Wall clock time and date at job start Mon Mar 30 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46675 * 110.99645 * 2 1 4 4 C 1.53310 * 108.35075 * 186.36492 * 3 2 1 5 5 C 1.50848 * 108.80305 * 297.85058 * 4 3 2 6 6 H 1.09006 * 107.54445 * 298.83190 * 5 4 3 7 7 C 1.50702 * 109.79597 * 180.02562 * 5 4 3 8 8 H 1.08003 * 119.99367 * 237.33945 * 7 5 4 9 9 C 1.37869 * 120.00520 * 57.33889 * 7 5 4 10 10 N 1.31522 * 119.99947 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00182 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47023 * 89.99913 * 11 9 7 13 13 H 1.48502 * 109.46757 * 209.99688 * 11 9 7 14 14 H 1.48493 * 109.47088 * 330.00019 * 11 9 7 15 15 C 1.53146 * 111.54650 * 58.67503 * 5 4 3 16 16 H 1.08993 * 111.59972 * 74.45761 * 15 5 4 17 17 C 1.55106 * 107.75142 * 197.54050 * 15 5 4 18 18 C 1.53997 * 106.35799 * 91.51484 * 17 15 5 19 19 C 1.54569 * 106.58818 * 1.45718 * 18 17 15 20 20 C 1.44786 * 110.99992 * 127.12065 * 2 1 3 21 21 H 1.09004 * 109.24049 * 58.18326 * 20 2 1 22 22 H 1.08997 * 109.46980 * 56.04687 * 1 2 3 23 23 H 1.08998 * 109.46724 * 176.04421 * 1 2 3 24 24 H 1.08995 * 109.47413 * 296.04504 * 1 2 3 25 25 H 1.09002 * 109.69553 * 306.09014 * 3 2 1 26 26 H 1.08996 * 109.69551 * 66.63770 * 3 2 1 27 27 H 1.08999 * 109.67742 * 56.93850 * 4 3 2 28 28 H 1.08997 * 109.68040 * 177.48955 * 4 3 2 29 29 H 0.96992 * 120.00006 * 179.97438 * 10 9 7 30 30 H 1.08994 * 110.07776 * 210.74114 * 17 15 5 31 31 H 1.09002 * 110.07663 * 332.23573 * 17 15 5 32 32 H 1.09001 * 110.02789 * 120.74152 * 18 17 15 33 33 H 1.08996 * 110.03470 * 242.17192 * 18 17 15 34 34 H 1.09003 * 110.59762 * 264.51947 * 19 18 17 35 35 H 1.09000 * 110.59579 * 141.57457 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9946 1.3694 0.0000 4 6 3.5177 1.3018 -0.1613 5 6 4.0994 0.5643 1.0190 6 1 3.8486 1.1303 1.9162 7 6 5.5982 0.4854 0.8833 8 1 6.0902 -0.4761 0.8808 9 6 6.3413 1.6403 0.7624 10 7 5.7421 2.8111 0.7649 11 14 8.1991 1.5423 0.5934 12 1 8.5614 1.4541 -0.8440 13 1 8.8147 2.7572 1.1854 14 1 8.6979 0.3379 1.3045 15 6 3.5259 -0.8509 1.1362 16 1 3.9426 -1.5165 0.3805 17 6 3.8129 -1.3599 2.5730 18 6 2.5868 -0.9761 3.4221 19 6 1.5877 -0.2842 2.4670 20 6 1.9879 -0.8157 1.0778 21 1 1.6101 -1.8328 0.9725 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 -0.3634 0.4512 0.9232 25 1 1.5619 1.9289 -0.8293 26 1 1.7463 1.8581 0.9421 27 1 3.7664 0.7609 -1.0743 28 1 3.9269 2.3109 -0.2088 29 1 6.2649 3.6237 0.6802 30 1 3.9405 -2.4423 2.5679 31 1 4.7080 -0.8797 2.9683 32 1 2.1351 -1.8705 3.8512 33 1 2.8821 -0.2892 4.2152 34 1 1.7024 0.7989 2.5110 35 1 0.5645 -0.5726 2.7079 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260202394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:54 Heat of formation + Delta-G solvation = -29.906485 kcal Electronic energy + Delta-G solvation = -14888.099751 eV Core-core repulsion = 12691.227372 eV Total energy + Delta-G solvation = -2196.872379 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05523 -36.22039 -35.72762 -32.92510 -29.85944 -28.70892 -27.93800 -25.70382 -23.34781 -22.78360 -20.85727 -19.10383 -18.56261 -16.96252 -16.38070 -16.22641 -15.81132 -15.15423 -14.68687 -14.44142 -13.99268 -13.66888 -13.13660 -12.98379 -12.88584 -12.72400 -12.36563 -12.29797 -12.12837 -11.90513 -11.84332 -11.74614 -11.39792 -11.02563 -10.63702 -10.51616 -10.25815 -8.97948 -8.03027 -6.16734 1.40349 1.41407 1.50915 2.44878 3.15609 3.22446 3.86082 3.91148 4.06426 4.36550 4.42713 4.49626 4.62792 4.70462 4.70720 4.81930 4.82718 4.91026 4.94345 5.03906 5.05848 5.10742 5.25510 5.30558 5.39652 5.44979 5.63483 5.66599 5.70962 6.09388 6.19557 6.38096 6.47825 6.50990 6.96381 7.50321 8.99281 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039059 B = 0.011308 C = 0.009644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.683920 B = 2475.624534 C = 2902.590074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.553 5.553 3 C 0.071 3.929 4 C -0.104 4.104 5 C 0.062 3.938 6 H -0.013 1.013 7 C -0.522 4.522 8 H 0.048 0.952 9 C 0.011 3.989 10 N -0.918 5.918 11 Si 0.948 3.052 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.269 1.269 15 C -0.075 4.075 16 H 0.055 0.945 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.147 4.147 20 C 0.095 3.905 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.258 0.742 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -6.151 1.718 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.276 5.276 3 C -0.056 4.056 4 C -0.142 4.142 5 C 0.043 3.957 6 H 0.005 0.995 7 C -0.560 4.560 8 H 0.067 0.933 9 C -0.187 4.187 10 N -0.559 5.559 11 Si 0.774 3.226 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.094 4.094 16 H 0.073 0.927 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.186 4.186 20 C -0.014 4.014 21 H 0.105 0.895 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.802 -6.174 1.287 10.828 hybrid contribution 1.069 0.851 0.593 1.489 sum -7.733 -5.323 1.881 9.574 Atomic orbital electron populations 1.22360 0.86098 1.02767 1.00567 1.60687 1.08302 1.12928 1.45653 1.22015 0.96271 0.88666 0.98672 1.21203 0.92505 1.02060 0.98477 1.18172 0.93274 0.91057 0.93190 0.99450 1.21585 0.93443 0.92156 1.48809 0.93332 1.25692 1.02355 0.95318 0.95334 1.69985 1.36301 0.97717 1.51867 0.85704 0.81173 0.77471 0.78207 1.20345 1.21074 1.19398 1.21950 0.93641 0.97658 0.96136 0.92679 1.22282 0.98056 1.00055 0.94840 1.22034 0.95237 1.00296 0.97279 1.22775 0.99413 0.99495 0.96964 1.21825 0.94869 0.96773 0.87923 0.89506 0.91048 0.90225 0.95608 0.91167 0.96477 0.95708 0.91344 0.93250 0.91244 0.93529 0.89700 0.93164 0.94053 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.30 127.69 1.19 1.97 16 2 N -0.55 -19.59 4.72 -898.23 -4.24 -23.83 16 3 C 0.07 2.88 5.32 86.45 0.46 3.34 16 4 C -0.10 -5.18 5.07 30.00 0.15 -5.03 16 5 C 0.06 3.13 1.11 -12.19 -0.01 3.12 16 6 H -0.01 -0.72 7.27 -2.38 -0.02 -0.73 16 7 C -0.52 -29.22 7.89 25.60 0.20 -29.02 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 9 C 0.01 0.61 5.30 84.65 0.45 1.05 16 10 N -0.92 -53.89 11.15 21.45 0.24 -53.65 16 11 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 C -0.07 -3.15 2.83 -9.70 -0.03 -3.18 16 16 H 0.05 2.41 8.12 -2.39 -0.02 2.40 16 17 C -0.11 -4.24 6.08 31.65 0.19 -4.04 16 18 C -0.11 -3.47 6.77 31.46 0.21 -3.26 16 19 C -0.15 -4.76 4.87 31.48 0.15 -4.60 16 20 C 0.10 3.33 2.49 45.98 0.11 3.45 16 21 H 0.09 2.69 8.13 -2.38 -0.02 2.67 16 22 H 0.07 1.73 8.10 -2.39 -0.02 1.72 16 23 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 24 H 0.03 0.66 7.23 -2.39 -0.02 0.64 16 25 H 0.07 2.59 8.09 -2.39 -0.02 2.57 16 26 H 0.02 0.72 6.53 -2.39 -0.02 0.70 16 27 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 3.82 5.88 -2.39 -0.01 3.81 16 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.99 7.30 -2.39 -0.02 1.97 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.56 5.99 -2.39 -0.01 1.54 16 35 H 0.08 2.13 7.87 -2.39 -0.02 2.11 16 Total: -1.00 -60.68 261.00 2.14 -58.54 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.04 Total: 8.55 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.08 Total: -36.20 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -4.00 Total: -77.48 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -60.68 2.14 -58.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260202394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.632 kcal (2) G-P(sol) polarization free energy of solvation -60.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds