Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47483 * 111.00418 * 2 1 4 4 C 1.53697 * 87.92735 * 138.69796 * 3 2 1 5 5 C 1.47480 * 110.99977 * 95.97126 * 2 1 3 6 6 H 1.09001 * 113.47522 * 336.06047 * 5 2 1 7 7 C 1.53004 * 113.48032 * 106.46795 * 5 2 1 8 8 H 1.09000 * 109.46979 * 174.37702 * 7 5 2 9 9 C 1.50697 * 109.47039 * 54.37584 * 7 5 2 10 10 H 1.08002 * 119.99838 * 303.40561 * 9 7 5 11 11 C 1.37871 * 120.00100 * 123.40798 * 9 7 5 12 12 N 1.31507 * 120.00140 * 6.02562 * 11 9 7 13 13 Si 1.86809 * 120.00106 * 186.03101 * 11 9 7 14 14 H 1.48504 * 109.46758 * 89.99737 * 13 11 9 15 15 H 1.48494 * 109.46944 * 209.99730 * 13 11 9 16 16 H 1.48500 * 109.46837 * 329.99942 * 13 11 9 17 17 C 1.52998 * 109.46749 * 294.37776 * 7 5 2 18 18 C 1.53785 * 113.61104 * 277.49419 * 17 7 5 19 19 C 1.53785 * 87.07716 * 220.01990 * 18 17 7 20 20 C 1.53774 * 87.08298 * 25.43665 * 19 18 17 21 21 H 1.09007 * 109.47112 * 324.03105 * 1 2 3 22 22 H 1.09002 * 109.46951 * 84.02891 * 1 2 3 23 23 H 1.08998 * 109.47868 * 204.03187 * 1 2 3 24 24 H 1.09000 * 113.47140 * 253.46841 * 3 2 1 25 25 H 1.09002 * 113.47352 * 23.87151 * 3 2 1 26 26 H 1.09002 * 114.22795 * 220.35419 * 4 3 2 27 27 H 1.09004 * 114.16951 * 87.59625 * 4 3 2 28 28 H 0.97002 * 119.99954 * 180.02562 * 12 11 9 29 29 H 1.09002 * 112.85230 * 48.80201 * 17 7 5 30 30 H 1.08998 * 113.61645 * 334.56585 * 18 17 7 31 31 H 1.09002 * 113.61151 * 105.47629 * 18 17 7 32 32 H 1.08998 * 113.61930 * 270.88006 * 19 18 17 33 33 H 1.09008 * 113.60847 * 139.98503 * 19 18 17 34 34 H 1.09003 * 113.61511 * 220.01974 * 20 19 18 35 35 H 1.08999 * 113.62021 * 89.11145 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0548 0.9113 1.0138 5 6 1.9974 -0.1432 1.3694 6 1 1.2999 0.1840 2.1404 7 6 2.5873 -1.5261 1.6536 8 1 3.0458 -1.5292 2.6425 9 6 3.6302 -1.8505 0.6153 10 1 3.3704 -1.8387 -0.4330 11 6 4.9158 -2.1623 1.0034 12 7 5.2039 -2.2930 2.2799 13 14 6.2487 -2.3990 -0.2838 14 1 6.9115 -1.0980 -0.5550 15 1 7.2532 -3.3714 0.2167 16 1 5.6410 -2.9155 -1.5364 17 6 1.4746 -2.5751 1.6040 18 6 0.6721 -2.6841 2.9113 19 6 0.6785 -4.2068 2.6960 20 6 1.9651 -4.0066 1.8779 21 1 -0.3634 0.8318 0.6036 22 1 -0.3633 0.1069 -1.0221 23 1 -0.3635 -0.9385 0.4185 24 1 2.4187 1.6802 -0.9585 25 1 1.2996 2.1099 0.4046 26 1 3.2565 1.6275 1.8104 27 1 3.9581 0.5026 0.5607 28 1 6.1085 -2.5120 2.5530 29 1 0.8518 -2.4897 0.7136 30 1 1.2282 -2.3654 3.7929 31 1 -0.3211 -2.2390 2.8523 32 1 -0.1632 -4.5678 2.1051 33 1 0.8285 -4.7767 3.6131 34 1 2.0157 -4.6292 0.9845 35 1 2.8747 -4.0494 2.4769 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = 33.477070 kcal Electronic energy + Delta-G solvation = -14721.976526 eV Core-core repulsion = 12527.852664 eV Total energy + Delta-G solvation = -2194.123861 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04556 -39.02470 -34.80187 -31.71851 -30.78081 -26.83063 -25.87812 -25.46809 -24.82060 -22.31418 -20.25016 -19.87913 -18.11353 -16.65626 -16.49948 -16.25810 -15.76619 -15.43946 -14.75833 -14.01002 -13.88268 -13.61599 -13.11145 -13.06649 -12.78661 -12.72519 -12.45729 -12.25845 -12.07682 -11.89475 -11.52577 -11.26317 -11.16566 -10.76241 -10.58687 -10.44443 -10.07816 -9.38770 -7.94761 -5.92421 1.41967 1.45309 1.53317 2.53745 3.32749 3.43492 3.97001 4.04730 4.11444 4.14876 4.23484 4.37192 4.46880 4.59036 4.67633 4.74517 4.90717 4.93280 4.95402 5.05217 5.13791 5.15571 5.18698 5.28152 5.38225 5.56141 5.64035 5.67596 5.83439 5.90624 5.99554 6.14485 6.47457 6.76821 7.21571 7.67546 9.14355 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.016140 C = 0.010654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.626478 B = 1734.408283 C = 2627.580272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.477 5.477 3 C 0.004 3.996 4 C -0.136 4.136 5 C 0.040 3.960 6 H 0.056 0.944 7 C 0.055 3.945 8 H 0.034 0.966 9 C -0.461 4.461 10 H 0.042 0.958 11 C 0.017 3.983 12 N -0.929 5.929 13 Si 0.927 3.073 14 H -0.280 1.280 15 H -0.293 1.293 16 H -0.276 1.276 17 C -0.089 4.089 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.123 4.123 21 H 0.038 0.962 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.253 0.747 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 3.490 -0.839 9.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.199 5.199 3 C -0.125 4.125 4 C -0.174 4.174 5 C -0.069 4.069 6 H 0.074 0.926 7 C 0.036 3.964 8 H 0.052 0.948 9 C -0.500 4.500 10 H 0.061 0.939 11 C -0.179 4.179 12 N -0.571 5.571 13 Si 0.755 3.245 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.201 1.201 17 C -0.107 4.107 18 C -0.172 4.172 19 C -0.169 4.169 20 C -0.160 4.160 21 H 0.057 0.943 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.598 2.958 -1.279 9.182 hybrid contribution 0.830 0.267 0.018 0.872 sum -7.768 3.226 -1.261 8.505 Atomic orbital electron populations 1.22921 0.89987 1.01117 1.01830 1.68917 1.08727 1.18313 1.23950 1.23802 0.97196 0.91645 0.99827 1.23092 0.98187 0.97467 0.98636 1.23480 0.95156 0.98547 0.89763 0.92619 1.18760 0.91831 0.89136 0.96652 0.94814 1.21024 0.93838 1.42227 0.92908 0.93936 1.25431 1.00249 0.96255 0.95985 1.70012 1.19694 1.51801 1.15569 0.86032 0.80297 0.77544 0.80581 1.20586 1.21903 1.20083 1.22475 0.96742 0.95795 0.95723 1.22908 0.99613 0.96487 0.98142 1.22809 0.97800 0.96376 0.99876 1.22609 0.96901 0.97815 0.98707 0.94296 0.91071 0.91923 0.90427 0.90454 0.91832 0.90571 0.93752 0.91377 0.91986 0.91270 0.89378 0.91731 0.94022 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.29 9.46 127.69 1.21 0.92 16 2 N -0.48 -17.95 5.77 -927.63 -5.35 -23.30 16 3 C 0.00 0.14 7.71 83.64 0.64 0.78 16 4 C -0.14 -5.41 7.76 31.00 0.24 -5.17 16 5 C 0.04 1.62 2.92 42.19 0.12 1.75 16 6 H 0.06 2.12 7.91 -2.39 -0.02 2.10 16 7 C 0.06 2.64 2.07 -11.54 -0.02 2.61 16 8 H 0.03 1.85 6.75 -2.39 -0.02 1.83 16 9 C -0.46 -24.57 5.64 25.60 0.14 -24.43 16 10 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 11 C 0.02 0.94 5.45 84.65 0.46 1.41 16 12 N -0.93 -53.71 12.63 21.44 0.27 -53.44 16 13 Si 0.93 44.69 29.54 68.60 2.03 46.72 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 17 C -0.09 -3.72 2.82 -10.27 -0.03 -3.75 16 18 C -0.13 -4.74 7.63 31.12 0.24 -4.50 16 19 C -0.13 -4.38 8.08 31.12 0.25 -4.13 16 20 C -0.12 -5.23 7.10 31.12 0.22 -5.00 16 21 H 0.04 1.03 7.52 -2.38 -0.02 1.01 16 22 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.06 1.93 6.58 -2.39 -0.02 1.91 16 24 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.08 2.14 7.54 -2.39 -0.02 2.12 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 3.56 6.68 -2.38 -0.02 3.55 16 28 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.07 2.85 6.39 -2.39 -0.02 2.83 16 30 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 2.66 8.10 -2.39 -0.02 2.64 16 Total: -1.00 -58.26 274.37 1.46 -56.80 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.04 Total: 12.74 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.48 Total: -39.51 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -5.08 Total: -76.74 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -58.26 1.46 -56.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.278 kcal (2) G-P(sol) polarization free energy of solvation -58.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds