Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46841 * 110.99984 * 2 1 4 4 C 1.53047 * 109.52034 * 185.84185 * 3 2 1 5 5 C 1.53129 * 109.30740 * 300.84272 * 4 3 2 6 6 C 1.53111 * 109.16046 * 57.59711 * 5 4 3 7 7 H 1.09003 * 109.50443 * 62.36107 * 6 5 4 8 8 C 1.52994 * 109.50412 * 182.44017 * 6 5 4 9 9 C 1.50708 * 109.47312 * 184.91840 * 8 6 5 10 10 C 1.35030 * 120.00207 * 234.63719 * 9 8 6 11 11 C 1.40071 * 120.00045 * 353.31382 * 10 9 8 12 12 H 1.08003 * 120.00071 * 354.48443 * 11 10 9 13 13 C 1.40308 * 119.99763 * 174.47818 * 11 10 9 14 14 N 1.30680 * 120.00152 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99657 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47069 * 269.99838 * 15 13 11 17 17 H 1.48500 * 109.47572 * 29.99942 * 15 13 11 18 18 H 1.48505 * 109.47198 * 150.00153 * 15 13 11 19 19 C 1.46844 * 110.99831 * 124.21418 * 2 1 3 20 20 H 1.09005 * 109.46809 * 295.78790 * 1 2 3 21 21 H 1.09000 * 109.47027 * 55.78495 * 1 2 3 22 22 H 1.08989 * 109.47443 * 175.79231 * 1 2 3 23 23 H 1.08999 * 109.46886 * 305.85539 * 3 2 1 24 24 H 1.08997 * 109.46480 * 65.83195 * 3 2 1 25 25 H 1.09000 * 109.50177 * 60.76445 * 4 3 2 26 26 H 1.09000 * 109.49898 * 180.84044 * 4 3 2 27 27 H 1.08997 * 109.49014 * 297.70780 * 5 4 3 28 28 H 1.09000 * 109.54937 * 177.51762 * 5 4 3 29 29 H 1.09002 * 109.47094 * 64.92146 * 8 6 5 30 30 H 1.08993 * 109.47205 * 304.91862 * 8 6 5 31 31 H 1.08007 * 119.99470 * 54.63649 * 9 8 6 32 32 H 1.07996 * 120.00061 * 173.31648 * 10 9 8 33 33 H 0.97006 * 119.99796 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46662 * 54.14509 * 19 2 1 35 35 H 1.09002 * 109.45841 * 294.16367 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1196 0.5364 1.0138 6 6 3.5182 -0.8716 1.0207 7 1 3.7813 -1.3844 0.0955 8 6 4.0681 -1.6560 2.2136 9 6 3.5709 -3.0774 2.1525 10 6 2.9203 -3.6111 3.2085 11 6 2.8295 -2.8961 4.4095 12 1 3.3543 -1.9587 4.5209 13 6 2.0567 -3.3975 5.4678 14 7 1.4220 -4.5319 5.3332 15 14 1.9351 -2.4435 7.0693 16 1 3.0209 -2.8747 7.9860 17 1 2.0694 -0.9909 6.7916 18 1 0.6183 -2.7066 7.7034 19 6 1.9953 -0.7709 1.1337 20 1 -0.3633 0.4471 0.9254 21 1 -0.3633 0.5779 -0.8498 22 1 -0.3634 -1.0248 -0.0754 23 1 1.5635 1.9258 -0.8329 24 1 1.7326 1.8607 0.9376 25 1 3.7814 0.8567 -1.0907 26 1 3.9099 2.3511 -0.1318 27 1 3.8902 1.0353 1.9553 28 1 5.2005 0.4702 0.8894 29 1 3.7300 -1.1924 3.1404 30 1 5.1575 -1.6505 2.1810 31 1 3.7350 -3.6691 1.2640 32 1 2.4699 -4.5893 3.1272 33 1 0.8874 -4.8783 6.0647 34 1 1.5634 -1.7716 1.1241 35 1 1.7326 -0.2708 2.0659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260463344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -12.886055 kcal Electronic energy + Delta-G solvation = -14008.694139 eV Core-core repulsion = 11812.559821 eV Total energy + Delta-G solvation = -2196.134317 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.66553 -34.90086 -33.50046 -32.11996 -30.02995 -26.45658 -26.12990 -24.10459 -22.34750 -21.05499 -19.13997 -18.56061 -16.11736 -15.31758 -14.91754 -14.66410 -14.16567 -13.95292 -13.27430 -13.14673 -12.49884 -12.40475 -11.99570 -11.74866 -11.48424 -11.29106 -11.15526 -10.91484 -10.70413 -10.50064 -10.00335 -9.88828 -9.84793 -9.39767 -9.28541 -8.75819 -7.93875 -7.48275 -6.67464 -4.16938 2.98385 3.11158 3.15911 3.96411 4.02434 4.33752 5.17821 5.25197 5.33098 5.52370 5.56739 5.70696 5.74840 5.87933 5.94571 6.07377 6.11533 6.18713 6.33687 6.37545 6.44034 6.67854 6.76986 6.83103 7.10397 7.19246 7.27007 7.35309 7.50012 7.55353 7.72760 7.98010 8.49928 8.77119 9.20772 9.36657 10.36590 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.007976 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.716855 B = 3509.847406 C = 3627.635904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.056 3.944 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.073 4.073 7 H 0.063 0.937 8 C -0.037 4.037 9 C -0.416 4.416 10 C 0.048 3.952 11 C -0.462 4.462 12 H 0.075 0.925 13 C 0.072 3.928 14 N -0.825 5.825 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.263 1.263 18 H -0.279 1.279 19 C 0.072 3.928 20 H 0.021 0.979 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.278 0.722 34 H 0.084 0.916 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 9.449 -5.738 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.092 4.092 7 H 0.082 0.918 8 C -0.074 4.074 9 C -0.438 4.438 10 C 0.028 3.972 11 C -0.493 4.493 12 H 0.093 0.907 13 C -0.144 4.144 14 N -0.453 5.453 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.187 1.187 18 H -0.204 1.204 19 C -0.055 4.055 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.441 9.054 -6.030 10.887 hybrid contribution -0.498 0.687 1.550 1.767 sum -0.939 9.741 -4.479 10.763 Atomic orbital electron populations 1.22303 0.88084 1.02125 0.99629 1.61986 1.06965 1.13027 1.45233 1.22045 0.95784 0.89823 0.99527 1.21577 0.94489 0.99451 0.99756 1.21708 0.99552 0.96844 0.97580 1.21184 0.93655 0.93980 1.00410 0.91804 1.20042 0.96541 0.95114 0.95718 1.21894 1.24536 0.96944 1.00420 1.19859 0.90151 0.95400 0.91838 1.19682 1.25356 1.06977 0.97255 0.90730 1.26106 0.93512 0.94300 1.00442 1.69576 1.24552 1.17814 1.33320 0.86365 0.78141 0.80950 0.81492 1.19494 1.18692 1.20411 1.22093 0.95845 0.98152 0.89450 0.96049 0.92173 0.91339 0.91700 0.95465 0.91505 0.92370 0.92706 0.92372 0.92223 0.95627 0.91940 0.90669 0.91123 0.89717 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 60.07 0.58 0.97 16 2 N -0.55 -9.12 4.91 -242.96 -1.19 -10.31 16 3 C 0.06 0.81 5.47 -3.83 -0.02 0.79 16 4 C -0.11 -1.60 6.09 -26.64 -0.16 -1.76 16 5 C -0.12 -1.91 5.29 -26.61 -0.14 -2.06 16 6 C -0.07 -1.40 2.34 -90.54 -0.21 -1.61 16 7 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.04 -0.81 4.91 -27.88 -0.14 -0.95 16 9 C -0.42 -10.47 8.68 -35.44 -0.31 -10.78 16 10 C 0.05 1.31 9.38 -40.03 -0.38 0.93 16 11 C -0.46 -12.66 8.54 -38.12 -0.33 -12.99 16 12 H 0.07 2.00 5.67 -52.48 -0.30 1.70 16 13 C 0.07 1.89 5.50 -17.26 -0.09 1.79 16 14 N -0.83 -22.40 12.87 55.57 0.72 -21.69 16 15 Si 0.91 19.62 29.56 -169.99 -5.03 14.59 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 C 0.07 1.39 4.55 -3.83 -0.02 1.37 16 20 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 21 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 22 H 0.07 0.99 8.14 -51.94 -0.42 0.57 16 23 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.40 5.46 -51.93 -0.28 1.12 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.08 2.17 7.43 -52.49 -0.39 1.78 16 33 H 0.28 6.89 8.29 -40.82 -0.34 6.55 16 34 H 0.08 1.83 7.39 -51.93 -0.38 1.45 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 278.91 15.07 4.20 4.20 Total: -1.00 -27.34 278.91 -8.50 -35.83 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.98 Total: 1.65 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -1.22 Total: -24.28 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: -0.48 Total: -32.00 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.34 -8.50 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260463344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.949 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds