Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46909 * 109.47028 * 2 1 4 4 C 1.46846 * 111.00021 * 66.04474 * 3 2 1 5 5 C 1.53040 * 109.51916 * 185.84094 * 4 3 2 6 6 C 1.53119 * 109.31067 * 300.79964 * 5 4 3 7 7 C 1.53203 * 109.11635 * 57.63678 * 6 5 4 8 8 C 1.46851 * 110.99835 * 190.25559 * 3 2 1 9 9 H 1.09001 * 109.46160 * 294.17487 * 8 3 2 10 10 C 1.50698 * 109.46036 * 54.14219 * 8 3 2 11 11 C 1.35041 * 119.99841 * 245.75992 * 10 8 3 12 12 C 1.40068 * 119.99780 * 6.15952 * 11 10 8 13 13 H 1.08004 * 120.00518 * 9.47045 * 12 11 10 14 14 C 1.40317 * 119.99865 * 189.47109 * 12 11 10 15 15 N 1.30685 * 119.99549 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99927 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46764 * 89.99773 * 16 14 12 18 18 H 1.48495 * 109.46805 * 209.99564 * 16 14 12 19 19 H 1.48501 * 109.47318 * 330.00290 * 16 14 12 20 20 H 1.09005 * 109.47409 * 300.00435 * 1 2 3 21 21 H 1.08994 * 109.46890 * 60.00204 * 1 2 3 22 22 H 1.08997 * 109.47056 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47328 * 239.99692 * 2 1 3 24 24 H 1.09004 * 109.47110 * 119.99043 * 2 1 3 25 25 H 1.08993 * 109.46204 * 65.82870 * 4 3 2 26 26 H 1.08999 * 109.45145 * 305.84849 * 4 3 2 27 27 H 1.09000 * 109.50291 * 60.76388 * 5 4 3 28 28 H 1.08999 * 109.50067 * 180.83638 * 5 4 3 29 29 H 1.08996 * 109.52139 * 177.58066 * 6 5 4 30 30 H 1.08996 * 109.52070 * 297.76919 * 6 5 4 31 31 H 1.08997 * 109.49295 * 182.41780 * 7 6 5 32 32 H 1.09007 * 109.52685 * 62.33967 * 7 6 5 33 33 H 1.08000 * 120.00392 * 65.76467 * 10 8 3 34 34 H 1.07999 * 119.99871 * 186.16343 * 11 10 8 35 35 H 0.97009 * 119.99700 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6703 2.0668 1.2528 5 6 2.0655 3.5423 1.1595 6 6 3.5713 3.6479 0.9029 7 6 3.9158 2.8880 -0.3820 8 6 3.4670 1.4315 -0.2441 9 1 3.9912 0.9675 0.5913 10 6 3.7862 0.6853 -1.5138 11 6 4.5184 -0.4483 -1.4649 12 6 4.8717 -1.0009 -0.2272 13 1 4.4354 -0.6133 0.6816 14 6 5.7925 -2.0580 -0.1681 15 7 6.3208 -2.5265 -1.2677 16 14 6.2642 -2.7945 1.4826 17 1 5.3398 -3.9098 1.8092 18 1 7.6558 -3.3083 1.4157 19 1 6.1718 -1.7508 2.5349 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 2.2030 1.5998 2.0811 26 1 0.5962 1.9884 1.4214 27 1 1.5227 4.0133 0.3400 28 1 1.8196 4.0447 2.0951 29 1 3.8495 4.6960 0.7931 30 1 4.1151 3.2117 1.7408 31 1 4.9925 2.9229 -0.5477 32 1 3.4027 3.3486 -1.2263 33 1 3.4295 1.0571 -2.4630 34 1 4.8317 -0.9287 -2.3800 35 1 6.9572 -3.2576 -1.2268 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260391753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = -8.287599 kcal Electronic energy + Delta-G solvation = -14337.907420 eV Core-core repulsion = 12141.972506 eV Total energy + Delta-G solvation = -2195.934913 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.48680 -34.30475 -33.54791 -31.95627 -29.05637 -28.93244 -25.08156 -23.73616 -22.07081 -20.57953 -19.11225 -18.67959 -16.33782 -15.13486 -14.82403 -14.36771 -13.86484 -13.63441 -13.17661 -12.89953 -12.76032 -12.44885 -12.04244 -11.32191 -11.23224 -11.10168 -11.00171 -10.87976 -10.50145 -10.38322 -10.22849 -9.93839 -9.63773 -9.54909 -9.39688 -8.82596 -7.62355 -7.22423 -6.72208 -4.24172 2.95254 3.08789 3.13500 3.88117 3.99022 4.82016 5.36780 5.40516 5.47472 5.61618 5.80267 5.92476 6.03101 6.05676 6.10734 6.14573 6.28276 6.37257 6.48420 6.53242 6.64472 6.67510 6.75577 6.82124 7.04533 7.10233 7.18968 7.26511 7.64971 7.81101 8.10810 8.20609 8.48898 8.71182 9.14204 9.29993 10.31310 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.009756 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.639498 B = 2869.424413 C = 3049.029502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 N -0.535 5.535 4 C 0.050 3.950 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.102 4.102 8 C 0.157 3.843 9 H 0.041 0.959 10 C -0.402 4.402 11 C 0.054 3.946 12 C -0.461 4.461 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.822 5.822 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.263 1.263 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.091 0.909 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 5.258 4.769 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 N -0.260 5.260 4 C -0.078 4.078 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.140 4.140 8 C 0.051 3.949 9 H 0.059 0.941 10 C -0.425 4.425 11 C 0.033 3.967 12 C -0.492 4.492 13 H 0.089 0.911 14 C -0.142 4.142 15 N -0.449 5.449 16 Si 0.730 3.270 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.110 0.890 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.549 5.325 4.301 8.812 hybrid contribution 0.710 -0.882 1.401 1.801 sum -4.839 4.443 5.702 8.699 Atomic orbital electron populations 1.21833 0.96939 1.00360 1.01203 1.21893 0.93379 0.89721 1.01895 1.62178 1.17026 1.15278 1.31527 1.22070 0.99494 0.94410 0.91836 1.21528 0.96604 0.96263 1.00551 1.21652 0.95837 0.99446 0.99100 1.21592 1.00128 0.96303 0.95984 1.20120 0.84426 0.93048 0.97329 0.94110 1.21757 1.22193 1.04449 0.94116 1.19898 0.89790 0.91021 0.96010 1.19630 1.21155 1.13131 0.95242 0.91058 1.26094 0.94716 0.95758 0.97665 1.69574 1.23832 1.22468 1.28986 0.86372 0.78227 0.79746 0.82693 1.19483 1.20289 1.18716 0.93797 0.92541 0.93243 0.89049 0.96042 0.96161 0.91880 0.91723 0.92866 0.93005 0.92862 0.92322 0.92503 0.91403 0.90447 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.85 37.16 0.37 -1.98 16 2 C 0.06 1.18 5.47 -3.82 -0.02 1.16 16 3 N -0.53 -10.78 4.48 -228.08 -1.02 -11.80 16 4 C 0.05 0.87 5.29 -3.83 -0.02 0.85 16 5 C -0.11 -1.73 6.09 -26.65 -0.16 -1.89 16 6 C -0.12 -2.02 6.01 -26.57 -0.16 -2.18 16 7 C -0.10 -1.99 5.36 -26.61 -0.14 -2.13 16 8 C 0.16 3.48 1.97 -68.88 -0.14 3.35 16 9 H 0.04 1.01 5.50 -51.93 -0.29 0.73 16 10 C -0.40 -9.98 7.41 -35.45 -0.26 -10.25 16 11 C 0.05 1.45 9.10 -40.03 -0.36 1.08 16 12 C -0.46 -12.39 8.48 -38.11 -0.32 -12.71 16 13 H 0.07 1.91 5.77 -52.48 -0.30 1.61 16 14 C 0.07 1.91 5.50 -17.26 -0.09 1.82 16 15 N -0.82 -21.95 12.89 55.57 0.72 -21.23 16 16 Si 0.90 19.49 29.56 -169.99 -5.03 14.47 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 20 H 0.04 0.65 6.44 -51.93 -0.33 0.31 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 2.05 6.35 -51.93 -0.33 1.72 16 24 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.99 6.22 -51.93 -0.32 0.67 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.08 2.19 7.46 -52.49 -0.39 1.80 16 35 H 0.28 6.82 8.29 -40.82 -0.34 6.48 16 LS Contribution 274.27 15.07 4.13 4.13 Total: -1.00 -26.63 274.27 -8.27 -34.90 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.75 Total: 2.42 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.32 Total: -22.88 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: -0.31 Total: -33.04 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.63 -8.27 -34.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.614 kcal (2) G-P(sol) polarization free energy of solvation -26.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds