Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47954 * 111.00122 * 2 1 4 4 C 1.53941 * 86.18203 * 222.41812 * 3 2 1 5 5 C 1.47961 * 110.99837 * 260.63892 * 2 1 3 6 6 H 1.09003 * 113.86447 * 23.25782 * 5 2 1 7 7 C 1.52998 * 113.75947 * 251.89880 * 5 2 1 8 8 H 1.08996 * 109.47603 * 328.47895 * 7 5 2 9 9 C 1.50699 * 109.47410 * 208.47617 * 7 5 2 10 10 H 1.08007 * 119.99927 * 294.91686 * 9 7 5 11 11 C 1.37874 * 120.00171 * 115.18926 * 9 7 5 12 12 N 1.31512 * 120.00150 * 184.50439 * 11 9 7 13 13 Si 1.86798 * 119.99835 * 4.51068 * 11 9 7 14 14 H 1.48498 * 109.47250 * 84.68019 * 13 11 9 15 15 H 1.48500 * 109.47064 * 204.68177 * 13 11 9 16 16 H 1.48500 * 109.47163 * 324.67544 * 13 11 9 17 17 C 1.53008 * 109.46997 * 88.47804 * 7 5 2 18 18 C 1.53779 * 113.61198 * 277.49624 * 17 7 5 19 19 C 1.53780 * 87.08218 * 220.01747 * 18 17 7 20 20 C 1.53776 * 113.61169 * 180.02562 * 17 7 5 21 21 H 1.08996 * 109.47009 * 159.35743 * 1 2 3 22 22 H 1.08997 * 109.47289 * 279.36133 * 1 2 3 23 23 H 1.09004 * 109.46661 * 39.36248 * 1 2 3 24 24 H 1.08993 * 113.76084 * 108.09848 * 3 2 1 25 25 H 1.09005 * 113.86344 * 336.74333 * 3 2 1 26 26 H 1.09002 * 113.73255 * 269.36363 * 4 3 2 27 27 H 1.08997 * 113.73634 * 138.07922 * 4 3 2 28 28 H 0.97001 * 119.99936 * 180.02562 * 12 11 9 29 29 H 1.08997 * 112.84946 * 48.79867 * 17 7 5 30 30 H 1.08997 * 113.61709 * 334.56952 * 18 17 7 31 31 H 1.09005 * 113.61544 * 105.46859 * 18 17 7 32 32 H 1.08999 * 113.61212 * 270.88488 * 19 18 17 33 33 H 1.09000 * 113.61039 * 139.97859 * 19 18 17 34 34 H 1.09004 * 113.61038 * 254.52482 * 20 17 7 35 35 H 1.08996 * 113.62101 * 25.43346 * 20 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 1.9992 -0.2247 -1.3630 6 1 1.3022 0.0433 -2.1570 7 6 2.6263 -1.6062 -1.5605 8 1 3.0670 -1.9427 -0.6221 9 6 3.6970 -1.5254 -2.6179 10 1 3.4320 -1.2878 -3.6376 11 6 5.0141 -1.7604 -2.2847 12 7 5.9585 -1.6035 -3.1864 13 14 5.4570 -2.3017 -0.5526 14 1 5.3074 -3.7749 -0.4409 15 1 6.8629 -1.9233 -0.2601 16 1 4.5530 -1.6370 0.4201 17 6 1.5475 -2.5976 -2.0017 18 6 0.7257 -3.1727 -0.8361 19 6 0.7828 -4.5249 -1.5662 20 6 2.0769 -4.0235 -2.2280 21 1 -0.3633 -0.9617 -0.3623 22 1 -0.3634 0.1672 1.0139 23 1 -0.3633 0.7946 -0.6518 24 1 2.4460 1.6802 0.9482 25 1 1.3023 2.1212 -0.3936 26 1 3.9452 0.5050 -0.5952 27 1 3.1922 1.5757 -1.8568 28 1 6.8851 -1.7691 -2.9520 29 1 0.9383 -2.2220 -2.8237 30 1 1.2559 -3.1679 0.1162 31 1 -0.2796 -2.7575 -0.7640 32 1 -0.0367 -4.6767 -2.2687 33 1 0.9340 -5.3745 -0.9004 34 1 2.1628 -4.2955 -3.2800 35 1 2.9763 -4.2513 -1.6560 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = 28.467772 kcal Electronic energy + Delta-G solvation = -14739.358046 eV Core-core repulsion = 12545.016965 eV Total energy + Delta-G solvation = -2194.341081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98474 -39.11784 -34.94222 -32.30986 -30.87376 -26.92574 -25.98748 -25.68120 -24.71704 -22.21545 -20.44650 -19.85437 -18.89854 -16.75073 -16.46722 -16.41901 -15.64354 -15.38645 -15.25728 -14.49790 -13.92925 -13.48797 -13.42309 -13.20488 -12.96651 -12.81184 -12.59014 -12.25370 -12.13743 -11.80860 -11.58507 -11.40330 -11.20939 -10.90588 -10.76568 -10.56443 -10.32849 -9.51915 -8.21584 -6.19999 1.33439 1.37367 1.48044 2.38934 3.04080 3.33369 3.91112 3.93667 4.00550 4.06813 4.17395 4.30150 4.33081 4.55588 4.57421 4.67160 4.83983 4.87769 4.90273 5.00009 5.07240 5.10676 5.15273 5.21104 5.27231 5.27731 5.40161 5.48943 5.62423 5.72477 5.81751 5.90807 6.32456 6.51211 6.85984 7.44594 8.95805 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.017288 C = 0.011650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.468572 B = 1619.195664 C = 2402.927102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.498 5.498 3 C 0.006 3.994 4 C -0.135 4.135 5 C 0.052 3.948 6 H 0.062 0.938 7 C 0.037 3.963 8 H 0.038 0.962 9 C -0.479 4.479 10 H 0.030 0.970 11 C 0.025 3.975 12 N -0.952 5.952 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.295 1.295 16 H -0.244 1.244 17 C -0.098 4.098 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.131 4.131 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 0.838 7.076 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.220 5.220 3 C -0.122 4.122 4 C -0.173 4.173 5 C -0.057 4.057 6 H 0.080 0.920 7 C 0.018 3.982 8 H 0.056 0.944 9 C -0.518 4.518 10 H 0.048 0.952 11 C -0.171 4.171 12 N -0.593 5.593 13 Si 0.745 3.255 14 H -0.198 1.198 15 H -0.222 1.222 16 H -0.168 1.168 17 C -0.117 4.117 18 C -0.162 4.162 19 C -0.169 4.169 20 C -0.168 4.168 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.053 0.947 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.173 0.375 7.595 13.515 hybrid contribution 0.636 0.333 -0.453 0.849 sum -10.537 0.708 7.141 12.749 Atomic orbital electron populations 1.22951 0.89276 1.01849 1.01970 1.68513 1.09712 1.18275 1.25537 1.23943 0.97128 0.91424 0.99730 1.23158 0.97911 0.97850 0.98374 1.23527 0.95041 0.97587 0.89519 0.91968 1.19081 0.93019 0.90977 0.95164 0.94392 1.20955 0.91137 1.44852 0.94836 0.95151 1.25652 0.96411 0.95409 0.99642 1.70035 1.00777 1.52168 1.36316 0.86192 0.76857 0.79483 0.82977 1.19760 1.22235 1.16830 1.22560 0.96742 0.94851 0.97548 1.22914 0.99786 0.96317 0.97158 1.22841 0.97367 0.97118 0.99572 1.22701 0.97054 0.97483 0.99609 0.90960 0.90639 0.94660 0.89285 0.89977 0.92202 0.92253 0.92993 0.91144 0.91526 0.90673 0.89074 0.91159 0.93236 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.32 9.65 127.69 1.23 0.92 16 2 N -0.50 -17.04 6.36 -909.90 -5.79 -22.83 16 3 C 0.01 0.19 7.96 86.41 0.69 0.88 16 4 C -0.13 -5.32 7.16 31.24 0.22 -5.09 16 5 C 0.05 2.07 2.78 45.02 0.12 2.20 16 6 H 0.06 2.41 7.91 -2.39 -0.02 2.39 16 7 C 0.04 1.66 1.53 -11.54 -0.02 1.65 16 8 H 0.04 1.82 4.31 -2.39 -0.01 1.81 16 9 C -0.48 -26.32 7.67 25.60 0.20 -26.13 16 10 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 11 C 0.03 1.45 5.47 84.65 0.46 1.92 16 12 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 13 Si 0.92 45.18 26.71 68.60 1.83 47.01 16 14 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 16 H -0.24 -11.51 6.40 99.48 0.64 -10.88 16 17 C -0.10 -3.83 3.11 -10.27 -0.03 -3.86 16 18 C -0.12 -3.95 6.84 31.12 0.21 -3.74 16 19 C -0.13 -3.89 8.08 31.11 0.25 -3.64 16 20 C -0.13 -5.07 7.10 31.11 0.22 -4.85 16 21 H 0.07 1.92 5.49 -2.39 -0.01 1.91 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.03 0.87 7.62 -2.39 -0.02 0.85 16 24 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.08 2.14 7.62 -2.38 -0.02 2.12 16 26 H 0.06 2.66 7.56 -2.39 -0.02 2.65 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.26 7.96 -2.39 -0.02 2.24 16 31 H 0.07 2.04 6.49 -2.38 -0.02 2.03 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.05 2.20 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -62.36 271.40 0.88 -61.48 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.97 Total: 12.96 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.56 Total: -39.75 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -5.49 Total: -81.70 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.83 Total: 47.01 kcal Total: -62.36 0.88 -61.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.945 kcal (2) G-P(sol) polarization free energy of solvation -62.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds