0.116 4.116 16 C -0.067 4.067 17 C -0.131 4.131 18 C 0.064 3.936 19 N -0.681 5.681 20 C 0.102 3.898 21 H 0.071 0.929 22 H 0.025 0.975 23 H 0.007 0.993 24 H 0.257 0.743 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.330 0.670 34 H 0.066 0.934 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -3.614 6.904 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.047 0.953 4 C -0.528 4.528 5 H 0.086 0.914 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.708 3.292 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.202 1.202 12 C -0.113 4.113 13 H 0.101 0.899 14 C -0.233 4.233 15 C -0.117 4.117 16 C -0.104 4.104 17 C -0.168 4.168 18 C -0.065 4.065 19 N -0.311 5.311 20 C -0.027 4.027 21 H 0.090 0.910 22 H 0.044 0.956 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.593 -3.360 6.336 9.095 hybrid contribution 1.142 -0.430 -0.209 1.238 sum 6.735 -3.790 6.127 9.862 Atomic orbital electron populations 1.21729 0.99132 0.98655 0.99353 1.18331 0.91745 0.95139 0.89577 0.95261 1.21191 1.33655 1.07894 0.90015 0.91360 1.24928 0.95645 0.94983 0.98622 1.69917 1.41434 1.19002 1.23249 0.86855 0.79463 0.79828 0.83055 1.20414 1.21706 1.20166 1.22610 0.93220 0.98923 0.96498 0.89889 1.23107 1.06558 0.98138 0.95507 1.21224 0.93251 0.96705 1.00500 1.20940 0.96781 0.97697 0.95003 1.21944 1.01588 0.95063 0.98237 1.21887 0.92365 0.96657 0.95637 1.60179 1.40150 1.07539 1.23206 1.21416 0.97135 0.92781 0.91331 0.91049 0.95613 0.97417 0.93298 0.90630 0.89556 0.89928 0.94740 0.93351 0.86712 0.96706 0.91935 0.85281 0.91594 0.96219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.02 37.16 0.34 -2.84 16 2 C 0.07 1.73 1.59 -91.77 -0.15 1.58 16 3 H 0.03 0.79 6.90 -51.93 -0.36 0.43 16 4 C -0.49 -12.88 5.81 -34.44 -0.20 -13.08 16 5 H 0.07 1.83 5.82 -52.49 -0.31 1.53 16 6 C 0.06 1.58 5.33 -17.82 -0.09 1.49 16 7 N -0.90 -25.59 11.75 55.43 0.65 -24.94 16 8 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.09 -1.99 4.69 -90.71 -0.43 -2.41 16 13 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 14 C -0.20 -3.57 9.64 -26.83 -0.26 -3.83 16 15 C -0.12 -2.21 2.04 -154.54 -0.32 -2.52 16 16 C -0.07 -1.32 4.99 -26.53 -0.13 -1.45 16 17 C -0.13 -2.56 5.89 -26.65 -0.16 -2.71 16 18 C 0.06 1.05 6.45 -3.89 -0.03 1.02 16 19 N -0.68 -11.19 6.85 -113.67 -0.78 -11.97 16 20 C 0.10 1.69 6.32 -3.67 -0.02 1.66 16 21 H 0.07 1.90 6.54 -51.93 -0.34 1.56 16 22 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 27 H 0.08 1.86 6.03 -51.93 -0.31 1.55 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 2.62 4.31 -51.93 -0.22 2.39 16 31 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.33 4.45 8.90 -39.29 -0.35 4.10 16 34 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 267.50 15.07 4.03 4.03 Total: -1.00 -27.62 267.50 -8.23 -35.85 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.67 Total: 3.82 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -1.44 Total: -23.08 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.13 Total: -36.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.62 -8.23 -35.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.892 kcal (2) G-P(sol) polarization free energy of solvation -27.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds