Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.49090 * 110.99912 * 2 1 4 4 C 1.54988 * 106.84375 * 145.35126 * 3 2 1 5 5 H 1.08996 * 110.53606 * 243.78314 * 4 3 2 6 6 C 1.50699 * 110.65220 * 121.07740 * 4 3 2 7 7 H 1.08008 * 119.99760 * 245.39723 * 6 4 3 8 8 C 1.37875 * 120.00162 * 65.39118 * 6 4 3 9 9 N 1.31513 * 119.99983 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00130 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46948 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47181 * 120.00144 * 10 8 6 13 13 H 1.48501 * 109.47084 * 239.99945 * 10 8 6 14 14 C 1.52946 * 103.95999 * 2.40115 * 4 3 2 15 15 H 1.08997 * 110.89779 * 89.72696 * 14 4 3 16 16 C 1.51761 * 116.01277 * 216.55559 * 14 4 3 17 17 C 1.53604 * 107.23759 * 177.35115 * 16 14 4 18 18 C 1.52572 * 111.54413 * 302.19269 * 17 16 14 19 19 C 1.53755 * 111.39744 * 54.76853 * 18 17 16 20 20 C 1.46656 * 111.00238 * 115.49107 * 2 1 3 21 21 H 1.09004 * 110.28617 * 313.99841 * 20 2 1 22 22 H 1.08998 * 109.47072 * 304.50904 * 1 2 3 23 23 H 1.09000 * 109.46921 * 64.51250 * 1 2 3 24 24 H 1.09002 * 109.46881 * 184.50621 * 1 2 3 25 25 H 1.09008 * 109.98392 * 26.00677 * 3 2 1 26 26 H 1.08999 * 110.02259 * 264.71917 * 3 2 1 27 27 H 0.96997 * 119.99914 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.88986 * 296.79171 * 16 14 4 29 29 H 1.08994 * 109.89663 * 57.91480 * 16 14 4 30 30 H 1.08994 * 108.99251 * 181.68653 * 17 16 14 31 31 H 1.09002 * 109.08635 * 62.75594 * 17 16 14 32 32 H 1.09002 * 109.08524 * 294.29192 * 18 17 16 33 33 H 1.09002 * 109.08206 * 175.24130 * 18 17 16 34 34 H 1.08997 * 109.88639 * 61.90041 * 19 18 17 35 35 H 1.09000 * 109.88454 * 182.92597 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0033 1.3919 0.0000 4 6 3.3035 1.3739 0.8434 5 1 3.1925 1.9974 1.7304 6 6 4.4781 1.8342 0.0191 7 1 5.2790 1.1469 -0.2107 8 6 4.5303 3.1326 -0.4418 9 7 3.5553 3.9695 -0.1617 10 14 5.9860 3.7030 -1.4641 11 1 6.9408 2.5787 -1.6364 12 1 5.5088 4.1563 -2.7952 13 1 6.6660 4.8277 -0.7728 14 6 3.4675 -0.0949 1.2373 15 1 4.0502 -0.6349 0.4911 16 6 4.0218 -0.3536 2.6262 17 6 4.0386 -1.8755 2.8333 18 6 2.6469 -2.4788 2.6688 19 6 2.0295 -2.1030 1.3117 20 6 1.9947 -0.5892 1.2359 21 1 1.4671 -0.1867 2.1006 22 1 -0.3633 0.5822 0.8468 23 1 -0.3633 0.4422 -0.9277 24 1 -0.3633 -1.0245 0.0807 25 1 1.2773 2.0696 0.4492 26 1 2.2250 1.7065 -1.0198 27 1 3.5922 4.8830 -0.4856 28 1 5.0345 0.0425 2.7010 29 1 3.3826 0.1157 3.3740 30 1 4.4049 -2.0929 3.8366 31 1 4.7112 -2.3271 2.1040 32 1 2.0025 -2.1115 3.4675 33 1 2.7184 -3.5642 2.7394 34 1 2.6421 -2.5008 0.5027 35 1 1.0177 -2.5023 1.2414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = -34.344422 kcal Electronic energy + Delta-G solvation = -14649.527844 eV Core-core repulsion = 12452.463022 eV Total energy + Delta-G solvation = -2197.064822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94976 -36.68470 -35.21584 -32.91644 -30.59569 -29.29793 -27.36960 -25.20299 -23.42930 -21.83351 -21.12932 -20.73308 -18.24259 -16.70962 -16.33140 -15.86061 -15.62893 -15.23474 -14.63353 -14.43240 -14.17252 -13.86172 -13.54851 -13.08621 -12.92400 -12.73850 -12.58809 -12.30048 -12.09769 -12.02316 -11.74063 -11.65080 -11.33194 -10.97985 -10.87452 -10.53817 -10.41986 -9.26860 -8.14392 -6.23252 1.39125 1.40907 1.52770 2.42862 3.15498 3.19111 3.79524 3.99321 4.11384 4.32734 4.36373 4.46766 4.55230 4.60248 4.62416 4.70738 4.73184 4.78982 4.92510 4.97243 5.08520 5.15730 5.25022 5.32341 5.36435 5.39809 5.48591 5.57444 5.66770 5.76832 5.79847 6.15325 6.39449 6.40419 6.87153 7.44205 8.95635 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.010774 C = 0.008928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.532435 B = 2598.331432 C = 3135.446969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.077 3.923 4 C 0.041 3.959 5 H -0.002 1.002 6 C -0.519 4.519 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.923 5.923 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.280 1.280 14 C -0.077 4.077 15 H 0.057 0.943 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.094 4.094 20 C 0.061 3.939 21 H 0.030 0.970 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.005 0.995 26 H 0.042 0.958 27 H 0.260 0.740 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.905 -11.214 4.540 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C -0.051 4.051 4 C 0.022 3.978 5 H 0.016 0.984 6 C -0.557 4.557 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.563 5.563 10 Si 0.780 3.220 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.206 1.206 14 C -0.096 4.096 15 H 0.075 0.925 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.132 4.132 20 C -0.047 4.047 21 H 0.048 0.952 22 H 0.036 0.964 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.816 -11.339 4.033 12.360 hybrid contribution 0.233 1.650 -0.034 1.666 sum -2.583 -9.689 3.999 10.796 Atomic orbital electron populations 1.22523 0.87948 1.02187 1.00342 1.64700 1.08333 1.16078 1.36050 1.23030 0.96011 0.86374 0.99639 1.19261 0.92723 0.92254 0.93552 0.98430 1.21470 1.05592 0.96112 1.32508 0.92915 1.25785 0.98651 0.96975 0.97393 1.70094 1.33709 1.05549 1.46939 0.85557 0.79744 0.78264 0.78442 1.18993 1.20734 1.20559 1.21796 0.95017 0.95964 0.96827 0.92453 1.21346 1.00256 0.97222 0.95362 1.21508 0.97709 0.93612 1.02108 1.21503 0.95864 1.01230 0.96073 1.21291 1.01210 0.92298 0.98368 1.22414 0.95436 0.96748 0.90134 0.95219 0.96399 0.91865 0.89554 0.97687 0.93907 0.93069 0.92903 0.92961 0.90480 0.92250 0.91992 0.89569 0.91953 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.42 127.69 1.20 1.83 16 2 N -0.53 -21.94 5.49 -885.44 -4.86 -26.80 16 3 C 0.08 3.91 5.67 86.56 0.49 4.41 16 4 C 0.04 2.16 2.50 -10.88 -0.03 2.13 16 5 H 0.00 -0.14 8.05 -2.39 -0.02 -0.16 16 6 C -0.52 -29.50 8.32 25.60 0.21 -29.29 16 7 H 0.05 2.97 7.64 -2.91 -0.02 2.95 16 8 C 0.01 0.59 5.21 84.65 0.44 1.03 16 9 N -0.92 -55.11 12.72 21.45 0.27 -54.83 16 10 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 C -0.08 -3.26 2.02 -10.41 -0.02 -3.28 16 15 H 0.06 2.58 7.71 -2.39 -0.02 2.56 16 16 C -0.10 -3.67 5.61 30.39 0.17 -3.50 16 17 C -0.11 -2.96 5.83 30.66 0.18 -2.78 16 18 C -0.11 -2.56 5.85 30.71 0.18 -2.39 16 19 C -0.09 -2.67 5.89 30.39 0.18 -2.49 16 20 C 0.06 2.28 1.63 45.31 0.07 2.36 16 21 H 0.03 1.14 7.87 -2.38 -0.02 1.12 16 22 H 0.02 0.60 7.96 -2.39 -0.02 0.58 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.09 2.37 7.88 -2.39 -0.02 2.36 16 25 H 0.00 0.25 7.69 -2.38 -0.02 0.23 16 26 H 0.04 2.42 7.57 -2.39 -0.02 2.40 16 27 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.86 8.06 -2.39 -0.02 1.84 16 35 H 0.07 1.78 7.89 -2.39 -0.02 1.76 16 Total: -1.00 -62.51 270.52 1.54 -60.96 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.02 Total: 5.84 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.08 Total: -31.98 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -4.59 Total: -81.64 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.51 1.54 -60.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.618 kcal (2) G-P(sol) polarization free energy of solvation -62.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds