Wall clock time and date at job start Mon Mar 30 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40065 * 120.00326 * 2 1 4 4 H 1.08010 * 120.00056 * 204.74327 * 3 2 1 5 5 C 1.40308 * 120.00012 * 24.74255 * 3 2 1 6 6 N 1.30686 * 119.99903 * 14.73778 * 5 3 2 7 7 Si 1.86799 * 120.00075 * 194.73450 * 5 3 2 8 8 H 1.48505 * 109.47367 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47106 * 119.99966 * 7 5 3 10 10 H 1.48497 * 109.47112 * 240.00153 * 7 5 3 11 11 C 1.50703 * 119.99396 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.46553 * 5.00141 * 11 2 1 13 13 C 1.53036 * 109.46235 * 245.01509 * 11 2 1 14 14 C 1.53118 * 109.27788 * 180.81913 * 13 11 2 15 15 C 1.53113 * 109.16489 * 57.65686 * 14 13 11 16 16 C 1.53040 * 109.27723 * 302.34773 * 15 14 13 17 17 N 1.46829 * 109.52018 * 59.17596 * 16 15 14 18 18 C 1.46893 * 110.98506 * 174.15906 * 17 16 15 19 19 C 1.53000 * 109.47384 * 294.21353 * 18 17 16 20 20 H 1.08000 * 119.99434 * 5.90132 * 1 2 3 21 21 H 1.07994 * 120.00324 * 185.91034 * 1 2 3 22 22 H 0.96999 * 120.00154 * 180.02562 * 6 5 3 23 23 H 1.09005 * 109.50178 * 300.76133 * 13 11 2 24 24 H 1.09000 * 109.50242 * 60.83839 * 13 11 2 25 25 H 1.09002 * 109.52185 * 177.55860 * 14 13 11 26 26 H 1.08998 * 109.52062 * 297.68375 * 14 13 11 27 27 H 1.09000 * 109.50367 * 62.28300 * 15 14 13 28 28 H 1.08995 * 109.50649 * 182.40435 * 15 14 13 29 29 H 1.09001 * 109.46430 * 179.19262 * 16 15 14 30 30 H 1.09003 * 109.46264 * 299.17108 * 16 15 14 31 31 H 1.09003 * 109.47542 * 54.21214 * 18 17 16 32 32 H 1.09006 * 109.47337 * 174.21685 * 18 17 16 33 33 H 1.08991 * 109.47708 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.46668 * 300.00396 * 19 18 17 35 35 H 1.09003 * 109.46987 * 59.99538 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0564 1.2559 -0.3915 5 6 1.4458 2.3723 0.5086 6 7 0.3641 2.2796 1.2360 7 14 2.1868 4.0483 0.1460 8 1 3.4005 3.8819 -0.6935 9 1 1.1946 4.8818 -0.5790 10 1 2.5542 4.7135 1.4218 11 6 2.1037 -1.3052 -0.0006 12 1 1.3986 -2.1315 -0.0905 13 6 2.8864 -1.4427 1.3072 14 6 3.6662 -2.7604 1.2935 15 6 4.5938 -2.7828 0.0755 16 6 3.7616 -2.6064 -1.1966 17 7 3.0357 -1.3316 -1.1352 18 6 2.3352 -1.0637 -2.3982 19 6 3.3596 -0.8523 -3.5148 20 1 -0.5399 0.9304 -0.0962 21 1 -0.5400 -0.9303 0.0963 22 1 -0.0543 3.0811 1.5873 23 1 3.5820 -0.6091 1.4044 24 1 2.1932 -1.4382 2.1484 25 1 4.2592 -2.8422 2.2045 26 1 2.9686 -3.5959 1.2367 27 1 5.3163 -1.9704 0.1533 28 1 5.1204 -3.7363 0.0366 29 1 4.4207 -2.6075 -2.0648 30 1 3.0486 -3.4265 -1.2809 31 1 1.6968 -1.9116 -2.6467 32 1 1.7238 -0.1675 -2.2917 33 1 2.8399 -0.6531 -4.4518 34 1 3.9980 -0.0044 -3.2663 35 1 3.9711 -1.7484 -3.6213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260236114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:45 Heat of formation + Delta-G solvation = -10.659868 kcal Electronic energy + Delta-G solvation = -14607.967786 eV Core-core repulsion = 12411.930003 eV Total energy + Delta-G solvation = -2196.037783 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25498 -36.38671 -35.07598 -33.39371 -30.50232 -30.05355 -27.13090 -25.28941 -23.95299 -22.14852 -20.89262 -20.52721 -17.81336 -17.08094 -16.30252 -15.99892 -15.37757 -15.16806 -14.66324 -14.54678 -14.27469 -13.96195 -13.55704 -13.13718 -12.77383 -12.55140 -12.51249 -12.25263 -12.17961 -12.10611 -11.89238 -11.54255 -11.33443 -11.09975 -10.92546 -10.78908 -9.29091 -9.00670 -8.38581 -6.13687 1.30956 1.40376 1.54547 2.09172 2.32093 3.11853 3.47202 4.03615 4.04677 4.17377 4.30487 4.43238 4.48260 4.63265 4.66642 4.70709 4.76783 4.92886 4.96629 5.07600 5.12027 5.17455 5.29928 5.33397 5.35853 5.41923 5.45818 5.54217 5.64049 6.18887 6.26008 6.44054 6.54101 6.99288 7.28379 7.46383 8.60502 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030143 B = 0.011411 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.680065 B = 2453.251017 C = 2729.804421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.387 4.387 2 C 0.048 3.952 3 C -0.464 4.464 4 H 0.068 0.932 5 C 0.024 3.976 6 N -0.838 5.838 7 Si 0.966 3.034 8 H -0.257 1.257 9 H -0.274 1.274 10 H -0.271 1.271 11 C 0.132 3.868 12 H 0.004 0.996 13 C -0.095 4.095 14 C -0.115 4.115 15 C -0.108 4.108 16 C 0.048 3.952 17 N -0.529 5.529 18 C 0.052 3.948 19 C -0.133 4.133 20 H 0.067 0.933 21 H 0.032 0.968 22 H 0.274 0.726 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 -6.788 -4.115 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.429 4.429 2 C 0.046 3.954 3 C -0.496 4.496 4 H 0.086 0.914 5 C -0.188 4.188 6 N -0.466 5.466 7 Si 0.789 3.211 8 H -0.181 1.181 9 H -0.200 1.200 10 H -0.197 1.197 11 C 0.023 3.977 12 H 0.022 0.978 13 C -0.133 4.133 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.079 4.079 17 N -0.254 5.254 18 C -0.076 4.076 19 C -0.190 4.190 20 H 0.086 0.914 21 H 0.051 0.949 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.662 -6.305 -3.913 11.406 hybrid contribution -1.155 0.317 0.090 1.202 sum 7.506 -5.987 -3.823 10.335 Atomic orbital electron populations 1.23132 0.95415 0.96186 1.28190 1.18582 0.92240 0.92459 0.92139 1.19298 1.00770 0.93190 1.36293 0.91401 1.26699 0.94986 1.04320 0.92781 1.69974 1.19437 1.30971 1.26205 0.85401 0.79164 0.77740 0.78804 1.18083 1.19969 1.19657 1.20593 0.91326 0.94178 0.91556 0.97847 1.21406 0.98291 0.98463 0.95119 1.21600 0.98370 0.95912 0.99366 1.21557 0.97497 1.02531 0.93019 1.22270 0.96932 0.88966 0.99740 1.61882 1.28342 1.32814 1.02355 1.22004 0.96215 0.99538 0.89820 1.21702 0.98625 1.02107 0.96578 0.91445 0.94908 0.91610 0.92474 0.94070 0.90410 0.92490 0.91725 0.89029 0.89123 0.96005 0.96441 0.92564 0.91388 0.92894 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.39 -22.76 12.92 67.08 0.87 -21.89 16 2 C 0.05 2.62 2.93 -20.16 -0.06 2.56 16 3 C -0.46 -25.88 8.07 23.22 0.19 -25.70 16 4 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 5 C 0.02 1.28 5.15 85.37 0.44 1.72 16 6 N -0.84 -48.30 10.87 21.89 0.24 -48.06 16 7 Si 0.97 41.92 29.59 68.60 2.03 43.95 16 8 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 C 0.13 6.01 2.04 44.19 0.09 6.11 16 12 H 0.00 0.17 7.86 -2.39 -0.02 0.15 16 13 C -0.09 -3.91 5.25 30.65 0.16 -3.75 16 14 C -0.11 -3.51 6.00 30.67 0.18 -3.32 16 15 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 16 C 0.05 1.48 5.29 86.33 0.46 1.94 16 17 N -0.53 -20.91 4.20 -875.53 -3.68 -24.58 16 18 C 0.05 2.01 5.45 86.30 0.47 2.48 16 19 C -0.13 -3.93 9.84 71.98 0.71 -3.22 16 20 H 0.07 4.27 6.15 -2.91 -0.02 4.25 16 21 H 0.03 1.86 7.92 -2.91 -0.02 1.83 16 22 H 0.27 14.51 8.29 -92.71 -0.77 13.74 16 23 H 0.06 2.53 7.84 -2.38 -0.02 2.51 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 2.37 6.21 -2.39 -0.01 2.36 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 32 H 0.06 2.60 6.35 -2.38 -0.02 2.59 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.69 6.43 -2.39 -0.02 1.67 16 Total: -1.00 -62.86 273.13 3.31 -59.55 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.03 Total: 14.97 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 3.69 Total: -45.84 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -3.44 Total: -72.64 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -62.86 3.31 -59.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.892 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds