Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48130 * 110.99860 * 2 1 4 4 C 1.54362 * 106.88775 * 146.51804 * 3 2 1 5 5 H 1.09001 * 110.45394 * 240.54948 * 4 3 2 6 6 C 1.50697 * 110.55488 * 118.05924 * 4 3 2 7 7 H 1.08003 * 119.99760 * 244.96743 * 6 4 3 8 8 C 1.37873 * 120.00115 * 64.96351 * 6 4 3 9 9 N 1.31513 * 119.99935 * 0.02562 * 8 6 4 10 10 Si 1.86807 * 120.00115 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47115 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46997 * 120.00291 * 10 8 6 13 13 H 1.48493 * 109.47403 * 240.00508 * 10 8 6 14 14 C 1.53756 * 104.39119 * 359.28004 * 4 3 2 15 15 H 1.08996 * 109.21669 * 92.15216 * 14 4 3 16 16 C 1.51136 * 112.60304 * 213.10147 * 14 4 3 17 17 C 1.52846 * 111.38875 * 64.36109 * 16 14 4 18 18 C 1.53274 * 108.32635 * 59.11484 * 17 16 14 19 19 C 1.52640 * 108.57407 * 296.46144 * 18 17 16 20 20 C 1.49542 * 110.99748 * 116.76645 * 2 1 3 21 21 H 1.08994 * 112.95905 * 78.01703 * 20 2 1 22 22 H 1.08997 * 109.47045 * 303.23329 * 1 2 3 23 23 H 1.09002 * 109.47104 * 63.23145 * 1 2 3 24 24 H 1.08997 * 109.46936 * 183.23177 * 1 2 3 25 25 H 1.09000 * 109.97488 * 27.16290 * 3 2 1 26 26 H 1.08998 * 110.01040 * 265.89813 * 3 2 1 27 27 H 0.97006 * 119.99681 * 180.02562 * 9 8 6 28 28 H 1.08996 * 109.14258 * 303.85226 * 16 14 4 29 29 H 1.08994 * 109.07350 * 184.83219 * 16 14 4 30 30 H 1.09002 * 109.70200 * 299.39260 * 17 16 14 31 31 H 1.09000 * 109.69728 * 178.83381 * 17 16 14 32 32 H 1.09004 * 109.62018 * 56.18214 * 18 17 16 33 33 H 1.09000 * 109.62104 * 176.73452 * 18 17 16 34 34 H 1.09003 * 109.20820 * 182.48500 * 19 18 17 35 35 H 1.09007 * 109.19948 * 301.78802 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9999 1.3829 0.0000 4 6 3.3107 1.3601 0.8149 5 1 3.2347 2.0224 1.6772 6 6 4.4788 1.7567 -0.0508 7 1 5.2593 1.0416 -0.2652 8 6 4.5510 3.0322 -0.5690 9 7 3.6008 3.9030 -0.3076 10 14 5.9994 3.5240 -1.6415 11 1 6.9248 2.3713 -1.7825 12 1 5.5070 3.9300 -2.9824 13 1 6.7173 4.6616 -1.0125 14 6 3.4518 -0.1015 1.2708 15 1 4.0459 -0.6497 0.5397 16 6 4.1110 -0.2264 2.6251 17 6 3.2549 0.4059 3.7222 18 6 1.8947 -0.3002 3.7392 19 6 1.1965 -0.0429 2.4064 20 6 2.0049 -0.6287 1.2465 21 1 1.9627 -1.7177 1.2255 22 1 -0.3633 0.5632 0.8596 23 1 -0.3633 0.4629 -0.9175 24 1 -0.3633 -1.0260 0.0579 25 1 1.2824 2.0572 0.4677 26 1 2.2019 1.7049 -1.0216 27 1 3.6515 4.8004 -0.6725 28 1 5.0803 0.2713 2.5981 29 1 4.2597 -1.2819 2.8528 30 1 3.1157 1.4668 3.5140 31 1 3.7452 0.2823 4.6878 32 1 2.0403 -1.3719 3.8751 33 1 1.2870 0.0954 4.5531 34 1 0.2089 -0.5038 2.4240 35 1 1.0874 1.0319 2.2606 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -28.141505 kcal Electronic energy + Delta-G solvation = -14903.972248 eV Core-core repulsion = 12707.176405 eV Total energy + Delta-G solvation = -2196.795843 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.23930 -36.23633 -35.28062 -32.89187 -30.16913 -29.56706 -27.35544 -25.29945 -23.57716 -22.62229 -21.10382 -19.46538 -18.34362 -16.67405 -16.56073 -16.06493 -15.66230 -15.13208 -14.78137 -14.29325 -14.06236 -13.60852 -13.27526 -13.13149 -12.95212 -12.72147 -12.55691 -12.42320 -12.34482 -12.07322 -11.82879 -11.52607 -11.17202 -11.04667 -10.63966 -10.56407 -10.49940 -9.08697 -8.13509 -6.21562 1.38237 1.40259 1.51734 2.42996 3.17867 3.27845 3.85881 3.90700 4.17049 4.31143 4.41364 4.47563 4.55121 4.55695 4.68258 4.68786 4.76718 4.81799 4.96881 5.01462 5.08994 5.14594 5.20994 5.31786 5.38450 5.43035 5.49723 5.63642 5.70562 5.80708 5.90005 6.19533 6.38011 6.44827 6.89908 7.45529 8.96248 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035407 B = 0.011669 C = 0.009941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.621145 B = 2398.991991 C = 2815.869205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.541 5.541 3 C 0.082 3.918 4 C 0.050 3.950 5 H 0.006 0.994 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.923 5.923 10 Si 0.951 3.049 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.280 1.280 14 C -0.080 4.080 15 H 0.047 0.953 16 C -0.097 4.097 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.137 4.137 20 C 0.073 3.927 21 H 0.105 0.895 22 H 0.029 0.971 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.001 0.999 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -8.731 6.412 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.265 5.265 3 C -0.046 4.046 4 C 0.031 3.969 5 H 0.024 0.976 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.777 3.223 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.205 1.205 14 C -0.099 4.099 15 H 0.066 0.934 16 C -0.135 4.135 17 C -0.156 4.156 18 C -0.143 4.143 19 C -0.176 4.176 20 C -0.034 4.034 21 H 0.123 0.877 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.103 0.897 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.952 -8.835 5.868 11.318 hybrid contribution 0.367 1.508 -0.297 1.580 sum -3.585 -7.326 5.570 9.877 Atomic orbital electron populations 1.22536 0.88122 1.02260 1.00336 1.65182 1.08334 1.16036 1.36901 1.22621 0.96133 0.86707 0.99144 1.19303 0.92118 0.92024 0.93477 0.97554 1.21558 1.07033 0.96902 1.30399 0.93155 1.25740 0.98543 0.96691 0.97738 1.70095 1.34602 1.05338 1.46256 0.85604 0.79869 0.78219 0.78595 1.19080 1.20845 1.20547 1.21351 0.94897 0.96808 0.96801 0.93419 1.20932 0.98214 1.00847 0.93522 1.21566 0.96648 0.98842 0.98506 1.21434 0.95485 1.01338 0.96005 1.22052 0.99576 0.99801 0.96149 1.22920 0.93923 0.98795 0.87764 0.87666 0.95248 0.92647 0.89661 0.98108 0.94616 0.93155 0.93683 0.90528 0.94668 0.90350 0.89957 0.91121 0.90670 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.66 127.69 1.11 1.63 16 2 N -0.54 -22.21 5.56 -881.97 -4.91 -27.11 16 3 C 0.08 4.12 4.85 86.53 0.42 4.54 16 4 C 0.05 2.55 1.84 -10.82 -0.02 2.53 16 5 H 0.01 0.36 6.39 -2.39 -0.02 0.35 16 6 C -0.52 -29.56 8.31 25.60 0.21 -29.35 16 7 H 0.05 2.84 7.57 -2.91 -0.02 2.82 16 8 C 0.01 0.63 5.15 84.65 0.44 1.07 16 9 N -0.92 -55.14 12.63 21.45 0.27 -54.87 16 10 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C -0.08 -3.29 2.46 -10.80 -0.03 -3.32 16 15 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 16 C -0.10 -3.37 5.38 29.93 0.16 -3.21 16 17 C -0.12 -3.70 5.80 30.63 0.18 -3.52 16 18 C -0.10 -2.77 5.93 30.57 0.18 -2.59 16 19 C -0.14 -4.33 3.56 30.49 0.11 -4.22 16 20 C 0.07 2.61 3.67 44.76 0.16 2.78 16 21 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 22 H 0.03 0.95 5.97 -2.39 -0.01 0.93 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.00 0.03 7.05 -2.39 -0.02 0.01 16 26 H 0.04 2.04 7.42 -2.39 -0.02 2.02 16 27 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.33 6.64 -2.39 -0.02 1.31 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.02 7.16 -2.39 -0.02 2.00 16 35 H 0.03 1.32 5.95 -2.38 -0.01 1.31 16 Total: -1.00 -62.72 259.90 1.36 -61.36 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.04 Total: 7.28 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 2.92 Total: -33.66 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -4.63 Total: -81.98 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -62.72 1.36 -61.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.220 kcal (2) G-P(sol) polarization free energy of solvation -62.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds