Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47060 * 2 1 4 4 C 1.49007 * 111.17189 * 52.79966 * 3 2 1 5 5 C 1.54934 * 103.26000 * 159.69422 * 4 3 2 6 6 C 1.54594 * 102.92195 * 322.53875 * 5 4 3 7 7 C 1.47907 * 111.00081 * 170.00156 * 3 2 1 8 8 H 1.09001 * 109.91623 * 333.50743 * 7 3 2 9 9 C 1.53003 * 109.91630 * 94.60086 * 7 3 2 10 10 C 1.50695 * 109.47256 * 294.59785 * 9 7 3 11 11 C 1.35034 * 119.99692 * 126.23042 * 10 9 7 12 12 C 1.40066 * 120.00327 * 6.38097 * 11 10 9 13 13 H 1.07999 * 120.00235 * 8.74484 * 12 11 10 14 14 C 1.40305 * 120.00029 * 188.74516 * 12 11 10 15 15 N 1.30690 * 120.00294 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00094 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47554 * 89.99485 * 16 14 12 18 18 H 1.48500 * 109.47132 * 210.00072 * 16 14 12 19 19 H 1.48507 * 109.46956 * 329.99616 * 16 14 12 20 20 H 1.08996 * 109.47136 * 60.00577 * 1 2 3 21 21 H 1.09004 * 109.46933 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47215 * 300.00191 * 1 2 3 23 23 H 1.09003 * 109.47389 * 239.99831 * 2 1 3 24 24 H 1.09004 * 109.47066 * 119.99651 * 2 1 3 25 25 H 1.09000 * 110.68702 * 41.22589 * 4 3 2 26 26 H 1.09004 * 110.75802 * 278.19023 * 4 3 2 27 27 H 1.09002 * 110.72003 * 204.18158 * 5 4 3 28 28 H 1.08993 * 110.72523 * 80.90491 * 5 4 3 29 29 H 1.08999 * 110.31498 * 263.04374 * 6 5 4 30 30 H 1.09001 * 110.39071 * 140.91412 * 6 5 4 31 31 H 1.09002 * 109.46765 * 54.60072 * 9 7 3 32 32 H 1.09004 * 109.46888 * 174.59680 * 9 7 3 33 33 H 1.08001 * 119.99870 * 306.23168 * 10 9 7 34 34 H 1.08008 * 119.99499 * 186.37385 * 11 10 9 35 35 H 0.96996 * 120.00328 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4070 2.1724 1.1068 5 6 2.3846 3.3617 1.2803 6 6 3.7670 2.7094 1.0490 7 6 3.4784 1.4314 0.2397 8 1 3.7896 0.5544 0.8072 9 6 4.2247 1.4800 -1.0951 10 6 3.9986 0.1921 -1.8441 11 6 3.5297 0.2208 -3.1101 12 6 3.3801 1.4450 -3.7740 13 1 3.7690 2.3503 -3.3317 14 6 2.7251 1.4953 -5.0138 15 7 2.2550 0.3998 -5.5494 16 14 2.5262 3.1279 -5.8996 17 1 3.6946 3.3549 -6.7877 18 1 1.2839 3.1018 -6.7127 19 1 2.4421 4.2251 -4.9023 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 1.3570 1.5790 2.0197 26 1 0.4154 2.5273 0.8255 27 1 2.3161 3.7736 2.2871 28 1 2.1916 4.1318 0.5335 29 1 4.2305 2.4567 2.0026 30 1 4.4127 3.3791 0.4809 31 1 3.8536 2.3155 -1.6886 32 1 5.2910 1.6107 -0.9106 33 1 4.2115 -0.7538 -1.3684 34 1 3.2702 -0.7004 -3.6108 35 1 1.8025 0.4345 -6.4067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260466848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = -1.651960 kcal Electronic energy + Delta-G solvation = -14220.985263 eV Core-core repulsion = 12025.338092 eV Total energy + Delta-G solvation = -2195.647170 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.66314 -34.37998 -32.95890 -32.11666 -29.19871 -28.05836 -25.57859 -23.81579 -22.10807 -20.09133 -19.44722 -18.52949 -16.16930 -15.51206 -14.85729 -14.58268 -14.17683 -13.60201 -13.03680 -12.78800 -12.48687 -12.11350 -11.82476 -11.45783 -11.20738 -11.10897 -10.92513 -10.71475 -10.55955 -10.45789 -10.30396 -10.24795 -9.87318 -9.39015 -9.28860 -8.68734 -7.66208 -7.29409 -6.56910 -4.04298 3.06654 3.18829 3.25185 4.06408 4.12603 4.61332 5.14274 5.19532 5.39045 5.60972 5.69043 5.74533 5.80668 5.91660 5.99892 6.10619 6.20080 6.22518 6.25560 6.40611 6.54687 6.63895 6.78678 6.85367 6.98643 7.12957 7.34650 7.42733 7.72036 7.74041 7.92773 8.10559 8.59861 8.88488 9.30692 9.48648 10.47363 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029165 B = 0.009499 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.832913 B = 2947.036005 C = 3104.443123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 N -0.489 5.489 4 C 0.030 3.970 5 C -0.122 4.122 6 C -0.130 4.130 7 C 0.076 3.924 8 H 0.034 0.966 9 C -0.026 4.026 10 C -0.412 4.412 11 C 0.055 3.945 12 C -0.451 4.451 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.828 5.828 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.262 1.262 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.097 0.903 24 H 0.016 0.984 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 3.454 9.360 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.214 5.214 4 C -0.098 4.098 5 C -0.160 4.160 6 C -0.168 4.168 7 C -0.032 4.032 8 H 0.052 0.948 9 C -0.063 4.063 10 C -0.434 4.434 11 C 0.035 3.965 12 C -0.481 4.481 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.456 5.456 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.186 1.186 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.327 3.566 8.624 9.618 hybrid contribution -0.023 0.165 0.334 0.373 sum -2.350 3.731 8.958 9.984 Atomic orbital electron populations 1.21836 0.96135 1.00926 1.01742 1.22296 0.94550 0.89880 1.01270 1.64850 1.04264 1.11663 1.40582 1.23301 0.98562 0.94827 0.93075 1.22434 0.95145 0.97864 1.00586 1.22514 0.97180 0.97856 0.99229 1.22500 0.88557 0.94739 0.97449 0.94772 1.20022 0.94517 0.99129 0.92656 1.21737 1.29817 0.93617 0.98271 1.19762 0.89016 0.95822 0.91872 1.19618 1.31224 0.96130 1.01156 0.90805 1.26085 0.93315 0.97404 0.97497 1.69581 1.30211 1.28915 1.16893 0.86366 0.78065 0.82981 0.79502 1.19766 1.20565 1.18592 0.91731 0.92998 0.93673 0.88500 0.96602 0.95027 0.90836 0.92125 0.90948 0.92698 0.91144 0.91197 0.95946 0.92664 0.91098 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.59 37.16 0.36 -2.04 16 2 C 0.05 0.90 5.41 -3.83 -0.02 0.88 16 3 N -0.49 -9.54 4.94 -222.15 -1.10 -10.64 16 4 C 0.03 0.48 5.13 -1.63 -0.01 0.48 16 5 C -0.12 -1.79 7.06 -24.87 -0.18 -1.97 16 6 C -0.13 -2.07 6.57 -25.37 -0.17 -2.24 16 7 C 0.08 1.47 2.60 -66.64 -0.17 1.30 16 8 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 9 C -0.03 -0.59 4.88 -27.88 -0.14 -0.72 16 10 C -0.41 -10.42 7.41 -35.45 -0.26 -10.68 16 11 C 0.06 1.54 9.37 -40.04 -0.38 1.16 16 12 C -0.45 -12.56 8.48 -38.12 -0.32 -12.88 16 13 H 0.07 2.03 5.76 -52.49 -0.30 1.73 16 14 C 0.07 1.92 5.50 -17.26 -0.09 1.83 16 15 N -0.83 -22.83 12.88 55.57 0.72 -22.12 16 16 Si 0.91 20.11 29.56 -169.99 -5.03 15.09 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 20 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.64 6.81 -51.93 -0.35 0.29 16 23 H 0.10 2.12 6.34 -51.93 -0.33 1.79 16 24 H 0.02 0.28 7.81 -51.93 -0.41 -0.12 16 25 H 0.03 0.47 8.02 -51.93 -0.42 0.06 16 26 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 31 H 0.07 1.72 5.51 -51.93 -0.29 1.43 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.07 2.07 7.46 -52.48 -0.39 1.68 16 35 H 0.28 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 276.55 15.07 4.17 4.17 Total: -1.00 -27.99 276.55 -8.39 -36.37 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.77 Total: 2.01 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -1.38 Total: -24.88 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: -0.38 Total: -32.76 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.99 -8.39 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260466848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.722 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds