Wall clock time and date at job start Mon Mar 30 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46781 * 110.99363 * 2 1 4 4 C 1.53004 * 109.89440 * 188.89022 * 3 2 1 5 5 C 1.53330 * 109.19753 * 297.74566 * 4 3 2 6 6 C 1.53241 * 108.50676 * 54.28152 * 5 4 3 7 7 C 1.52794 * 117.71824 * 93.87146 * 6 5 4 8 8 C 1.52759 * 117.77965 * 162.81683 * 6 5 4 9 9 H 1.08993 * 117.50505 * 144.81993 * 8 6 5 10 10 C 1.53000 * 117.50088 * 359.79550 * 8 6 5 11 11 C 1.50703 * 109.46912 * 175.00215 * 10 8 6 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.47053 * 110.99791 * 124.21249 * 2 1 3 20 20 H 1.09000 * 109.47159 * 56.04993 * 1 2 3 21 21 H 1.09002 * 109.46389 * 176.04718 * 1 2 3 22 22 H 1.08999 * 109.47417 * 296.03912 * 1 2 3 23 23 H 1.09006 * 109.39933 * 68.76447 * 3 2 1 24 24 H 1.08996 * 109.33754 * 308.97469 * 3 2 1 25 25 H 1.08991 * 109.51961 * 177.83042 * 4 3 2 26 26 H 1.09001 * 109.56075 * 57.68756 * 4 3 2 27 27 H 1.08998 * 109.63644 * 294.57993 * 5 4 3 28 28 H 1.08994 * 109.63202 * 173.98273 * 5 4 3 29 29 H 1.09001 * 117.50434 * 0.30916 * 7 6 5 30 30 H 1.08995 * 117.50430 * 215.24395 * 7 6 5 31 31 H 1.09002 * 109.47398 * 295.00293 * 10 8 6 32 32 H 1.09001 * 109.47194 * 55.00474 * 10 8 6 33 33 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.56705 * 57.99926 * 19 2 1 35 35 H 1.08994 * 109.56565 * 297.64494 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9949 1.3704 0.0000 4 6 3.5085 1.3472 -0.2223 5 6 4.1767 0.5956 0.9351 6 6 3.5255 -0.7861 1.0582 7 6 4.1909 -1.9528 0.3299 8 6 4.2699 -1.8556 1.8554 9 1 3.6720 -2.5575 2.4365 10 6 5.6168 -1.4692 2.4698 11 6 6.1303 -2.6089 3.3116 12 1 5.5539 -3.5179 3.3991 13 6 7.3360 -2.4909 3.9699 14 7 8.0382 -1.3840 3.8629 15 14 7.9729 -3.9039 5.0127 16 1 7.0033 -5.0278 4.9687 17 1 9.2832 -4.3590 4.4823 18 1 8.1384 -3.4479 6.4162 19 6 1.9960 -0.7719 1.1353 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3632 -1.0253 -0.0708 22 1 -0.3634 0.4511 0.9233 23 1 1.7770 1.8418 0.9584 24 1 1.5203 1.9391 -0.7996 25 1 3.8868 2.3687 -0.2597 26 1 3.7317 0.8416 -1.1619 27 1 4.0355 1.1508 1.8624 28 1 5.2414 0.4817 0.7316 29 1 5.0984 -1.7414 -0.2356 30 1 3.5409 -2.7190 -0.0926 31 1 6.3307 -1.2543 1.6747 32 1 5.4910 -0.5845 3.0940 33 1 8.8863 -1.3009 4.3264 34 1 1.6187 -1.7934 1.0887 35 1 1.6819 -0.3072 2.0699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:21 Heat of formation + Delta-G solvation = -8.969737 kcal Electronic energy + Delta-G solvation = -14010.503918 eV Core-core repulsion = 11814.539425 eV Total energy + Delta-G solvation = -2195.964493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58919 -37.43854 -34.91911 -33.51733 -30.72799 -28.40877 -27.62469 -25.29537 -23.85426 -22.77749 -21.05834 -19.27965 -18.54070 -16.67775 -16.54431 -16.14773 -15.79760 -15.24955 -14.70217 -14.48121 -14.23832 -13.89811 -13.56462 -13.40259 -13.12485 -12.80067 -12.73722 -12.46495 -12.39279 -11.95110 -11.87794 -11.60349 -11.40995 -11.12807 -10.76904 -10.39760 -10.16194 -9.22694 -8.19437 -6.29973 1.39525 1.39865 1.53444 2.40688 2.79237 3.12552 3.27954 3.74464 3.88827 4.09328 4.11660 4.19968 4.37843 4.49082 4.55734 4.59848 4.71028 4.81462 4.85869 4.88616 4.98129 5.01414 5.04096 5.07164 5.14922 5.32344 5.42016 5.49033 5.55329 5.69228 5.84276 6.11321 6.22004 6.28015 6.85698 7.38680 8.92420 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.059118 B = 0.006760 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.511604 B = 4140.868966 C = 4398.971699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.058 3.942 4 C -0.106 4.106 5 C -0.082 4.082 6 C -0.119 4.119 7 C -0.153 4.153 8 C -0.137 4.137 9 H 0.089 0.911 10 C 0.064 3.936 11 C -0.537 4.537 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.104 3.896 20 H 0.083 0.917 21 H 0.072 0.928 22 H 0.025 0.975 23 H 0.028 0.972 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.101 0.899 31 H -0.009 1.009 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 3.833 -7.607 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.190 4.190 8 C -0.156 4.156 9 H 0.107 0.893 10 C 0.027 3.973 11 C -0.575 4.575 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.024 4.024 20 H 0.101 0.899 21 H 0.091 0.909 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.069 3.692 -7.995 15.759 hybrid contribution 0.608 -0.199 1.495 1.627 sum -12.461 3.493 -6.499 14.481 Atomic orbital electron populations 1.22422 0.85912 1.02885 1.01048 1.61948 1.08599 1.14091 1.42898 1.22078 0.95340 0.88892 1.00619 1.21551 0.94673 1.00245 0.97892 1.21105 0.98464 0.93803 0.98608 1.21539 0.93867 0.91347 1.05207 1.22971 1.01600 1.00318 0.94083 1.22494 0.98453 1.00925 0.93706 0.89269 1.18446 0.90205 0.94874 0.93744 1.21726 1.05076 1.01707 1.29006 0.92356 1.25978 0.97117 0.98634 0.98143 1.70106 1.14616 1.28172 1.44608 0.85392 0.78274 0.79155 0.78187 1.18637 1.20329 1.20315 1.21537 0.91110 0.98511 0.91247 0.89851 0.90909 0.95627 0.95329 0.88842 0.90099 0.91472 0.93139 0.93603 0.90558 0.88037 0.99101 0.99133 0.92798 0.90293 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.60 127.69 1.23 1.70 16 2 N -0.55 -14.01 4.91 -922.04 -4.53 -18.54 16 3 C 0.06 1.38 5.38 86.33 0.46 1.84 16 4 C -0.11 -2.83 6.12 30.71 0.19 -2.64 16 5 C -0.08 -2.89 5.00 30.79 0.15 -2.73 16 6 C -0.12 -4.27 2.11 -52.20 -0.11 -4.38 16 7 C -0.15 -5.70 9.57 30.54 0.29 -5.41 16 8 C -0.14 -5.97 5.43 -10.85 -0.06 -6.03 16 9 H 0.09 3.84 8.00 -2.39 -0.02 3.82 16 10 C 0.06 3.51 4.11 29.85 0.12 3.63 16 11 C -0.54 -31.52 9.08 25.60 0.23 -31.28 16 12 H 0.06 3.30 7.68 -2.91 -0.02 3.28 16 13 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 14 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 15 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 C 0.10 3.08 5.22 86.32 0.45 3.53 16 20 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.03 0.69 8.13 -2.38 -0.02 0.67 16 24 H 0.09 1.75 8.03 -2.39 -0.02 1.74 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.82 7.29 -2.39 -0.02 1.80 16 29 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 30 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 31 H -0.01 -0.55 7.57 -2.39 -0.02 -0.57 16 32 H -0.01 -0.57 8.03 -2.39 -0.02 -0.59 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.99 280.34 2.22 -62.77 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.02 Total: 7.67 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.42 Total: -41.39 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -4.25 Total: -76.23 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.99 2.22 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.798 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds