Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47483 * 111.00418 * 2 1 4 4 C 1.53697 * 87.92735 * 138.69796 * 3 2 1 5 5 C 1.47480 * 110.99977 * 95.97126 * 2 1 3 6 6 H 1.09001 * 113.47522 * 336.06047 * 5 2 1 7 7 C 1.53004 * 113.48032 * 106.46795 * 5 2 1 8 8 H 1.09000 * 109.46979 * 174.37702 * 7 5 2 9 9 C 1.50697 * 109.47039 * 54.37584 * 7 5 2 10 10 H 1.08002 * 119.99838 * 303.40561 * 9 7 5 11 11 C 1.37871 * 120.00100 * 123.40798 * 9 7 5 12 12 N 1.31507 * 120.00140 * 6.02562 * 11 9 7 13 13 Si 1.86809 * 120.00106 * 186.03101 * 11 9 7 14 14 H 1.48504 * 109.46758 * 89.99737 * 13 11 9 15 15 H 1.48494 * 109.46944 * 209.99730 * 13 11 9 16 16 H 1.48500 * 109.46837 * 329.99942 * 13 11 9 17 17 C 1.52998 * 109.46749 * 294.37776 * 7 5 2 18 18 C 1.53785 * 113.61104 * 277.49419 * 17 7 5 19 19 C 1.53785 * 87.07716 * 220.01990 * 18 17 7 20 20 C 1.53774 * 87.08298 * 25.43665 * 19 18 17 21 21 H 1.09007 * 109.47112 * 324.03105 * 1 2 3 22 22 H 1.09002 * 109.46951 * 84.02891 * 1 2 3 23 23 H 1.08998 * 109.47868 * 204.03187 * 1 2 3 24 24 H 1.09000 * 113.47140 * 253.46841 * 3 2 1 25 25 H 1.09002 * 113.47352 * 23.87151 * 3 2 1 26 26 H 1.09002 * 114.22795 * 220.35419 * 4 3 2 27 27 H 1.09004 * 114.16951 * 87.59625 * 4 3 2 28 28 H 0.97002 * 119.99954 * 180.02562 * 12 11 9 29 29 H 1.09002 * 112.85230 * 48.80201 * 17 7 5 30 30 H 1.08998 * 113.61645 * 334.56585 * 18 17 7 31 31 H 1.09002 * 113.61151 * 105.47629 * 18 17 7 32 32 H 1.08998 * 113.61930 * 270.88006 * 19 18 17 33 33 H 1.09008 * 113.60847 * 139.98503 * 19 18 17 34 34 H 1.09003 * 113.61511 * 220.01974 * 20 19 18 35 35 H 1.08999 * 113.62021 * 89.11145 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0548 0.9113 1.0138 5 6 1.9974 -0.1432 1.3694 6 1 1.2999 0.1840 2.1404 7 6 2.5873 -1.5261 1.6536 8 1 3.0458 -1.5292 2.6425 9 6 3.6302 -1.8505 0.6153 10 1 3.3704 -1.8387 -0.4330 11 6 4.9158 -2.1623 1.0034 12 7 5.2039 -2.2930 2.2799 13 14 6.2487 -2.3990 -0.2838 14 1 6.9115 -1.0980 -0.5550 15 1 7.2532 -3.3714 0.2167 16 1 5.6410 -2.9155 -1.5364 17 6 1.4746 -2.5751 1.6040 18 6 0.6721 -2.6841 2.9113 19 6 0.6785 -4.2068 2.6960 20 6 1.9651 -4.0066 1.8779 21 1 -0.3634 0.8318 0.6036 22 1 -0.3633 0.1069 -1.0221 23 1 -0.3635 -0.9385 0.4185 24 1 2.4187 1.6802 -0.9585 25 1 1.2996 2.1099 0.4046 26 1 3.2565 1.6275 1.8104 27 1 3.9581 0.5026 0.5607 28 1 6.1085 -2.5120 2.5530 29 1 0.8518 -2.4897 0.7136 30 1 1.2282 -2.3654 3.7929 31 1 -0.3211 -2.2390 2.8523 32 1 -0.1632 -4.5678 2.1051 33 1 0.8285 -4.7767 3.6131 34 1 2.0157 -4.6292 0.9845 35 1 2.8747 -4.0494 2.4769 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = 49.343817 kcal Electronic energy + Delta-G solvation = -14721.288492 eV Core-core repulsion = 12527.852664 eV Total energy + Delta-G solvation = -2193.435828 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.46879 -37.43372 -32.81475 -30.05666 -29.15510 -25.01584 -24.09285 -23.94209 -23.37025 -20.65949 -18.60446 -18.19947 -16.16879 -15.02407 -14.82547 -14.51861 -14.17546 -13.85327 -13.12020 -12.51439 -12.22504 -11.89230 -11.43745 -11.40912 -11.12262 -10.87735 -10.69467 -10.52790 -10.50219 -10.19758 -9.98394 -9.61493 -9.47354 -8.93207 -8.70968 -8.62752 -8.20599 -7.87219 -5.86780 -3.81616 3.38701 3.46273 3.51156 4.56462 4.88045 5.39777 5.48384 5.57197 5.61235 5.70798 5.74789 5.80236 5.90248 6.06495 6.15388 6.26585 6.28306 6.35237 6.40982 6.55087 6.60411 6.69145 6.78580 6.96438 7.06146 7.21104 7.27449 7.38930 7.50793 7.74339 7.87918 8.09673 8.14254 8.70963 9.29963 9.77365 11.23019 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.016140 C = 0.010654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.626478 B = 1734.408283 C = 2627.580272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.450 5.450 3 C -0.012 4.012 4 C -0.128 4.128 5 C 0.039 3.961 6 H 0.043 0.957 7 C 0.055 3.945 8 H 0.070 0.930 9 C -0.471 4.471 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.901 5.901 13 Si 0.880 3.120 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.275 1.275 17 C -0.086 4.086 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.112 4.112 21 H 0.020 0.980 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.257 0.743 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 2.862 -0.405 7.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.172 5.172 3 C -0.141 4.141 4 C -0.165 4.165 5 C -0.070 4.070 6 H 0.061 0.939 7 C 0.036 3.964 8 H 0.088 0.912 9 C -0.509 4.509 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.541 5.541 13 Si 0.709 3.291 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.200 1.200 17 C -0.104 4.104 18 C -0.182 4.182 19 C -0.189 4.189 20 C -0.149 4.149 21 H 0.039 0.961 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.129 0.871 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.674 2.323 -0.830 7.115 hybrid contribution 0.258 0.449 -0.084 0.525 sum -6.416 2.773 -0.914 7.049 Atomic orbital electron populations 1.22905 0.92081 1.00540 1.00518 1.69004 1.06384 1.16728 1.25108 1.23850 0.98074 0.91980 1.00210 1.23198 0.98994 0.96993 0.97339 1.23634 0.94508 1.00400 0.88474 0.93941 1.18897 0.91528 0.86453 0.99495 0.91205 1.20948 0.93087 1.43588 0.93304 0.92266 1.24926 0.98565 0.95677 0.94767 1.69897 1.19724 1.50147 1.14331 0.86786 0.82202 0.77702 0.82435 1.20980 1.21756 1.20044 1.22550 0.96961 0.96826 0.94094 1.23037 0.99109 0.95627 1.00432 1.22889 0.99441 0.96744 0.99816 1.22666 0.96314 0.97303 0.98644 0.96114 0.92501 0.91572 0.91088 0.93303 0.93108 0.87103 0.93353 0.91497 0.90860 0.93841 0.91840 0.93036 0.93455 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.46 60.06 0.57 0.38 16 2 N -0.45 -8.93 5.77 -244.55 -1.41 -10.34 16 3 C -0.01 -0.21 7.71 -7.45 -0.06 -0.27 16 4 C -0.13 -2.58 7.76 -26.10 -0.20 -2.78 16 5 C 0.04 0.81 2.92 -71.43 -0.21 0.61 16 6 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 7 C 0.06 1.30 2.07 -91.77 -0.19 1.11 16 8 H 0.07 1.86 6.75 -51.93 -0.35 1.51 16 9 C -0.47 -12.29 5.64 -34.44 -0.19 -12.49 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.62 5.45 -17.82 -0.10 1.52 16 12 N -0.90 -25.21 12.63 55.43 0.70 -24.51 16 13 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.09 -1.82 2.82 -89.81 -0.25 -2.08 16 18 C -0.14 -2.70 7.63 -25.91 -0.20 -2.90 16 19 C -0.15 -2.70 8.08 -25.92 -0.21 -2.91 16 20 C -0.11 -2.38 7.10 -25.92 -0.18 -2.56 16 21 H 0.02 0.32 7.52 -51.93 -0.39 -0.07 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 1.12 6.58 -51.93 -0.34 0.78 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 0.78 7.54 -51.93 -0.39 0.38 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.11 2.55 6.68 -51.93 -0.35 2.21 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.07 1.45 6.39 -51.93 -0.33 1.12 16 30 H 0.07 1.41 7.96 -51.93 -0.41 1.00 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.09 2.13 8.10 -51.93 -0.42 1.71 16 LS Contribution 274.37 15.07 4.13 4.13 Total: -1.00 -26.86 274.37 -8.72 -35.59 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.90 Total: 1.17 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -1.23 Total: -22.36 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.71 Total: -34.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.86 -8.72 -35.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.930 kcal (2) G-P(sol) polarization free energy of solvation -26.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds