Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47021 * 2 1 4 4 C 1.50701 * 109.47069 * 240.00192 * 2 1 3 5 5 H 1.07999 * 120.00041 * 245.73136 * 4 2 1 6 6 C 1.37875 * 120.00167 * 65.72890 * 4 2 1 7 7 N 1.31512 * 119.99846 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47223 * 60.00193 * 8 6 4 10 10 H 1.48500 * 109.47040 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46797 * 300.00058 * 8 6 4 12 12 C 1.53000 * 109.47173 * 120.00331 * 2 1 3 13 13 H 1.08999 * 115.56428 * 41.83008 * 12 2 1 14 14 C 1.53041 * 117.50089 * 256.11332 * 12 2 1 15 15 C 1.52773 * 59.94340 * 252.52567 * 14 12 2 16 16 C 1.53242 * 117.75123 * 107.70255 * 15 14 12 17 17 C 1.53154 * 108.45474 * 197.10474 * 16 15 14 18 18 C 1.53003 * 109.28409 * 305.65200 * 17 16 15 19 19 N 1.46783 * 109.81176 * 62.33784 * 18 17 16 20 20 C 1.47056 * 111.19315 * 295.21714 * 19 18 17 21 21 H 1.09003 * 109.46892 * 59.99910 * 1 2 3 22 22 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47043 * 300.00115 * 1 2 3 24 24 H 0.97006 * 119.99971 * 179.97438 * 7 6 4 25 25 H 1.09005 * 117.50472 * 145.05197 * 14 12 2 26 26 H 1.09004 * 117.53341 * 359.97438 * 14 12 2 27 27 H 1.09005 * 109.63268 * 316.79705 * 16 15 14 28 28 H 1.08998 * 109.63416 * 77.39171 * 16 15 14 29 29 H 1.09006 * 109.40157 * 185.75490 * 17 16 15 30 30 H 1.09002 * 109.54656 * 65.63856 * 17 16 15 31 31 H 1.09001 * 109.40116 * 302.25121 * 18 17 16 32 32 H 1.08999 * 109.40329 * 182.42197 * 18 17 16 33 33 H 1.00904 * 111.00202 * 171.12330 * 19 18 17 34 34 H 1.08997 * 109.56963 * 177.91308 * 20 19 18 35 35 H 1.09002 * 109.56657 * 298.14524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5748 -1.6393 -1.1342 6 6 1.7994 -0.1745 -2.4793 7 7 1.1393 0.9569 -2.5966 8 14 2.4215 -1.0554 -4.0046 9 1 1.8151 -2.4090 -4.0763 10 1 2.0445 -0.2789 -5.2130 11 1 3.8999 -1.1782 -3.9369 12 6 2.0400 -0.7213 1.2492 13 1 1.5061 -1.6331 1.5168 14 6 2.5828 0.1410 2.3911 15 6 3.5417 -0.6757 1.5266 16 6 4.4278 0.0824 0.5324 17 6 4.9679 -0.9166 -0.4952 18 6 5.6662 -2.0653 0.2355 19 7 4.6997 -2.7792 1.0786 20 6 4.1901 -1.9138 2.1527 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.9757 1.3342 -3.4752 25 1 2.4059 -0.2035 3.4100 26 1 2.5771 1.2222 2.2526 27 1 3.8387 0.8468 0.0257 28 1 5.2584 0.5479 1.0630 29 1 5.6809 -0.4140 -1.1488 30 1 4.1432 -1.3107 -1.0891 31 1 6.4651 -1.6649 0.8597 32 1 6.0888 -2.7553 -0.4949 33 1 5.1032 -3.6238 1.4555 34 1 3.4489 -2.4572 2.7387 35 1 5.0140 -1.6094 2.7982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -3.679614 kcal Electronic energy + Delta-G solvation = -14792.769262 eV Core-core repulsion = 12597.034166 eV Total energy + Delta-G solvation = -2195.735096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46163 -36.86258 -35.00476 -32.55411 -31.97180 -28.20555 -27.06475 -24.87401 -23.83746 -22.32785 -21.10756 -19.12856 -17.97589 -17.26591 -16.63163 -15.70115 -15.36183 -15.07808 -14.74487 -14.47785 -13.90071 -13.56560 -13.37250 -13.08738 -12.85877 -12.71624 -12.65346 -12.29321 -12.20946 -11.94295 -11.62429 -11.27833 -11.04437 -10.62549 -10.35340 -10.24642 -10.03975 -9.15785 -7.97022 -6.00829 1.44266 1.44904 1.51346 2.50748 3.02959 3.33652 3.62748 3.87980 4.09186 4.23503 4.31625 4.38710 4.55597 4.75114 4.76812 4.82241 4.87441 4.91188 5.00087 5.04753 5.10555 5.18583 5.26060 5.38175 5.48496 5.54406 5.69885 5.73935 5.92056 6.10052 6.17422 6.21565 6.57372 6.72591 7.07699 7.61929 9.10512 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.014498 C = 0.010850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.601456 B = 1930.823967 C = 2580.035781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.072 3.928 3 H -0.003 1.003 4 C -0.480 4.480 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.931 3.069 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.268 1.268 12 C -0.119 4.119 13 H 0.084 0.916 14 C -0.175 4.175 15 C -0.113 4.113 16 C -0.067 4.067 17 C -0.134 4.134 18 C 0.070 3.930 19 N -0.696 5.696 20 C 0.106 3.894 21 H 0.041 0.959 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.254 0.746 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.351 0.649 34 H 0.077 0.923 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 -5.023 8.394 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 H 0.015 0.985 4 C -0.518 4.518 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.570 5.570 8 Si 0.759 3.241 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.193 1.193 12 C -0.137 4.137 13 H 0.102 0.898 14 C -0.213 4.213 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.171 4.171 18 C -0.059 4.059 19 N -0.329 5.329 20 C -0.023 4.023 21 H 0.061 0.939 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.031 -4.793 7.838 11.569 hybrid contribution 0.697 0.036 -0.651 0.954 sum 7.727 -4.757 7.187 11.576 Atomic orbital electron populations 1.21608 0.99149 0.98558 0.98840 1.18204 0.91728 0.93617 0.91112 0.98485 1.21390 1.32385 1.07316 0.90754 0.91805 1.25563 0.96217 0.95649 1.01228 1.70049 1.43092 1.20453 1.23400 0.86014 0.79373 0.78724 0.80025 1.20153 1.21983 1.19262 1.22349 0.95343 0.99578 0.96415 0.89797 1.23131 1.04596 0.97441 0.96106 1.21353 0.91867 0.97909 1.00171 1.20876 0.97086 0.97065 0.95372 1.21870 1.00737 0.96269 0.98260 1.21781 0.92320 0.95757 0.96042 1.60088 1.40739 1.08436 1.23634 1.21400 0.97941 0.91569 0.91346 0.93950 0.95335 0.95486 0.93719 0.87477 0.90373 0.93883 0.92729 0.93080 0.90226 0.94807 0.90630 0.83002 0.90415 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 9.02 71.98 0.65 -5.44 16 2 C 0.07 3.58 1.59 -11.54 -0.02 3.57 16 3 H 0.00 -0.16 6.90 -2.39 -0.02 -0.18 16 4 C -0.48 -25.70 5.81 25.60 0.15 -25.56 16 5 H 0.06 3.45 5.82 -2.91 -0.02 3.44 16 6 C 0.01 0.55 5.33 84.65 0.45 1.00 16 7 N -0.93 -54.74 11.75 21.45 0.25 -54.49 16 8 Si 0.93 44.37 29.54 68.60 2.03 46.39 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 10 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C -0.12 -4.88 4.69 -10.85 -0.05 -4.93 16 13 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 14 C -0.18 -6.01 9.64 30.53 0.29 -5.72 16 15 C -0.11 -4.04 2.04 -52.20 -0.11 -4.14 16 16 C -0.07 -2.57 4.99 30.73 0.15 -2.41 16 17 C -0.13 -5.07 5.89 30.65 0.18 -4.89 16 18 C 0.07 2.10 6.45 86.33 0.56 2.65 16 19 N -0.70 -20.55 6.85 -513.53 -3.52 -24.06 16 20 C 0.11 3.10 6.32 86.32 0.55 3.65 16 21 H 0.04 2.31 6.54 -2.39 -0.02 2.29 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 25 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 26 H 0.08 2.81 8.10 -2.38 -0.02 2.79 16 27 H 0.04 1.98 6.03 -2.38 -0.01 1.97 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.08 3.61 4.31 -2.39 -0.01 3.60 16 31 H 0.03 0.90 8.13 -2.39 -0.02 0.88 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.35 8.04 8.90 -89.69 -0.80 7.24 16 34 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -59.87 267.50 1.83 -58.04 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.26 Total: 16.34 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.80 Total: -42.22 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -3.27 Total: -78.55 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.87 1.83 -58.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.358 kcal (2) G-P(sol) polarization free energy of solvation -59.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds