Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49736 * 111.00025 * 2 1 4 4 C 1.48163 * 109.02948 * 197.29058 * 3 2 1 5 5 C 1.51882 * 115.17697 * 297.07046 * 4 3 2 6 6 C 1.51488 * 110.52407 * 85.04999 * 5 4 3 7 7 C 1.50697 * 109.50834 * 150.09839 * 6 5 4 8 8 N 1.27944 * 119.99711 * 95.00055 * 7 6 5 9 9 Si 1.86799 * 120.00126 * 275.00133 * 7 6 5 10 10 H 1.48496 * 109.47247 * 90.00289 * 9 7 6 11 11 H 1.48506 * 109.46974 * 209.99791 * 9 7 6 12 12 H 1.48498 * 109.47113 * 330.00081 * 9 7 6 13 13 C 1.54051 * 109.24745 * 270.07777 * 6 5 4 14 14 H 1.08998 * 110.70218 * 165.96456 * 13 6 5 15 15 C 1.54987 * 109.04017 * 288.14395 * 13 6 5 16 16 C 1.54567 * 105.21800 * 151.25110 * 15 13 6 17 17 C 1.54848 * 106.70573 * 337.55826 * 16 15 13 18 18 C 1.39450 * 111.00211 * 125.17641 * 2 1 3 19 19 H 1.09001 * 94.00484 * 239.05169 * 18 2 1 20 20 H 1.09002 * 109.47401 * 56.04410 * 1 2 3 21 21 H 1.09001 * 109.46874 * 296.04423 * 1 2 3 22 22 H 1.09004 * 109.46970 * 176.04556 * 1 2 3 23 23 H 1.09008 * 109.54096 * 317.15864 * 3 2 1 24 24 H 1.09002 * 109.54351 * 77.41833 * 3 2 1 25 25 H 1.09004 * 108.34380 * 58.55123 * 4 3 2 26 26 H 1.09006 * 108.34297 * 175.59454 * 4 3 2 27 27 H 1.09002 * 109.26775 * 205.31781 * 5 4 3 28 28 H 1.08999 * 109.26780 * 324.78103 * 5 4 3 29 29 H 1.08995 * 109.50614 * 30.01128 * 6 5 4 30 30 H 0.97006 * 120.00024 * 180.02562 * 8 7 6 31 31 H 1.08999 * 110.29852 * 270.18388 * 15 13 6 32 32 H 1.08999 * 110.29668 * 32.21910 * 15 13 6 33 33 H 1.08997 * 110.01656 * 96.87457 * 16 15 13 34 34 H 1.08999 * 110.01113 * 218.24923 * 16 15 13 35 35 H 1.09002 * 110.26233 * 122.49910 * 17 16 15 36 36 H 1.09008 * 110.26159 * 244.44456 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0056 1.3979 0.0000 4 6 3.4273 1.3696 -0.4163 5 6 4.3568 0.6051 0.5102 6 6 4.3481 -0.8713 0.1711 7 6 5.6872 -1.4735 0.5106 8 7 5.8628 -2.0466 1.6409 9 14 7.0907 -1.3830 -0.7189 10 1 7.8701 -0.1400 -0.4897 11 1 7.9770 -2.5619 -0.5459 12 1 6.5407 -1.3752 -2.0982 13 6 3.2457 -1.5733 0.9867 14 1 3.0493 -2.5698 0.5914 15 6 3.6840 -1.6459 2.4716 16 6 2.3687 -1.6401 3.2835 17 6 1.2875 -1.0051 2.3750 18 6 1.9688 -0.7500 1.0641 19 1 2.5181 0.0868 1.4956 20 1 -0.3634 0.5740 -0.8524 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 -1.0253 -0.0709 23 1 1.4331 2.0082 -0.6985 24 1 1.9274 1.8185 1.0026 25 1 3.4855 0.9205 -1.4078 26 1 3.7841 2.3971 -0.4886 27 1 5.3699 0.9927 0.4033 28 1 4.0278 0.7394 1.5406 29 1 4.1509 -0.9992 -0.8932 30 1 6.7249 -2.4339 1.8596 31 1 4.2389 -2.5654 2.6575 32 1 4.2926 -0.7791 2.7290 33 1 2.0859 -2.6603 3.5428 34 1 2.4917 -1.0453 4.1886 35 1 0.4550 -1.6956 2.2396 36 1 0.9341 -0.0686 2.8067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260318066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = 72.414028 kcal Electronic energy + Delta-G solvation = -15540.623727 eV Core-core repulsion = 13334.532560 eV Total energy + Delta-G solvation = -2206.091168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.155 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12400 -37.74706 -36.50018 -34.60537 -31.33081 -28.84161 -28.53990 -25.75391 -25.06773 -22.19587 -21.57907 -20.30782 -19.25355 -18.00192 -17.20519 -16.56407 -15.90666 -15.73368 -14.92687 -14.83264 -14.62346 -14.30910 -13.81374 -13.68608 -13.34699 -13.23879 -12.79869 -12.62301 -12.48663 -12.14863 -12.09043 -11.89744 -11.71680 -11.57606 -11.45093 -11.19364 -10.78777 -10.24325 -9.47369 -8.89265 0.82157 1.07469 1.38796 1.70975 1.84556 2.49959 3.50078 3.59786 3.79927 3.94185 4.09683 4.14360 4.23079 4.32004 4.38354 4.50724 4.54508 4.60922 4.68625 4.74014 4.87495 4.90911 4.98222 5.00726 5.08405 5.09014 5.11414 5.23375 5.27159 5.30767 5.36530 5.45177 5.46567 5.73796 5.84168 6.15781 6.64494 6.91503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.515 5.515 3 C 0.061 3.939 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.049 4.049 7 C 0.001 3.999 8 N -0.621 5.621 9 Si 0.926 3.074 10 H -0.240 1.240 11 H -0.248 1.248 12 H -0.233 1.233 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.098 4.098 16 C -0.133 4.133 17 C -0.101 4.101 18 C 0.030 3.970 19 H 0.024 0.976 20 H 0.064 0.936 21 H 0.025 0.975 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.328 0.672 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 1.216 -0.736 1.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.237 5.237 3 C -0.065 4.065 4 C -0.161 4.161 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.248 4.248 8 N -0.233 5.233 9 Si 0.742 3.258 10 H -0.163 1.163 11 H -0.171 1.171 12 H -0.155 1.155 13 C -0.061 4.061 14 H 0.087 0.913 15 C -0.136 4.136 16 C -0.172 4.172 17 C -0.140 4.140 18 C -0.081 4.081 19 H 0.042 0.958 20 H 0.083 0.917 21 H 0.043 0.957 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.772 0.923 -0.899 1.502 hybrid contribution 0.289 0.418 0.614 0.797 sum 1.061 1.341 -0.285 1.734 Atomic orbital electron populations 1.22319 0.87089 1.02402 1.00167 1.59385 1.07846 1.11183 1.45304 1.22081 0.96026 0.88103 1.00270 1.20584 0.94097 1.00663 1.00745 1.21084 0.99669 0.93629 1.00557 1.20485 0.90604 0.94579 1.01182 1.30374 1.03580 0.92723 0.98108 1.68789 1.28234 1.07552 1.18733 0.85824 0.77457 0.82200 0.80313 1.16338 1.17099 1.15499 1.21362 0.90463 0.98305 0.95937 0.91256 1.22693 0.94430 1.04093 0.92376 1.22498 0.95881 1.00666 0.98132 1.21333 0.98784 1.00501 0.93378 1.19924 0.96696 1.01972 0.89506 0.95783 0.91692 0.95674 0.91183 0.90099 0.94416 0.90666 0.91427 0.91569 0.90959 0.88614 0.85473 0.88758 0.91784 0.91702 0.92202 0.92363 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 9.01 60.07 0.54 0.55 16 2 N -0.52 -0.60 4.70 -243.29 -1.14 -1.74 16 3 C 0.06 -0.01 5.28 -4.59 -0.02 -0.03 16 4 C -0.12 0.10 5.27 -29.65 -0.16 -0.06 16 5 C -0.11 0.04 4.66 -28.06 -0.13 -0.09 16 6 C -0.05 0.00 1.94 -91.99 -0.18 -0.18 16 7 C 0.00 0.00 4.62 -13.90 -0.06 -0.06 16 8 N -0.62 -0.13 9.06 56.23 0.51 0.37 16 9 Si 0.93 -0.94 29.08 -169.99 -4.94 -5.89 16 10 H -0.24 0.08 7.11 56.52 0.40 0.48 16 11 H -0.25 0.03 7.11 56.52 0.40 0.43 16 12 H -0.23 0.12 7.11 56.52 0.40 0.52 16 13 C -0.04 -0.05 3.10 -89.47 -0.28 -0.33 16 14 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 15 C -0.10 -0.12 3.94 -24.86 -0.10 -0.22 16 16 C -0.13 -0.14 6.85 -24.93 -0.17 -0.31 16 17 C -0.10 -0.12 5.19 -27.29 -0.14 -0.26 16 18 C 0.03 0.04 3.24 -73.52 -0.24 -0.20 16 19 H 0.02 0.04 2.08 -51.93 -0.11 -0.07 16 20 H 0.06 -0.03 8.03 -51.93 -0.42 -0.44 16 21 H 0.02 0.01 7.60 -51.93 -0.39 -0.39 16 22 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 23 H 0.08 -0.07 7.93 -51.92 -0.41 -0.48 16 24 H 0.04 0.01 7.61 -51.93 -0.40 -0.38 16 25 H 0.07 -0.05 7.47 -51.93 -0.39 -0.43 16 26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.07 -0.08 7.40 -51.93 -0.38 -0.46 16 28 H 0.07 0.05 5.07 -51.93 -0.26 -0.22 16 29 H 0.10 -0.02 7.15 -51.93 -0.37 -0.40 16 30 H 0.33 -0.36 8.23 -40.82 -0.34 -0.70 16 31 H 0.09 0.17 6.46 -51.93 -0.34 -0.16 16 32 H 0.06 0.12 6.04 -51.93 -0.31 -0.20 16 33 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 35 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.06 0.07 8.07 -51.92 -0.42 -0.35 16 LS Contribution 255.26 15.07 3.85 3.85 Total: 0.00 -1.58 255.26 -8.54 -10.12 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -5.87 Total: -5.53 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.94 Total: -1.18 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -0.63 Total: -1.36 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -4.94 Total: -5.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -1.58 -8.54 -10.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260318066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.531 kcal (2) G-P(sol) polarization free energy of solvation -1.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds