Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47957 * 111.00185 * 2 1 4 4 C 1.53942 * 86.17657 * 222.41576 * 3 2 1 5 5 C 1.53000 * 113.73289 * 138.07600 * 4 3 2 6 6 H 1.08990 * 109.47482 * 301.89814 * 5 4 3 7 7 C 1.50700 * 109.46943 * 61.90302 * 5 4 3 8 8 H 1.07996 * 120.00407 * 34.09471 * 7 5 4 9 9 C 1.37882 * 119.99770 * 214.10188 * 7 5 4 10 10 N 1.31510 * 120.00101 * 4.66573 * 9 7 5 11 11 Si 1.86798 * 119.99991 * 184.66738 * 9 7 5 12 12 H 1.48501 * 109.47202 * 179.97438 * 11 9 7 13 13 H 1.48502 * 109.47188 * 299.99940 * 11 9 7 14 14 H 1.48498 * 109.47236 * 59.99753 * 11 9 7 15 15 C 1.52997 * 109.46812 * 181.89601 * 5 4 3 16 16 C 1.53781 * 113.61201 * 163.21361 * 15 5 4 17 17 C 1.53955 * 87.02059 * 220.04935 * 16 15 5 18 18 C 1.53778 * 87.11114 * 25.36191 * 17 16 15 19 19 C 1.48183 * 111.07305 * 260.55849 * 2 1 3 20 20 H 1.09003 * 109.46881 * 60.00189 * 1 2 3 21 21 H 1.08996 * 109.47395 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46893 * 300.00847 * 1 2 3 23 23 H 1.08994 * 113.76257 * 108.10003 * 3 2 1 24 24 H 1.09000 * 113.75587 * 336.72809 * 3 2 1 25 25 H 1.08997 * 113.73107 * 269.25626 * 4 3 2 26 26 H 0.97005 * 120.00108 * 353.84420 * 10 9 7 27 27 H 1.09000 * 112.85376 * 294.40449 * 15 5 4 28 28 H 1.08997 * 113.61765 * 334.56704 * 16 15 5 29 29 H 1.09004 * 113.61824 * 105.47082 * 16 15 5 30 30 H 1.09003 * 113.53801 * 270.81355 * 17 16 15 31 31 H 1.08995 * 113.74588 * 139.94339 * 17 16 15 32 32 H 1.09005 * 113.61615 * 220.09706 * 18 17 16 33 33 H 1.08996 * 113.61633 * 89.19063 * 18 17 16 34 34 H 1.09000 * 113.75738 * 23.24592 * 19 2 1 35 35 H 1.09001 * 113.82804 * 251.81613 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8790 -1.0360 5 6 3.2612 1.8567 -2.1882 6 1 2.3180 2.0592 -2.6954 7 6 3.8261 3.1440 -1.6452 8 1 4.4881 3.1259 -0.7921 9 6 3.4978 4.3450 -2.2376 10 7 2.6210 4.3770 -3.2173 11 14 4.2984 5.9266 -1.6488 12 1 3.7796 7.0694 -2.4426 13 1 3.9825 6.1366 -0.2130 14 1 5.7701 5.8311 -1.8230 15 6 4.2520 1.2431 -3.1796 16 6 4.2574 1.9350 -4.5529 17 6 4.3856 0.5305 -5.1704 18 6 3.7127 -0.0062 -3.8961 19 6 2.0019 -0.2268 -1.3640 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 2.4461 1.6802 0.9482 24 1 1.3011 2.1197 -0.3942 25 1 3.9459 0.5066 -0.5952 26 1 2.2721 3.5491 -3.5832 27 1 5.2467 1.1077 -2.7550 28 1 3.3189 2.4340 -4.7943 29 1 5.1293 2.5676 -4.7198 30 1 5.4175 0.2007 -5.2912 31 1 3.7884 0.3910 -6.0714 32 1 4.1455 -0.9385 -3.5332 33 1 2.6249 -0.0389 -3.9574 34 1 1.3044 0.0403 -2.1579 35 1 2.4506 -1.2104 -1.5036 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = 39.969740 kcal Electronic energy + Delta-G solvation = -14577.668412 eV Core-core repulsion = 12383.826094 eV Total energy + Delta-G solvation = -2193.842318 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51715 -37.64096 -33.31495 -30.75833 -27.73093 -25.71951 -24.59387 -23.94198 -23.18252 -20.74643 -19.05467 -18.20662 -16.74871 -15.24688 -14.99362 -14.32393 -14.13141 -13.81593 -13.63567 -12.82313 -12.45032 -12.10143 -11.80751 -11.53699 -11.30132 -10.99638 -10.76856 -10.72827 -10.30525 -10.13354 -9.99544 -9.80693 -9.55021 -9.35664 -9.06016 -8.38367 -8.29131 -8.06603 -6.27767 -3.98075 3.45218 3.46472 3.64735 4.54875 4.58039 5.27733 5.36788 5.43326 5.51746 5.57197 5.63570 5.67346 5.78859 5.94993 6.03609 6.10305 6.19913 6.23945 6.24614 6.44454 6.48388 6.53271 6.59921 6.78261 6.80472 6.88121 7.01141 7.10350 7.23817 7.47229 7.62661 7.65058 8.30645 8.49752 8.95199 9.71968 11.09078 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.013981 C = 0.009536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.448642 B = 2002.189350 C = 2935.563727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.498 5.498 3 C 0.023 3.977 4 C -0.087 4.087 5 C 0.046 3.954 6 H 0.036 0.964 7 C -0.583 4.583 8 H 0.046 0.954 9 C 0.025 3.975 10 N -0.915 5.915 11 Si 1.060 2.940 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.289 1.289 15 C -0.087 4.087 16 C -0.119 4.119 17 C -0.150 4.150 18 C -0.143 4.143 19 C 0.001 3.999 20 H 0.031 0.969 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.269 0.731 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -6.697 0.745 6.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.221 5.221 3 C -0.105 4.105 4 C -0.106 4.106 5 C 0.026 3.974 6 H 0.054 0.946 7 C -0.621 4.621 8 H 0.065 0.935 9 C -0.179 4.179 10 N -0.553 5.553 11 Si 0.889 3.111 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.216 1.216 15 C -0.106 4.106 16 C -0.157 4.157 17 C -0.188 4.188 18 C -0.181 4.181 19 C -0.127 4.127 20 H 0.049 0.951 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.368 -5.498 1.086 5.617 hybrid contribution -0.307 -1.141 -0.424 1.256 sum -0.675 -6.639 0.662 6.707 Atomic orbital electron populations 1.22793 0.91149 1.01156 1.00660 1.68471 1.07807 1.20700 1.25094 1.23758 0.97413 0.89405 0.99940 1.22885 0.95947 0.94473 0.97306 1.18932 0.94873 0.92927 0.90623 0.94570 1.21804 1.31950 0.91920 1.16425 0.93544 1.25645 0.95057 1.01824 0.95380 1.70838 1.26969 1.31292 1.26173 0.83666 0.75799 0.75920 0.75678 1.21004 1.21624 1.21578 1.22640 0.99745 0.93063 0.95147 1.22790 1.01906 0.94262 0.96695 1.22927 0.99699 0.99187 0.96976 1.23020 0.99653 0.98256 0.97133 1.24149 0.98168 1.00239 0.90170 0.95068 0.92149 0.92031 0.90586 0.91346 0.90467 0.91765 0.91293 0.90065 0.92926 0.91461 0.92924 0.93113 0.91169 0.92026 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 60.07 0.58 0.45 16 2 N -0.50 -9.06 6.55 -246.40 -1.61 -10.67 16 3 C 0.02 0.46 7.08 -2.76 -0.02 0.44 16 4 C -0.09 -1.79 3.19 -89.69 -0.29 -2.07 16 5 C 0.05 1.05 1.27 -91.77 -0.12 0.94 16 6 H 0.04 0.92 5.99 -51.93 -0.31 0.61 16 7 C -0.58 -15.31 7.76 -34.44 -0.27 -15.58 16 8 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 9 C 0.02 0.68 5.45 -17.82 -0.10 0.58 16 10 N -0.92 -26.16 13.49 55.43 0.75 -25.42 16 11 Si 1.06 24.68 29.91 -169.99 -5.08 19.60 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.09 -1.83 3.07 -89.81 -0.28 -2.11 16 16 C -0.12 -2.50 7.41 -25.83 -0.19 -2.69 16 17 C -0.15 -2.60 8.09 -25.83 -0.21 -2.81 16 18 C -0.14 -2.55 6.35 -25.92 -0.16 -2.72 16 19 C 0.00 0.02 5.93 -2.64 -0.02 0.01 16 20 H 0.03 0.49 7.63 -51.93 -0.40 0.10 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 23 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 24 H 0.07 1.48 7.88 -51.93 -0.41 1.07 16 25 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.27 7.61 4.80 -40.82 -0.20 7.42 16 27 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.87 6.38 -51.93 -0.33 1.54 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.25 7.20 -51.93 -0.37 0.88 16 34 H 0.06 1.13 7.06 -51.93 -0.37 0.76 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 272.69 15.07 4.11 4.11 Total: -1.00 -27.32 272.69 -8.72 -36.05 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.82 Total: 1.90 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -1.06 Total: -25.56 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.87 Total: -36.09 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.32 -8.72 -36.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.015 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds