Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47478 * 110.99819 * 2 1 4 4 C 1.53515 * 87.93355 * 221.29633 * 3 2 1 5 5 C 1.47481 * 110.99788 * 264.02967 * 2 1 3 6 6 H 1.08995 * 113.47706 * 23.87687 * 5 2 1 7 7 C 1.52999 * 113.47554 * 253.46361 * 5 2 1 8 8 H 1.09001 * 109.47411 * 204.50439 * 7 5 2 9 9 C 1.50694 * 109.47265 * 324.51054 * 7 5 2 10 10 H 1.08002 * 120.00179 * 239.99421 * 9 7 5 11 11 C 1.37879 * 120.00472 * 59.99739 * 9 7 5 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.53001 * 109.46901 * 84.50693 * 7 5 2 18 18 C 1.53784 * 113.61514 * 159.13401 * 17 7 5 19 19 C 1.53951 * 87.02097 * 220.04903 * 18 17 7 20 20 C 1.53782 * 87.11452 * 25.36384 * 19 18 17 21 21 H 1.09010 * 109.47218 * 155.97019 * 1 2 3 22 22 H 1.08999 * 109.47546 * 275.97255 * 1 2 3 23 23 H 1.08996 * 109.47574 * 35.97314 * 1 2 3 24 24 H 1.09004 * 113.47580 * 336.06023 * 3 2 1 25 25 H 1.08999 * 113.48094 * 106.52925 * 3 2 1 26 26 H 1.08993 * 114.17093 * 272.38046 * 4 3 2 27 27 H 1.08999 * 114.17122 * 139.66597 * 4 3 2 28 28 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 29 29 H 1.08994 * 112.85091 * 290.33634 * 17 7 5 30 30 H 1.08996 * 113.61278 * 334.57445 * 18 17 7 31 31 H 1.09005 * 113.60798 * 105.47671 * 18 17 7 32 32 H 1.09002 * 113.54448 * 270.81276 * 19 18 17 33 33 H 1.09002 * 113.74221 * 139.94128 * 19 18 17 34 34 H 1.09000 * 113.61853 * 220.08953 * 20 19 18 35 35 H 1.09002 * 113.69072 * 89.18898 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3768 0.0000 4 6 3.0537 0.9121 -1.0125 5 6 1.9974 -0.1432 -1.3694 6 1 1.2996 0.1830 -2.1405 7 6 2.5887 -1.5255 -1.6530 8 1 3.3190 -1.4500 -2.4587 9 6 3.2633 -2.0479 -0.4109 10 1 4.3178 -2.2810 -0.4264 11 6 2.5345 -2.2283 0.7455 12 7 1.2505 -1.9440 0.7645 13 14 3.3705 -2.8765 2.2851 14 1 2.3757 -2.9787 3.3828 15 1 3.9438 -4.2182 2.0095 16 1 4.4567 -1.9470 2.6870 17 6 1.4699 -2.4836 -2.0670 18 6 1.9678 -3.7118 -2.8471 19 6 0.7264 -3.5462 -3.7424 20 6 0.7391 -2.0589 -3.3517 21 1 -0.3634 -0.9387 -0.4185 22 1 -0.3634 0.1069 1.0220 23 1 -0.3634 0.8316 -0.6036 24 1 1.2999 2.1097 -0.4057 25 1 2.4186 1.6804 0.9584 26 1 3.9570 0.5040 -0.5594 27 1 3.2548 1.6291 -1.8084 28 1 0.7376 -2.0713 1.5780 29 1 0.7989 -2.7313 -1.2446 30 1 2.9092 -3.5444 -3.3705 31 1 1.9655 -4.6312 -2.2616 32 1 -0.1480 -4.0858 -3.3785 33 1 0.9218 -3.7213 -4.8004 34 1 -0.2537 -1.6458 -3.1731 35 1 1.3434 -1.4376 -4.0127 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = 97.401753 kcal Electronic energy + Delta-G solvation = -15163.664124 eV Core-core repulsion = 12972.312245 eV Total energy + Delta-G solvation = -2191.351879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.15262 -37.26799 -32.56359 -30.10151 -28.34350 -24.99435 -24.06343 -23.62275 -22.81530 -20.49138 -18.42055 -18.18789 -15.77753 -14.92678 -14.57550 -14.32272 -13.81634 -13.71278 -12.95708 -12.16238 -11.92376 -11.52812 -11.41801 -11.04217 -10.87430 -10.75043 -10.61397 -10.45477 -10.21209 -9.97740 -9.59291 -9.50249 -9.41479 -8.86708 -8.69754 -8.43559 -8.04497 -6.73333 -5.58550 -3.58754 3.47521 3.51138 3.55788 4.68195 5.41708 5.59188 5.63878 5.71491 5.78666 5.80951 6.03295 6.16737 6.33021 6.42932 6.48362 6.52946 6.61443 6.67478 6.69113 6.77327 6.81815 6.87398 6.96419 7.15050 7.24231 7.27434 7.36906 7.54518 7.73724 7.97361 8.09690 8.28384 8.65651 8.83776 9.24843 9.96142 11.36366 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.017366 C = 0.012697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.833751 B = 1611.934522 C = 2204.758501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.342 5.342 3 C -0.051 4.051 4 C -0.137 4.137 5 C 0.047 3.953 6 H 0.033 0.967 7 C 0.072 3.928 8 H 0.016 0.984 9 C -0.519 4.519 10 H 0.042 0.958 11 C 0.094 3.906 12 N -0.822 5.822 13 Si 0.878 3.122 14 H -0.293 1.293 15 H -0.286 1.286 16 H -0.283 1.283 17 C -0.082 4.082 18 C -0.129 4.129 19 C -0.145 4.145 20 C -0.149 4.149 21 H 0.074 0.926 22 H 0.040 0.960 23 H -0.018 1.018 24 H 0.033 0.967 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.247 0.753 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 1.858 -4.272 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.065 5.065 3 C -0.180 4.180 4 C -0.174 4.174 5 C -0.063 4.063 6 H 0.050 0.950 7 C 0.053 3.947 8 H 0.034 0.966 9 C -0.556 4.556 10 H 0.060 0.940 11 C -0.111 4.111 12 N -0.458 5.458 13 Si 0.708 3.292 14 H -0.219 1.219 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.100 4.100 18 C -0.166 4.166 19 C -0.183 4.183 20 C -0.186 4.186 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.000 1.000 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.803 1.358 -3.585 4.236 hybrid contribution -0.015 0.374 0.317 0.490 sum -1.817 1.732 -3.267 4.120 Atomic orbital electron populations 1.22439 0.91961 0.98270 0.98576 1.70940 1.06777 1.07956 1.20831 1.24159 0.98589 0.96648 0.98584 1.23042 0.98766 0.97862 0.97760 1.23419 0.94203 0.97703 0.90956 0.94963 1.18553 0.91811 0.89393 0.94960 0.96573 1.20612 0.94463 1.45310 0.95240 0.93975 1.24549 0.94705 0.94560 0.97239 1.69929 1.06520 1.42876 1.26469 0.86932 0.79275 0.78941 0.84060 1.21921 1.21187 1.20959 1.22640 0.98713 0.94703 0.93961 1.22824 0.95854 1.00061 0.97905 1.22840 0.99256 0.97974 0.98210 1.23029 0.99870 0.94902 1.00821 0.90701 0.94138 1.00024 0.94854 0.92276 0.88903 0.94072 0.94115 0.86958 0.91787 0.92962 0.91461 0.93390 0.93493 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 7.94 60.06 0.48 1.29 16 2 N -0.34 -8.02 2.64 -244.79 -0.65 -8.67 16 3 C -0.05 -1.07 7.70 -7.54 -0.06 -1.13 16 4 C -0.14 -2.88 7.83 -26.20 -0.20 -3.09 16 5 C 0.05 1.07 2.74 -71.43 -0.20 0.87 16 6 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 7 C 0.07 1.71 1.98 -91.77 -0.18 1.53 16 8 H 0.02 0.38 7.98 -51.93 -0.41 -0.03 16 9 C -0.52 -13.69 7.75 -34.44 -0.27 -13.95 16 10 H 0.04 1.15 7.81 -52.49 -0.41 0.74 16 11 C 0.09 2.46 4.48 -17.82 -0.08 2.39 16 12 N -0.82 -21.20 5.46 55.43 0.30 -20.90 16 13 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 17 C -0.08 -1.81 2.83 -89.80 -0.25 -2.06 16 18 C -0.13 -2.59 7.62 -25.83 -0.20 -2.79 16 19 C -0.15 -2.56 8.09 -25.83 -0.21 -2.77 16 20 C -0.15 -2.84 6.66 -25.91 -0.17 -3.02 16 21 H 0.07 1.72 6.93 -51.92 -0.36 1.36 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H -0.02 -0.38 7.52 -51.93 -0.39 -0.77 16 24 H 0.03 0.66 7.54 -51.93 -0.39 0.27 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.09 2.10 7.49 -51.93 -0.39 1.71 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.25 6.38 8.31 -41.32 -0.34 6.03 16 29 H 0.11 2.81 5.77 -51.93 -0.30 2.51 16 30 H 0.06 1.26 7.99 -51.93 -0.41 0.85 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 264.09 15.07 3.98 3.98 Total: -1.00 -25.77 264.09 -8.68 -34.46 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.96 Total: -2.47 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.34 Total: -22.73 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: -0.34 Total: -29.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.77 -8.68 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.860 kcal (2) G-P(sol) polarization free energy of solvation -25.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds