Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47954 * 111.00122 * 2 1 4 4 C 1.53941 * 86.18203 * 222.41812 * 3 2 1 5 5 C 1.47961 * 110.99837 * 260.63892 * 2 1 3 6 6 H 1.09003 * 113.86447 * 23.25782 * 5 2 1 7 7 C 1.52998 * 113.75947 * 251.89880 * 5 2 1 8 8 H 1.08996 * 109.47603 * 328.47895 * 7 5 2 9 9 C 1.50699 * 109.47410 * 208.47617 * 7 5 2 10 10 H 1.08007 * 119.99927 * 294.91686 * 9 7 5 11 11 C 1.37874 * 120.00171 * 115.18926 * 9 7 5 12 12 N 1.31512 * 120.00150 * 184.50439 * 11 9 7 13 13 Si 1.86798 * 119.99835 * 4.51068 * 11 9 7 14 14 H 1.48498 * 109.47250 * 84.68019 * 13 11 9 15 15 H 1.48500 * 109.47064 * 204.68177 * 13 11 9 16 16 H 1.48500 * 109.47163 * 324.67544 * 13 11 9 17 17 C 1.53008 * 109.46997 * 88.47804 * 7 5 2 18 18 C 1.53779 * 113.61198 * 277.49624 * 17 7 5 19 19 C 1.53780 * 87.08218 * 220.01747 * 18 17 7 20 20 C 1.53776 * 113.61169 * 180.02562 * 17 7 5 21 21 H 1.08996 * 109.47009 * 159.35743 * 1 2 3 22 22 H 1.08997 * 109.47289 * 279.36133 * 1 2 3 23 23 H 1.09004 * 109.46661 * 39.36248 * 1 2 3 24 24 H 1.08993 * 113.76084 * 108.09848 * 3 2 1 25 25 H 1.09005 * 113.86344 * 336.74333 * 3 2 1 26 26 H 1.09002 * 113.73255 * 269.36363 * 4 3 2 27 27 H 1.08997 * 113.73634 * 138.07922 * 4 3 2 28 28 H 0.97001 * 119.99936 * 180.02562 * 12 11 9 29 29 H 1.08997 * 112.84946 * 48.79867 * 17 7 5 30 30 H 1.08997 * 113.61709 * 334.56952 * 18 17 7 31 31 H 1.09005 * 113.61544 * 105.46859 * 18 17 7 32 32 H 1.08999 * 113.61212 * 270.88488 * 19 18 17 33 33 H 1.09000 * 113.61039 * 139.97859 * 19 18 17 34 34 H 1.09004 * 113.61038 * 254.52482 * 20 17 7 35 35 H 1.08996 * 113.62101 * 25.43346 * 20 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 1.9992 -0.2247 -1.3630 6 1 1.3022 0.0433 -2.1570 7 6 2.6263 -1.6062 -1.5605 8 1 3.0670 -1.9427 -0.6221 9 6 3.6970 -1.5254 -2.6179 10 1 3.4320 -1.2878 -3.6376 11 6 5.0141 -1.7604 -2.2847 12 7 5.9585 -1.6035 -3.1864 13 14 5.4570 -2.3017 -0.5526 14 1 5.3074 -3.7749 -0.4409 15 1 6.8629 -1.9233 -0.2601 16 1 4.5530 -1.6370 0.4201 17 6 1.5475 -2.5976 -2.0017 18 6 0.7257 -3.1727 -0.8361 19 6 0.7828 -4.5249 -1.5662 20 6 2.0769 -4.0235 -2.2280 21 1 -0.3633 -0.9617 -0.3623 22 1 -0.3634 0.1672 1.0139 23 1 -0.3633 0.7946 -0.6518 24 1 2.4460 1.6802 0.9482 25 1 1.3023 2.1212 -0.3936 26 1 3.9452 0.5050 -0.5952 27 1 3.1922 1.5757 -1.8568 28 1 6.8851 -1.7691 -2.9520 29 1 0.9383 -2.2220 -2.8237 30 1 1.2559 -3.1679 0.1162 31 1 -0.2796 -2.7575 -0.7640 32 1 -0.0367 -4.6767 -2.2687 33 1 0.9340 -5.3745 -0.9004 34 1 2.1628 -4.2955 -3.2800 35 1 2.9763 -4.2513 -1.6560 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = 47.073925 kcal Electronic energy + Delta-G solvation = -14738.551223 eV Core-core repulsion = 12545.016965 eV Total energy + Delta-G solvation = -2193.534258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.46545 -37.63540 -32.91432 -30.52514 -29.41509 -25.21319 -24.31464 -24.22208 -23.30246 -20.60184 -18.77688 -18.34437 -16.81792 -15.30134 -14.98523 -14.54716 -14.20725 -13.88010 -13.58142 -12.61806 -12.44432 -11.95932 -11.69918 -11.64837 -11.32916 -11.23217 -10.88084 -10.75586 -10.61213 -10.13264 -9.89454 -9.77591 -9.55539 -9.15725 -8.94164 -8.79965 -8.45627 -8.05576 -6.02250 -3.99611 3.33932 3.42799 3.49227 4.48220 4.61050 5.28671 5.36622 5.40291 5.46384 5.52029 5.57403 5.69213 5.80983 5.84814 5.94907 6.11800 6.12831 6.23445 6.29439 6.38604 6.50278 6.58201 6.66826 6.74315 6.84352 6.87578 6.98795 7.05029 7.18438 7.34293 7.55249 7.82887 7.87810 8.60221 9.04114 9.62588 11.11175 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.017288 C = 0.011650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.468572 B = 1619.195664 C = 2402.927102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.484 5.484 3 C -0.012 4.012 4 C -0.121 4.121 5 C 0.053 3.947 6 H 0.059 0.941 7 C 0.035 3.965 8 H 0.051 0.949 9 C -0.494 4.494 10 H 0.070 0.930 11 C 0.076 3.924 12 N -0.903 5.903 13 Si 0.863 3.137 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.254 1.254 17 C -0.089 4.089 18 C -0.138 4.138 19 C -0.152 4.152 20 C -0.116 4.116 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.023 0.977 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 0.877 5.218 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.207 5.207 3 C -0.141 4.141 4 C -0.159 4.159 5 C -0.055 4.055 6 H 0.077 0.923 7 C 0.016 3.984 8 H 0.069 0.931 9 C -0.532 4.532 10 H 0.088 0.912 11 C -0.125 4.125 12 N -0.541 5.541 13 Si 0.691 3.309 14 H -0.203 1.203 15 H -0.220 1.220 16 H -0.179 1.179 17 C -0.108 4.108 18 C -0.175 4.175 19 C -0.190 4.190 20 C -0.154 4.154 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.716 0.412 5.720 10.434 hybrid contribution -0.076 0.276 0.205 0.353 sum -8.792 0.689 5.926 10.625 Atomic orbital electron populations 1.22896 0.91522 1.01229 1.00426 1.68620 1.07362 1.17084 1.27616 1.23954 0.98318 0.91620 1.00194 1.23160 0.98194 0.97398 0.97149 1.23742 0.94531 0.99326 0.87919 0.92282 1.19173 0.93204 0.88585 0.97435 0.93080 1.20781 0.89974 1.46920 0.95536 0.91209 1.25010 0.96338 0.94785 0.96377 1.69901 1.00433 1.49549 1.34205 0.87089 0.77306 0.79717 0.86798 1.20305 1.21973 1.17886 1.22570 0.96784 0.95567 0.95903 1.23053 0.99386 0.96194 0.98903 1.22913 0.99204 0.97103 0.99739 1.22666 0.95893 0.96773 1.00020 0.91098 0.92561 0.95866 0.90657 0.92506 0.89513 0.91916 0.92819 0.91337 0.90641 0.93075 0.91322 0.92792 0.92371 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 60.07 0.58 0.40 16 2 N -0.48 -9.00 6.36 -238.95 -1.52 -10.52 16 3 C -0.01 -0.20 7.96 -2.77 -0.02 -0.22 16 4 C -0.12 -2.43 7.16 -25.79 -0.18 -2.61 16 5 C 0.05 1.09 2.78 -66.65 -0.18 0.90 16 6 H 0.06 1.19 7.91 -51.93 -0.41 0.78 16 7 C 0.04 0.80 1.53 -91.77 -0.14 0.66 16 8 H 0.05 1.24 4.31 -51.93 -0.22 1.02 16 9 C -0.49 -13.16 7.67 -34.44 -0.26 -13.42 16 10 H 0.07 2.05 8.06 -52.48 -0.42 1.63 16 11 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 13 Si 0.86 21.43 26.71 -169.99 -4.54 16.89 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.25 -6.18 6.40 56.52 0.36 -5.82 16 17 C -0.09 -1.80 3.11 -89.81 -0.28 -2.08 16 18 C -0.14 -2.41 6.84 -25.92 -0.18 -2.59 16 19 C -0.15 -2.49 8.08 -25.94 -0.21 -2.70 16 20 C -0.12 -2.29 7.10 -25.94 -0.18 -2.48 16 21 H 0.07 1.09 5.49 -51.93 -0.29 0.81 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.02 0.33 7.62 -51.93 -0.40 -0.06 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.85 7.62 -51.93 -0.40 0.46 16 26 H 0.09 1.92 7.56 -51.93 -0.39 1.53 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.39 7.96 -51.93 -0.41 0.98 16 31 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 LS Contribution 271.40 15.07 4.09 4.09 Total: -1.00 -28.35 271.40 -8.19 -36.54 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.83 Total: 1.32 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.16 Total: -22.10 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.75 Total: -36.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.54 Total: 16.89 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.35 -8.19 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.617 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds