Wall clock time and date at job start Mon Mar 30 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46781 * 110.99363 * 2 1 4 4 C 1.53004 * 109.89440 * 188.89022 * 3 2 1 5 5 C 1.53330 * 109.19753 * 297.74566 * 4 3 2 6 6 C 1.53241 * 108.50676 * 54.28152 * 5 4 3 7 7 C 1.52794 * 117.71824 * 93.87146 * 6 5 4 8 8 C 1.52759 * 117.77965 * 162.81683 * 6 5 4 9 9 H 1.08993 * 117.50505 * 144.81993 * 8 6 5 10 10 C 1.53000 * 117.50088 * 359.79550 * 8 6 5 11 11 C 1.50703 * 109.46912 * 175.00215 * 10 8 6 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.47053 * 110.99791 * 124.21249 * 2 1 3 20 20 H 1.09000 * 109.47159 * 56.04993 * 1 2 3 21 21 H 1.09002 * 109.46389 * 176.04718 * 1 2 3 22 22 H 1.08999 * 109.47417 * 296.03912 * 1 2 3 23 23 H 1.09006 * 109.39933 * 68.76447 * 3 2 1 24 24 H 1.08996 * 109.33754 * 308.97469 * 3 2 1 25 25 H 1.08991 * 109.51961 * 177.83042 * 4 3 2 26 26 H 1.09001 * 109.56075 * 57.68756 * 4 3 2 27 27 H 1.08998 * 109.63644 * 294.57993 * 5 4 3 28 28 H 1.08994 * 109.63202 * 173.98273 * 5 4 3 29 29 H 1.09001 * 117.50434 * 0.30916 * 7 6 5 30 30 H 1.08995 * 117.50430 * 215.24395 * 7 6 5 31 31 H 1.09002 * 109.47398 * 295.00293 * 10 8 6 32 32 H 1.09001 * 109.47194 * 55.00474 * 10 8 6 33 33 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.56705 * 57.99926 * 19 2 1 35 35 H 1.08994 * 109.56565 * 297.64494 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9949 1.3704 0.0000 4 6 3.5085 1.3472 -0.2223 5 6 4.1767 0.5956 0.9351 6 6 3.5255 -0.7861 1.0582 7 6 4.1909 -1.9528 0.3299 8 6 4.2699 -1.8556 1.8554 9 1 3.6720 -2.5575 2.4365 10 6 5.6168 -1.4692 2.4698 11 6 6.1303 -2.6089 3.3116 12 1 5.5539 -3.5179 3.3991 13 6 7.3360 -2.4909 3.9699 14 7 8.0382 -1.3840 3.8629 15 14 7.9729 -3.9039 5.0127 16 1 7.0033 -5.0278 4.9687 17 1 9.2832 -4.3590 4.4823 18 1 8.1384 -3.4479 6.4162 19 6 1.9960 -0.7719 1.1353 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3632 -1.0253 -0.0708 22 1 -0.3634 0.4511 0.9233 23 1 1.7770 1.8418 0.9584 24 1 1.5203 1.9391 -0.7996 25 1 3.8868 2.3687 -0.2597 26 1 3.7317 0.8416 -1.1619 27 1 4.0355 1.1508 1.8624 28 1 5.2414 0.4817 0.7316 29 1 5.0984 -1.7414 -0.2356 30 1 3.5409 -2.7190 -0.0926 31 1 6.3307 -1.2543 1.6747 32 1 5.4910 -0.5845 3.0940 33 1 8.8863 -1.3009 4.3264 34 1 1.6187 -1.7934 1.0887 35 1 1.6819 -0.3072 2.0699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:21 Heat of formation + Delta-G solvation = 8.980638 kcal Electronic energy + Delta-G solvation = -14009.725532 eV Core-core repulsion = 11814.539425 eV Total energy + Delta-G solvation = -2195.186106 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23113 -36.06813 -32.81914 -32.25305 -28.85949 -26.89468 -26.51905 -23.27823 -22.61896 -21.49863 -19.44473 -17.85394 -16.37967 -15.42702 -14.92889 -14.63992 -14.48958 -13.91625 -13.32387 -12.95265 -12.64900 -12.34183 -12.13638 -12.00682 -11.63271 -11.38604 -10.92683 -10.84890 -10.68098 -10.51609 -10.47791 -10.06434 -9.64426 -9.18075 -8.93707 -8.61385 -8.23606 -8.13541 -5.96960 -3.98209 3.33124 3.40497 3.44908 3.99775 4.48550 4.67518 5.06334 5.08969 5.27812 5.38007 5.40061 5.51285 5.54508 5.61030 5.73111 5.79191 5.83566 5.95015 6.00954 6.13246 6.20852 6.29989 6.45958 6.55937 6.71744 6.82511 6.92556 7.15684 7.22992 7.25821 7.73079 7.83615 8.02888 8.47691 9.07915 9.65108 11.14333 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.059118 B = 0.006760 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.511604 B = 4140.868966 C = 4398.971699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.059 3.941 4 C -0.113 4.113 5 C -0.078 4.078 6 C -0.139 4.139 7 C -0.165 4.165 8 C -0.109 4.109 9 H 0.089 0.911 10 C 0.051 3.949 11 C -0.514 4.514 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.098 3.902 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.021 0.979 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.259 0.741 34 H 0.071 0.929 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 4.260 -7.011 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.069 4.069 4 C -0.151 4.151 5 C -0.116 4.116 6 C -0.139 4.139 7 C -0.202 4.202 8 C -0.127 4.127 9 H 0.107 0.893 10 C 0.014 3.986 11 C -0.552 4.552 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.029 4.029 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.456 4.118 -7.388 14.240 hybrid contribution 0.103 -0.382 1.328 1.386 sum -11.353 3.735 -6.060 13.400 Atomic orbital electron populations 1.22342 0.88041 1.01926 0.99997 1.61957 1.06673 1.13804 1.44118 1.22024 0.96322 0.88957 0.99621 1.21594 0.93808 0.99806 0.99918 1.21093 0.99607 0.93475 0.97377 1.21447 0.92127 0.91861 1.08455 1.22974 1.01499 0.99305 0.96425 1.22814 0.99938 0.97895 0.92098 0.89314 1.18728 0.88114 0.96561 0.95198 1.21302 1.04512 1.00997 1.28387 0.92631 1.25016 0.96915 0.95770 0.96850 1.69973 1.14110 1.25970 1.43610 0.86550 0.78799 0.82621 0.80125 1.19759 1.21051 1.21086 1.21637 0.93301 0.97529 0.90426 0.91740 0.91584 0.96053 0.95252 0.91522 0.91999 0.91287 0.92230 0.90924 0.89552 0.90270 0.96275 0.96108 0.93115 0.91050 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.60 60.07 0.58 0.86 16 2 N -0.54 -7.65 4.91 -242.79 -1.19 -8.84 16 3 C 0.06 0.78 5.38 -3.89 -0.02 0.75 16 4 C -0.11 -1.60 6.12 -26.56 -0.16 -1.77 16 5 C -0.08 -1.35 5.00 -26.44 -0.13 -1.48 16 6 C -0.14 -2.49 2.11 -154.54 -0.33 -2.82 16 7 C -0.16 -3.10 9.57 -26.81 -0.26 -3.36 16 8 C -0.11 -2.31 5.43 -90.71 -0.49 -2.81 16 9 H 0.09 1.89 8.00 -51.93 -0.42 1.47 16 10 C 0.05 1.32 4.11 -27.88 -0.11 1.21 16 11 C -0.51 -14.68 9.08 -34.44 -0.31 -14.99 16 12 H 0.06 1.55 7.68 -52.49 -0.40 1.15 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.10 1.55 5.22 -3.66 -0.02 1.53 16 20 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.39 8.13 -51.93 -0.42 -0.03 16 24 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.37 7.29 -51.93 -0.38 0.99 16 29 H 0.09 1.66 8.03 -51.93 -0.42 1.24 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 32 H 0.02 0.58 8.03 -51.93 -0.42 0.16 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 280.34 15.07 4.22 4.22 Total: -1.00 -29.81 280.34 -8.81 -38.62 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.20 Total: -3.10 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.36 Total: -21.37 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.46 Total: -35.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.81 -8.81 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.601 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds