Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49736 * 111.00025 * 2 1 4 4 C 1.48163 * 109.02948 * 197.29058 * 3 2 1 5 5 C 1.51882 * 115.17697 * 297.07046 * 4 3 2 6 6 C 1.51488 * 110.52407 * 85.04999 * 5 4 3 7 7 C 1.50697 * 109.50834 * 150.09839 * 6 5 4 8 8 N 1.27944 * 119.99711 * 95.00055 * 7 6 5 9 9 Si 1.86799 * 120.00126 * 275.00133 * 7 6 5 10 10 H 1.48496 * 109.47247 * 90.00289 * 9 7 6 11 11 H 1.48506 * 109.46974 * 209.99791 * 9 7 6 12 12 H 1.48498 * 109.47113 * 330.00081 * 9 7 6 13 13 C 1.54051 * 109.24745 * 270.07777 * 6 5 4 14 14 H 1.08998 * 110.70218 * 165.96456 * 13 6 5 15 15 C 1.54987 * 109.04017 * 288.14395 * 13 6 5 16 16 C 1.54567 * 105.21800 * 151.25110 * 15 13 6 17 17 C 1.54848 * 106.70573 * 337.55826 * 16 15 13 18 18 C 1.39450 * 111.00211 * 125.17641 * 2 1 3 19 19 H 1.09001 * 94.00484 * 239.05169 * 18 2 1 20 20 H 1.09002 * 109.47401 * 56.04410 * 1 2 3 21 21 H 1.09001 * 109.46874 * 296.04423 * 1 2 3 22 22 H 1.09004 * 109.46970 * 176.04556 * 1 2 3 23 23 H 1.09008 * 109.54096 * 317.15864 * 3 2 1 24 24 H 1.09002 * 109.54351 * 77.41833 * 3 2 1 25 25 H 1.09004 * 108.34380 * 58.55123 * 4 3 2 26 26 H 1.09006 * 108.34297 * 175.59454 * 4 3 2 27 27 H 1.09002 * 109.26775 * 205.31781 * 5 4 3 28 28 H 1.08999 * 109.26780 * 324.78103 * 5 4 3 29 29 H 1.08995 * 109.50614 * 30.01128 * 6 5 4 30 30 H 0.97006 * 120.00024 * 180.02562 * 8 7 6 31 31 H 1.08999 * 110.29852 * 270.18388 * 15 13 6 32 32 H 1.08999 * 110.29668 * 32.21910 * 15 13 6 33 33 H 1.08997 * 110.01656 * 96.87457 * 16 15 13 34 34 H 1.08999 * 110.01113 * 218.24923 * 16 15 13 35 35 H 1.09002 * 110.26233 * 122.49910 * 17 16 15 36 36 H 1.09008 * 110.26159 * 244.44456 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0056 1.3979 0.0000 4 6 3.4273 1.3696 -0.4163 5 6 4.3568 0.6051 0.5102 6 6 4.3481 -0.8713 0.1711 7 6 5.6872 -1.4735 0.5106 8 7 5.8628 -2.0466 1.6409 9 14 7.0907 -1.3830 -0.7189 10 1 7.8701 -0.1400 -0.4897 11 1 7.9770 -2.5619 -0.5459 12 1 6.5407 -1.3752 -2.0982 13 6 3.2457 -1.5733 0.9867 14 1 3.0493 -2.5698 0.5914 15 6 3.6840 -1.6459 2.4716 16 6 2.3687 -1.6401 3.2835 17 6 1.2875 -1.0051 2.3750 18 6 1.9688 -0.7500 1.0641 19 1 2.5181 0.0868 1.4956 20 1 -0.3634 0.5740 -0.8524 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 -1.0253 -0.0709 23 1 1.4331 2.0082 -0.6985 24 1 1.9274 1.8185 1.0026 25 1 3.4855 0.9205 -1.4078 26 1 3.7841 2.3971 -0.4886 27 1 5.3699 0.9927 0.4033 28 1 4.0278 0.7394 1.5406 29 1 4.1509 -0.9992 -0.8932 30 1 6.7249 -2.4339 1.8596 31 1 4.2389 -2.5654 2.6575 32 1 4.2926 -0.7791 2.7290 33 1 2.0859 -2.6603 3.5428 34 1 2.4917 -1.0453 4.1886 35 1 0.4550 -1.6956 2.2396 36 1 0.9341 -0.0686 2.8067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260318066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = 81.163436 kcal Electronic energy + Delta-G solvation = -15540.244325 eV Core-core repulsion = 13334.532560 eV Total energy + Delta-G solvation = -2205.711765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.155 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.17355 -37.76195 -36.54087 -34.60313 -31.35294 -28.92697 -28.58564 -25.76303 -25.11193 -22.20963 -21.60996 -20.37024 -19.30269 -18.01118 -17.24711 -16.58184 -15.94402 -15.76223 -14.92498 -14.83962 -14.64749 -14.31394 -13.84226 -13.71909 -13.40196 -13.25472 -12.81158 -12.64383 -12.48274 -12.18252 -12.10956 -11.89726 -11.71020 -11.58357 -11.49195 -11.24253 -10.84241 -10.32243 -9.46503 -8.95869 0.86044 1.13105 1.46156 1.77176 1.89492 2.45500 3.49075 3.56423 3.81239 3.86892 4.06822 4.11945 4.23087 4.28149 4.36288 4.48344 4.52673 4.58925 4.64026 4.69288 4.80874 4.89135 4.90984 4.99987 5.03880 5.06198 5.14451 5.20070 5.22716 5.26311 5.34051 5.39358 5.46298 5.62694 5.72020 6.13337 6.57816 6.97815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.525 5.525 3 C 0.061 3.939 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.051 4.051 7 C 0.000 4.000 8 N -0.636 5.636 9 Si 0.966 3.034 10 H -0.247 1.247 11 H -0.261 1.261 12 H -0.238 1.238 13 C -0.042 4.042 14 H 0.058 0.942 15 C -0.090 4.090 16 C -0.133 4.133 17 C -0.099 4.099 18 C 0.028 3.972 19 H 0.022 0.978 20 H 0.073 0.927 21 H 0.023 0.977 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.335 0.665 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 1.655 -1.184 2.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.247 5.247 3 C -0.065 4.065 4 C -0.160 4.160 5 C -0.147 4.147 6 C -0.070 4.070 7 C -0.248 4.248 8 N -0.249 5.249 9 Si 0.783 3.217 10 H -0.170 1.170 11 H -0.185 1.185 12 H -0.160 1.160 13 C -0.062 4.062 14 H 0.076 0.924 15 C -0.128 4.128 16 C -0.172 4.172 17 C -0.138 4.138 18 C -0.083 4.083 19 H 0.040 0.960 20 H 0.092 0.908 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.108 0.892 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.988 1.364 -1.342 2.153 hybrid contribution 0.206 0.268 0.767 0.838 sum 1.194 1.632 -0.575 2.102 Atomic orbital electron populations 1.22322 0.86794 1.02319 1.00479 1.59438 1.08249 1.11863 1.45167 1.22135 0.96617 0.87498 1.00233 1.20586 0.93575 1.01370 1.00478 1.21070 1.00336 0.93354 0.99979 1.20531 0.90429 0.94896 1.01180 1.30516 1.03741 0.92345 0.98237 1.68768 1.28932 1.07996 1.19233 0.85244 0.76129 0.81059 0.79288 1.17020 1.18457 1.15983 1.21366 0.90940 0.97863 0.95985 0.92379 1.22591 0.94256 1.03451 0.92545 1.22504 0.95838 1.00698 0.98153 1.21310 0.98700 1.00329 0.93465 1.19975 0.96735 1.01909 0.89672 0.96032 0.90818 0.95807 0.91575 0.89160 0.94985 0.90599 0.90130 0.90585 0.92068 0.88198 0.84767 0.89370 0.92330 0.91665 0.92114 0.92558 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 9.01 127.69 1.15 1.18 16 2 N -0.52 -1.28 4.70 -923.62 -4.34 -5.62 16 3 C 0.06 -0.03 5.28 84.23 0.44 0.42 16 4 C -0.12 0.26 5.27 28.70 0.15 0.42 16 5 C -0.11 0.10 4.66 29.73 0.14 0.24 16 6 C -0.05 -0.01 1.94 -11.68 -0.02 -0.04 16 7 C 0.00 0.00 4.62 88.67 0.41 0.41 16 8 N -0.64 -0.54 9.06 24.11 0.22 -0.32 16 9 Si 0.97 -2.30 29.08 68.60 2.00 -0.31 16 10 H -0.25 0.33 7.11 99.48 0.71 1.03 16 11 H -0.26 0.09 7.11 99.48 0.71 0.79 16 12 H -0.24 0.40 7.11 99.48 0.71 1.11 16 13 C -0.04 -0.13 3.10 -10.05 -0.03 -0.16 16 14 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 15 C -0.09 -0.30 3.94 31.81 0.13 -0.17 16 16 C -0.13 -0.38 6.85 31.76 0.22 -0.16 16 17 C -0.10 -0.30 5.19 30.23 0.16 -0.14 16 18 C 0.03 0.09 3.24 44.98 0.15 0.24 16 19 H 0.02 0.08 2.08 -2.39 0.00 0.07 16 20 H 0.07 -0.08 8.03 -2.39 -0.02 -0.10 16 21 H 0.02 0.02 7.60 -2.39 -0.02 0.01 16 22 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 23 H 0.09 -0.22 7.93 -2.38 -0.02 -0.24 16 24 H 0.03 0.02 7.61 -2.39 -0.02 0.01 16 25 H 0.08 -0.15 7.47 -2.39 -0.02 -0.17 16 26 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 27 H 0.08 -0.23 7.40 -2.39 -0.02 -0.25 16 28 H 0.06 0.10 5.07 -2.39 -0.01 0.09 16 29 H 0.10 -0.06 7.15 -2.39 -0.02 -0.08 16 30 H 0.33 -0.61 8.23 -92.70 -0.76 -1.38 16 31 H 0.09 0.40 6.46 -2.39 -0.02 0.39 16 32 H 0.06 0.26 6.04 -2.39 -0.01 0.25 16 33 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.05 0.17 8.07 -2.38 -0.02 0.16 16 Total: 0.00 -3.72 255.26 1.81 -1.92 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.05 Total: 2.11 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 2.89 Total: 2.23 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -4.12 Total: -5.94 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.00 Total: -0.31 kcal Total: -3.72 1.81 -1.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260318066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.081 kcal (2) G-P(sol) polarization free energy of solvation -3.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds