Wall clock time and date at job start Mon Mar 30 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.44314 * 1 3 3 C 1.48873 * 114.69879 * 2 1 4 4 C 1.56067 * 99.70715 * 181.08178 * 3 2 1 5 5 H 1.09240 * 109.96955 * 286.79954 * 4 3 2 6 6 C 1.50109 * 111.17525 * 163.68962 * 4 3 2 7 7 H 1.08004 * 119.99769 * 241.45958 * 6 4 3 8 8 C 1.37876 * 120.00274 * 61.45308 * 6 4 3 9 9 N 1.31518 * 119.99829 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00184 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47077 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47210 * 120.00017 * 10 8 6 13 13 H 1.48500 * 109.46912 * 239.99774 * 10 8 6 14 14 C 1.54835 * 101.16469 * 43.85135 * 4 3 2 15 15 H 1.09657 * 107.66230 * 221.40017 * 14 4 3 16 16 C 1.50273 * 112.42314 * 102.40031 * 14 4 3 17 17 C 1.53233 * 109.89748 * 199.42887 * 16 14 4 18 18 C 1.52447 * 107.21646 * 67.51788 * 17 16 14 19 19 C 1.51354 * 111.88443 * 299.87510 * 18 17 16 20 20 C 1.47075 * 118.33503 * 235.67894 * 2 1 3 21 21 H 1.09665 * 105.19981 * 271.20354 * 20 2 1 22 22 H 1.09007 * 109.47089 * 59.87746 * 1 2 3 23 23 H 1.09004 * 109.47553 * 179.87256 * 1 2 3 24 24 H 1.08997 * 109.47473 * 299.87545 * 1 2 3 25 25 H 1.08536 * 111.43916 * 64.08879 * 3 2 1 26 26 H 1.08545 * 111.36814 * 298.04993 * 3 2 1 27 27 H 0.96995 * 119.99928 * 180.02562 * 9 8 6 28 28 H 1.09073 * 110.36176 * 318.19382 * 16 14 4 29 29 H 1.08880 * 110.11237 * 79.49548 * 16 14 4 30 30 H 1.08978 * 109.59691 * 187.03163 * 17 16 14 31 31 H 1.08934 * 109.66484 * 307.85255 * 17 16 14 32 32 H 1.09118 * 109.32050 * 60.52234 * 18 17 16 33 33 H 1.09184 * 109.20754 * 179.44803 * 18 17 16 34 34 H 1.08821 * 105.00178 * 149.80577 * 19 18 17 35 35 H 1.09424 * 107.04550 * 263.25447 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4431 0.0000 0.0000 3 6 2.0652 1.3525 0.0000 4 6 3.5725 0.9489 -0.0290 5 1 3.8729 0.5581 0.9458 6 6 4.4370 2.1095 -0.4279 7 1 5.0379 2.0525 -1.3235 8 6 4.4638 3.2482 0.3490 9 7 3.7324 3.3174 1.4398 10 14 5.5391 4.6927 -0.1478 11 1 6.2583 4.3651 -1.4049 12 1 4.6896 5.8919 -0.3610 13 1 6.5245 4.9692 0.9282 14 6 3.5606 -0.1784 -1.0903 15 1 4.2155 -0.9810 -0.7305 16 6 4.0767 0.2841 -2.4237 17 6 3.6076 -0.6727 -3.5249 18 6 2.0951 -0.5207 -3.6405 19 6 1.3928 -0.8649 -2.3447 20 6 2.1412 -0.7299 -1.0691 21 1 2.2581 -1.7524 -0.6903 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3634 -1.0277 -0.0023 24 1 -0.3634 0.5119 0.8911 25 1 1.8299 1.8974 0.9087 26 1 1.7986 1.9105 -0.8921 27 1 3.7509 4.1187 1.9861 28 1 3.6894 1.2767 -2.6570 29 1 5.1652 0.3064 -2.4166 30 1 4.0844 -0.4064 -4.4679 31 1 3.8635 -1.6965 -3.2545 32 1 1.8553 0.5095 -3.9086 33 1 1.7265 -1.1835 -4.4260 34 1 0.4989 -0.2444 -2.3354 35 1 1.0593 -1.9038 -2.4268 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:13 Heat of formation + Delta-G solvation = -19.841152 kcal Electronic energy + Delta-G solvation = -14834.322656 eV Core-core repulsion = 12637.886743 eV Total energy + Delta-G solvation = -2196.435913 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.01789 -36.40052 -35.39686 -33.20328 -30.67112 -29.30448 -27.66121 -25.26602 -23.88521 -22.33477 -21.27998 -19.02993 -17.98082 -17.24459 -16.60860 -16.14501 -15.69047 -15.34665 -14.78913 -14.45664 -14.02110 -13.58774 -13.36966 -13.09508 -12.89451 -12.84428 -12.72062 -12.41552 -12.25663 -11.94726 -11.65872 -11.38961 -11.20893 -10.86118 -10.60964 -10.53885 -10.39280 -8.92580 -8.08388 -6.16469 1.41403 1.43609 1.54615 2.45486 3.17839 3.30869 3.74603 3.86665 4.12182 4.23235 4.29170 4.44953 4.54937 4.60950 4.61508 4.79398 4.86223 4.88068 4.96518 5.03013 5.10379 5.22509 5.25435 5.34450 5.41529 5.45742 5.60279 5.67061 5.69616 5.85148 5.93466 6.20953 6.49789 6.72359 6.98408 7.50640 9.01239 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033591 B = 0.012061 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.346043 B = 2320.955455 C = 2887.750354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.580 5.580 3 C 0.081 3.919 4 C 0.053 3.947 5 H -0.007 1.007 6 C -0.520 4.520 7 H 0.068 0.932 8 C 0.010 3.990 9 N -0.922 5.922 10 Si 0.952 3.048 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.284 1.284 14 C -0.078 4.078 15 H 0.042 0.958 16 C -0.089 4.089 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.127 4.127 20 C 0.104 3.896 21 H 0.048 0.952 22 H 0.017 0.983 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.009 0.991 27 H 0.258 0.742 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -7.109 -8.786 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.304 5.304 3 C -0.046 4.046 4 C 0.033 3.967 5 H 0.011 0.989 6 C -0.558 4.558 7 H 0.086 0.914 8 C -0.188 4.188 9 N -0.561 5.561 10 Si 0.778 3.222 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.097 4.097 15 H 0.060 0.940 16 C -0.126 4.126 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.166 4.166 20 C -0.004 4.004 21 H 0.066 0.934 22 H 0.035 0.965 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.945 -7.271 -8.211 11.656 hybrid contribution 0.196 1.438 -0.172 1.462 sum -3.749 -5.833 -8.383 10.879 Atomic orbital electron populations 1.21644 0.86769 1.01893 0.99797 1.61603 1.07275 1.15828 1.45743 1.22924 0.96849 0.87508 0.97306 1.19613 0.91836 0.92528 0.92677 0.98900 1.21461 1.25361 0.99688 1.09333 0.91380 1.25785 0.96892 1.01212 0.94927 1.70113 1.41584 1.28822 1.15615 0.85593 0.78770 0.79407 0.78444 1.18704 1.20958 1.20960 1.21084 0.94373 0.97554 0.96668 0.93982 1.20825 0.99411 0.98824 0.93584 1.21523 0.95688 0.99608 0.98428 1.21108 0.95716 1.01224 0.96441 1.20651 0.99417 1.02274 0.94302 1.20569 0.92973 0.96981 0.89887 0.93361 0.96482 0.90289 0.92107 0.92748 0.97259 0.93267 0.93616 0.92839 0.90596 0.91300 0.93597 0.89919 0.92936 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.59 9.23 128.17 1.18 2.77 16 2 N -0.58 -24.23 4.73 -902.16 -4.27 -28.50 16 3 C 0.08 4.07 5.61 86.98 0.49 4.55 16 4 C 0.05 2.75 2.80 -10.04 -0.03 2.72 16 5 H -0.01 -0.43 8.16 -2.26 -0.02 -0.45 16 6 C -0.52 -28.59 7.81 25.41 0.20 -28.39 16 7 H 0.07 3.60 5.85 -2.91 -0.02 3.58 16 8 C 0.01 0.57 5.34 84.65 0.45 1.02 16 9 N -0.92 -54.50 11.91 21.45 0.26 -54.25 16 10 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 C -0.08 -3.27 2.62 -11.28 -0.03 -3.30 16 15 H 0.04 1.74 8.12 -2.04 -0.02 1.72 16 16 C -0.09 -3.32 3.88 29.79 0.12 -3.21 16 17 C -0.12 -3.21 6.01 30.49 0.18 -3.03 16 18 C -0.11 -2.86 5.76 29.87 0.17 -2.69 16 19 C -0.13 -3.79 5.19 28.64 0.15 -3.65 16 20 C 0.10 3.87 2.77 43.23 0.12 3.99 16 21 H 0.05 1.74 8.00 -2.03 -0.02 1.72 16 22 H 0.02 0.55 6.77 -2.38 -0.02 0.54 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 3.05 7.12 -2.63 -0.02 3.03 16 26 H 0.01 0.48 8.10 -2.63 -0.02 0.45 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.05 1.91 7.13 -2.35 -0.02 1.89 16 29 H 0.05 2.01 7.71 -2.45 -0.02 1.99 16 30 H 0.08 1.83 8.14 -2.40 -0.02 1.81 16 31 H 0.07 1.78 8.13 -2.42 -0.02 1.76 16 32 H 0.05 1.31 8.11 -2.32 -0.02 1.29 16 33 H 0.08 1.73 8.16 -2.29 -0.02 1.71 16 34 H 0.05 1.60 5.96 -2.48 -0.01 1.58 16 35 H 0.07 1.82 8.12 -2.16 -0.02 1.81 16 Total: -1.00 -60.92 262.68 2.06 -58.86 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.04 Total: 7.13 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.00 Total: -29.20 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -4.01 Total: -82.75 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.92 2.06 -58.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.021 kcal (2) G-P(sol) polarization free energy of solvation -60.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds