Wall clock time and date at job start Mon Mar 30 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40065 * 120.00326 * 2 1 4 4 H 1.08010 * 120.00056 * 204.74327 * 3 2 1 5 5 C 1.40308 * 120.00012 * 24.74255 * 3 2 1 6 6 N 1.30686 * 119.99903 * 14.73778 * 5 3 2 7 7 Si 1.86799 * 120.00075 * 194.73450 * 5 3 2 8 8 H 1.48505 * 109.47367 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47106 * 119.99966 * 7 5 3 10 10 H 1.48497 * 109.47112 * 240.00153 * 7 5 3 11 11 C 1.50703 * 119.99396 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.46553 * 5.00141 * 11 2 1 13 13 C 1.53036 * 109.46235 * 245.01509 * 11 2 1 14 14 C 1.53118 * 109.27788 * 180.81913 * 13 11 2 15 15 C 1.53113 * 109.16489 * 57.65686 * 14 13 11 16 16 C 1.53040 * 109.27723 * 302.34773 * 15 14 13 17 17 N 1.46829 * 109.52018 * 59.17596 * 16 15 14 18 18 C 1.46893 * 110.98506 * 174.15906 * 17 16 15 19 19 C 1.53000 * 109.47384 * 294.21353 * 18 17 16 20 20 H 1.08000 * 119.99434 * 5.90132 * 1 2 3 21 21 H 1.07994 * 120.00324 * 185.91034 * 1 2 3 22 22 H 0.96999 * 120.00154 * 180.02562 * 6 5 3 23 23 H 1.09005 * 109.50178 * 300.76133 * 13 11 2 24 24 H 1.09000 * 109.50242 * 60.83839 * 13 11 2 25 25 H 1.09002 * 109.52185 * 177.55860 * 14 13 11 26 26 H 1.08998 * 109.52062 * 297.68375 * 14 13 11 27 27 H 1.09000 * 109.50367 * 62.28300 * 15 14 13 28 28 H 1.08995 * 109.50649 * 182.40435 * 15 14 13 29 29 H 1.09001 * 109.46430 * 179.19262 * 16 15 14 30 30 H 1.09003 * 109.46264 * 299.17108 * 16 15 14 31 31 H 1.09003 * 109.47542 * 54.21214 * 18 17 16 32 32 H 1.09006 * 109.47337 * 174.21685 * 18 17 16 33 33 H 1.08991 * 109.47708 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.46668 * 300.00396 * 19 18 17 35 35 H 1.09003 * 109.46987 * 59.99538 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0564 1.2559 -0.3915 5 6 1.4458 2.3723 0.5086 6 7 0.3641 2.2796 1.2360 7 14 2.1868 4.0483 0.1460 8 1 3.4005 3.8819 -0.6935 9 1 1.1946 4.8818 -0.5790 10 1 2.5542 4.7135 1.4218 11 6 2.1037 -1.3052 -0.0006 12 1 1.3986 -2.1315 -0.0905 13 6 2.8864 -1.4427 1.3072 14 6 3.6662 -2.7604 1.2935 15 6 4.5938 -2.7828 0.0755 16 6 3.7616 -2.6064 -1.1966 17 7 3.0357 -1.3316 -1.1352 18 6 2.3352 -1.0637 -2.3982 19 6 3.3596 -0.8523 -3.5148 20 1 -0.5399 0.9304 -0.0962 21 1 -0.5400 -0.9303 0.0963 22 1 -0.0543 3.0811 1.5873 23 1 3.5820 -0.6091 1.4044 24 1 2.1932 -1.4382 2.1484 25 1 4.2592 -2.8422 2.2045 26 1 2.9686 -3.5959 1.2367 27 1 5.3163 -1.9704 0.1533 28 1 5.1204 -3.7363 0.0366 29 1 4.4207 -2.6075 -2.0648 30 1 3.0486 -3.4265 -1.2809 31 1 1.6968 -1.9116 -2.6467 32 1 1.7238 -0.1675 -2.2917 33 1 2.8399 -0.6531 -4.4518 34 1 3.9980 -0.0044 -3.2663 35 1 3.9711 -1.7484 -3.6213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260236114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:45 Heat of formation + Delta-G solvation = 5.995334 kcal Electronic energy + Delta-G solvation = -14607.245562 eV Core-core repulsion = 12411.930003 eV Total energy + Delta-G solvation = -2195.315559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.66756 -34.40105 -33.62810 -31.49878 -29.09248 -28.27526 -24.97630 -23.84746 -22.32469 -20.65348 -19.05407 -18.83619 -15.96870 -15.07197 -14.57522 -14.45510 -13.92238 -13.62302 -12.97389 -12.91178 -12.81500 -12.45374 -11.68751 -11.23421 -11.19912 -11.06626 -10.99539 -10.58347 -10.56421 -10.41098 -10.22697 -10.08205 -9.62750 -9.29452 -9.08782 -8.76262 -7.44364 -7.13976 -6.28403 -3.93831 3.15310 3.28422 3.34734 4.13174 4.27367 4.71883 5.33389 5.38451 5.45432 5.63077 5.75258 5.90268 5.95085 6.01647 6.06510 6.08849 6.24811 6.30971 6.39799 6.50495 6.52611 6.62760 6.73635 6.78240 6.96159 7.04118 7.28826 7.52764 7.71937 7.93734 8.02925 8.43358 8.63866 9.14177 9.42656 9.57744 10.69158 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030143 B = 0.011411 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.680065 B = 2453.251017 C = 2729.804421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.352 4.352 2 C 0.040 3.960 3 C -0.446 4.446 4 H 0.071 0.929 5 C 0.069 3.931 6 N -0.807 5.807 7 Si 0.891 3.109 8 H -0.264 1.264 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.129 3.871 12 H 0.016 0.984 13 C -0.098 4.098 14 C -0.122 4.122 15 C -0.113 4.113 16 C 0.052 3.948 17 N -0.519 5.519 18 C 0.053 3.947 19 C -0.144 4.144 20 H 0.094 0.906 21 H 0.034 0.966 22 H 0.267 0.733 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -6.280 -3.454 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.394 4.394 2 C 0.038 3.962 3 C -0.478 4.478 4 H 0.089 0.911 5 C -0.144 4.144 6 N -0.436 5.436 7 Si 0.717 3.283 8 H -0.188 1.188 9 H -0.205 1.205 10 H -0.207 1.207 11 C 0.021 3.979 12 H 0.034 0.966 13 C -0.136 4.136 14 C -0.160 4.160 15 C -0.151 4.151 16 C -0.076 4.076 17 N -0.244 5.244 18 C -0.075 4.075 19 C -0.201 4.201 20 H 0.112 0.888 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.300 -5.777 -3.249 9.144 hybrid contribution -0.401 0.157 -0.129 0.450 sum 5.899 -5.620 -3.378 8.820 Atomic orbital electron populations 1.23380 0.94620 0.97518 1.23874 1.18231 0.92441 0.90476 0.95058 1.19122 1.00785 0.92212 1.35703 0.91118 1.25783 0.94718 1.00321 0.93576 1.69868 1.18299 1.29414 1.25991 0.86548 0.79919 0.83122 0.78671 1.18777 1.20526 1.20735 1.20753 0.90955 0.96934 0.89220 0.96562 1.21485 0.98851 0.96282 0.96968 1.21646 0.98247 0.98696 0.97392 1.21539 0.98104 1.00684 0.94730 1.22096 0.96848 0.90893 0.97790 1.61879 1.29198 1.30259 1.03093 1.22028 0.95368 1.01339 0.88718 1.21790 0.99481 1.01427 0.97450 0.88807 0.94792 0.92258 0.90659 0.92256 0.92684 0.93187 0.91301 0.92754 0.91456 0.96282 0.96621 0.88546 0.93162 0.91980 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -9.78 12.92 29.59 0.38 -9.40 16 2 C 0.04 1.05 2.93 -105.08 -0.31 0.74 16 3 C -0.45 -12.16 8.07 -38.12 -0.31 -12.47 16 4 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 5 C 0.07 1.87 5.15 -17.26 -0.09 1.78 16 6 N -0.81 -22.70 10.87 55.57 0.60 -22.10 16 7 Si 0.89 20.36 29.59 -169.99 -5.03 15.33 16 8 H -0.26 -5.97 7.11 56.52 0.40 -5.56 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.13 2.90 2.04 -68.87 -0.14 2.76 16 12 H 0.02 0.38 7.86 -51.93 -0.41 -0.03 16 13 C -0.10 -2.02 5.25 -26.65 -0.14 -2.16 16 14 C -0.12 -2.01 6.00 -26.61 -0.16 -2.17 16 15 C -0.11 -1.73 6.09 -26.65 -0.16 -1.89 16 16 C 0.05 0.87 5.29 -3.84 -0.02 0.85 16 17 N -0.52 -10.47 4.20 -228.09 -0.96 -11.43 16 18 C 0.05 1.03 5.45 -3.83 -0.02 1.01 16 19 C -0.14 -2.29 9.84 37.16 0.37 -1.92 16 20 H 0.09 2.80 6.15 -52.49 -0.32 2.48 16 21 H 0.03 0.90 7.92 -52.49 -0.42 0.49 16 22 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 23 H 0.07 1.66 7.84 -51.93 -0.41 1.25 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.02 6.21 -51.93 -0.32 0.70 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.10 2.16 6.35 -51.93 -0.33 1.83 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 LS Contribution 273.13 15.07 4.12 4.12 Total: -1.00 -28.28 273.13 -7.75 -36.04 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.89 Total: 0.92 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -0.60 Total: -22.88 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.35 Total: -33.52 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.28 -7.75 -36.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.034 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds