Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48130 * 110.99860 * 2 1 4 4 C 1.54362 * 106.88775 * 146.51804 * 3 2 1 5 5 H 1.09001 * 110.45394 * 240.54948 * 4 3 2 6 6 C 1.50697 * 110.55488 * 118.05924 * 4 3 2 7 7 H 1.08003 * 119.99760 * 244.96743 * 6 4 3 8 8 C 1.37873 * 120.00115 * 64.96351 * 6 4 3 9 9 N 1.31513 * 119.99935 * 0.02562 * 8 6 4 10 10 Si 1.86807 * 120.00115 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47115 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46997 * 120.00291 * 10 8 6 13 13 H 1.48493 * 109.47403 * 240.00508 * 10 8 6 14 14 C 1.53756 * 104.39119 * 359.28004 * 4 3 2 15 15 H 1.08996 * 109.21669 * 92.15216 * 14 4 3 16 16 C 1.51136 * 112.60304 * 213.10147 * 14 4 3 17 17 C 1.52846 * 111.38875 * 64.36109 * 16 14 4 18 18 C 1.53274 * 108.32635 * 59.11484 * 17 16 14 19 19 C 1.52640 * 108.57407 * 296.46144 * 18 17 16 20 20 C 1.49542 * 110.99748 * 116.76645 * 2 1 3 21 21 H 1.08994 * 112.95905 * 78.01703 * 20 2 1 22 22 H 1.08997 * 109.47045 * 303.23329 * 1 2 3 23 23 H 1.09002 * 109.47104 * 63.23145 * 1 2 3 24 24 H 1.08997 * 109.46936 * 183.23177 * 1 2 3 25 25 H 1.09000 * 109.97488 * 27.16290 * 3 2 1 26 26 H 1.08998 * 110.01040 * 265.89813 * 3 2 1 27 27 H 0.97006 * 119.99681 * 180.02562 * 9 8 6 28 28 H 1.08996 * 109.14258 * 303.85226 * 16 14 4 29 29 H 1.08994 * 109.07350 * 184.83219 * 16 14 4 30 30 H 1.09002 * 109.70200 * 299.39260 * 17 16 14 31 31 H 1.09000 * 109.69728 * 178.83381 * 17 16 14 32 32 H 1.09004 * 109.62018 * 56.18214 * 18 17 16 33 33 H 1.09000 * 109.62104 * 176.73452 * 18 17 16 34 34 H 1.09003 * 109.20820 * 182.48500 * 19 18 17 35 35 H 1.09007 * 109.19948 * 301.78802 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9999 1.3829 0.0000 4 6 3.3107 1.3601 0.8149 5 1 3.2347 2.0224 1.6772 6 6 4.4788 1.7567 -0.0508 7 1 5.2593 1.0416 -0.2652 8 6 4.5510 3.0322 -0.5690 9 7 3.6008 3.9030 -0.3076 10 14 5.9994 3.5240 -1.6415 11 1 6.9248 2.3713 -1.7825 12 1 5.5070 3.9300 -2.9824 13 1 6.7173 4.6616 -1.0125 14 6 3.4518 -0.1015 1.2708 15 1 4.0459 -0.6497 0.5397 16 6 4.1110 -0.2264 2.6251 17 6 3.2549 0.4059 3.7222 18 6 1.8947 -0.3002 3.7392 19 6 1.1965 -0.0429 2.4064 20 6 2.0049 -0.6287 1.2465 21 1 1.9627 -1.7177 1.2255 22 1 -0.3633 0.5632 0.8596 23 1 -0.3633 0.4629 -0.9175 24 1 -0.3633 -1.0260 0.0579 25 1 1.2824 2.0572 0.4677 26 1 2.2019 1.7049 -1.0216 27 1 3.6515 4.8004 -0.6725 28 1 5.0803 0.2713 2.5981 29 1 4.2597 -1.2819 2.8528 30 1 3.1157 1.4668 3.5140 31 1 3.7452 0.2823 4.6878 32 1 2.0403 -1.3719 3.8751 33 1 1.2870 0.0954 4.5531 34 1 0.2089 -0.5038 2.4240 35 1 1.0874 1.0319 2.2606 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260313908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -10.429499 kcal Electronic energy + Delta-G solvation = -14903.204198 eV Core-core repulsion = 12707.176405 eV Total energy + Delta-G solvation = -2196.027793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64299 -34.75544 -33.31541 -31.13024 -28.72041 -27.83037 -25.52293 -23.53468 -22.04273 -21.15324 -19.37054 -17.86264 -16.29380 -15.16661 -14.69429 -14.31183 -13.99852 -13.72640 -13.25147 -12.75070 -12.32486 -12.06847 -11.59230 -11.52277 -11.22521 -11.11223 -10.92022 -10.65419 -10.53198 -10.52183 -10.17842 -9.97325 -9.50787 -9.43815 -8.88609 -8.70333 -8.37790 -7.42926 -5.98598 -3.99937 3.32498 3.40683 3.45004 4.47742 4.85104 5.25119 5.28440 5.34777 5.53969 5.74387 5.82298 5.90772 5.96281 6.01578 6.09802 6.15065 6.16234 6.31004 6.36813 6.48922 6.61125 6.65347 6.70713 6.74903 6.88671 7.07608 7.10153 7.33467 7.53198 7.77126 7.90092 8.01600 8.11643 8.51409 9.03157 9.63725 11.11434 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035407 B = 0.011669 C = 0.009941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.621145 B = 2398.991991 C = 2815.869205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.063 3.937 4 C 0.053 3.947 5 H 0.035 0.965 6 C -0.503 4.503 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.893 5.893 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.286 1.286 14 C -0.083 4.083 15 H 0.066 0.934 16 C -0.099 4.099 17 C -0.120 4.120 18 C -0.111 4.111 19 C -0.142 4.142 20 C 0.069 3.931 21 H 0.077 0.923 22 H 0.025 0.975 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.018 0.982 26 H 0.076 0.924 27 H 0.259 0.741 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 -6.782 5.434 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.250 5.250 3 C -0.064 4.064 4 C 0.034 3.966 5 H 0.053 0.947 6 C -0.541 4.541 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.102 4.102 15 H 0.084 0.916 16 C -0.137 4.137 17 C -0.157 4.157 18 C -0.149 4.149 19 C -0.181 4.181 20 C -0.039 4.039 21 H 0.096 0.904 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.653 -6.871 4.883 9.187 hybrid contribution 0.292 0.914 0.016 0.959 sum -3.362 -5.957 4.899 8.413 Atomic orbital electron populations 1.22470 0.90467 1.00228 1.00191 1.65278 1.05996 1.18650 1.35119 1.23084 0.96472 0.84743 1.02147 1.19405 0.92648 0.89776 0.94807 0.94716 1.21219 1.06270 0.96713 1.29940 0.92520 1.24982 0.96024 0.96621 0.96467 1.69977 1.32928 1.05083 1.45221 0.86586 0.82911 0.78433 0.80392 1.19763 1.21126 1.21192 1.21410 0.93107 1.00007 0.95649 0.91562 1.20953 0.99206 0.98960 0.94590 1.21590 0.95362 1.00844 0.97930 1.21441 0.96799 0.99917 0.96790 1.22122 0.98358 1.01910 0.95696 1.22827 0.95559 0.97562 0.87947 0.90442 0.95678 0.92393 0.92815 0.96395 0.90559 0.93169 0.91756 0.93711 0.91262 0.93006 0.92589 0.93004 0.93140 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.66 60.07 0.52 0.79 16 2 N -0.53 -10.96 5.56 -230.12 -1.28 -12.24 16 3 C 0.06 1.51 4.85 -2.43 -0.01 1.50 16 4 C 0.05 1.30 1.84 -90.67 -0.17 1.13 16 5 H 0.03 0.93 6.39 -51.93 -0.33 0.60 16 6 C -0.50 -13.79 8.31 -34.44 -0.29 -14.07 16 7 H 0.06 1.55 7.57 -52.48 -0.40 1.16 16 8 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 9 N -0.89 -25.71 12.63 55.43 0.70 -25.01 16 10 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.08 -1.72 2.46 -90.64 -0.22 -1.94 16 15 H 0.07 1.47 7.67 -51.93 -0.40 1.07 16 16 C -0.10 -1.78 5.38 -27.75 -0.15 -1.93 16 17 C -0.12 -1.98 5.80 -26.67 -0.15 -2.13 16 18 C -0.11 -1.68 5.93 -26.77 -0.16 -1.83 16 19 C -0.14 -2.41 3.56 -26.90 -0.10 -2.51 16 20 C 0.07 1.30 3.67 -65.69 -0.24 1.06 16 21 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 22 H 0.02 0.42 5.97 -51.93 -0.31 0.11 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.44 7.05 -51.93 -0.37 0.07 16 26 H 0.08 2.08 7.42 -51.93 -0.39 1.69 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.30 6.64 -51.93 -0.34 0.95 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.78 7.16 -51.93 -0.37 0.40 16 35 H 0.07 1.31 5.95 -51.93 -0.31 1.00 16 LS Contribution 259.90 15.07 3.92 3.92 Total: -1.00 -28.06 259.90 -8.47 -36.54 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.73 Total: -1.29 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.06 Total: -18.37 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.58 Total: -37.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.06 -8.47 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.109 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds