Wall clock time and date at job start Mon Mar 30 2020 02:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47605 * 2 1 4 4 C 1.48562 * 110.99518 * 290.12576 * 3 2 1 5 5 C 1.54385 * 104.59039 * 200.95820 * 4 3 2 6 6 C 1.54252 * 105.06003 * 23.85189 * 5 4 3 7 7 H 1.09002 * 110.32533 * 241.00103 * 6 5 4 8 8 C 1.53001 * 110.32750 * 118.89802 * 6 5 4 9 9 C 1.50701 * 109.46813 * 67.82215 * 8 6 5 10 10 C 1.35035 * 119.99726 * 126.07522 * 9 8 6 11 11 C 1.40079 * 119.99881 * 6.20641 * 10 9 8 12 12 H 1.07994 * 120.00077 * 355.28595 * 11 10 9 13 13 C 1.40306 * 119.99597 * 175.00591 * 11 10 9 14 14 N 1.30696 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99784 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47236 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46979 * 120.00346 * 15 13 11 18 18 H 1.48495 * 109.47208 * 239.99956 * 15 13 11 19 19 C 1.48719 * 111.01807 * 174.61507 * 3 2 1 20 20 H 1.09003 * 109.46756 * 59.99979 * 1 2 3 21 21 H 1.08995 * 109.47492 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47442 * 300.00604 * 1 2 3 23 23 H 1.09001 * 109.47442 * 239.99396 * 2 1 3 24 24 H 1.09008 * 109.46550 * 119.99592 * 2 1 3 25 25 H 1.09001 * 110.41145 * 82.18335 * 4 3 2 26 26 H 1.08998 * 110.51052 * 319.78121 * 4 3 2 27 27 H 1.09005 * 110.32210 * 264.95736 * 5 4 3 28 28 H 1.08998 * 110.40538 * 142.79232 * 5 4 3 29 29 H 1.09005 * 109.46965 * 307.82998 * 8 6 5 30 30 H 1.08991 * 109.47757 * 187.82582 * 8 6 5 31 31 H 1.08001 * 120.00360 * 306.06402 * 9 8 6 32 32 H 1.08001 * 120.00149 * 186.21476 * 10 9 8 33 33 H 0.97003 * 119.99831 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.38568 * 40.23745 * 19 3 2 35 35 H 1.09002 * 110.50569 * 277.75272 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7473 2.0459 -1.3023 5 6 2.7455 3.2223 -1.3577 6 6 3.8979 2.8148 -0.4169 7 1 3.9914 3.5310 0.3995 8 6 5.2121 2.7229 -1.1949 9 6 5.6268 4.1001 -1.6448 10 6 6.8568 4.5675 -1.3416 11 6 7.7925 3.7278 -0.7240 12 1 7.5068 2.7313 -0.4212 13 6 9.1026 4.1794 -0.5039 14 7 9.4497 5.3836 -0.8747 15 14 10.3507 3.0593 0.3192 16 1 9.7121 1.7575 0.6393 17 1 11.4963 2.8358 -0.5989 18 1 10.8359 3.6942 1.5708 19 6 3.5006 1.4270 0.1303 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 0.7223 2.4153 -1.3340 26 1 1.9275 1.3553 -2.1261 27 1 2.2721 4.1376 -1.0022 28 1 3.1163 3.3586 -2.3736 29 1 5.0745 2.0822 -2.0660 30 1 5.9858 2.3021 -0.5530 31 1 4.9403 4.7132 -2.2099 32 1 7.1191 5.5888 -1.5752 33 1 10.3554 5.6958 -0.7222 34 1 3.9569 0.6378 -0.4673 35 1 3.7948 1.3318 1.1755 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260470137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:36 Heat of formation + Delta-G solvation = -22.926910 kcal Electronic energy + Delta-G solvation = -13588.843869 eV Core-core repulsion = 11392.274147 eV Total energy + Delta-G solvation = -2196.569722 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09694 -36.76792 -35.16908 -33.22293 -30.44526 -30.06269 -27.43234 -25.38643 -23.84319 -21.73803 -21.10166 -20.27028 -18.27034 -17.09214 -16.59644 -16.48643 -15.54194 -15.28279 -14.80758 -14.52712 -13.95735 -13.63731 -13.48635 -13.16171 -13.06655 -12.86194 -12.49208 -12.33088 -12.24180 -12.10430 -11.76246 -11.66456 -11.44996 -11.29800 -11.15338 -10.72777 -9.61679 -9.43671 -8.66955 -6.27310 1.24122 1.37253 1.53147 1.97169 2.22530 3.08507 3.41052 3.80354 3.84840 4.12406 4.26710 4.36214 4.40531 4.63163 4.64548 4.70914 4.75972 4.87913 4.90860 4.97259 5.04441 5.07861 5.21786 5.26270 5.27017 5.33753 5.36494 5.59255 5.69903 5.89708 5.94736 6.16252 6.39898 6.67972 7.10041 7.23827 8.40072 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052602 B = 0.005993 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.166672 B = 4670.693414 C = 5106.292046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 N -0.523 5.523 4 C 0.040 3.960 5 C -0.113 4.113 6 C -0.081 4.081 7 H 0.054 0.946 8 C -0.026 4.026 9 C -0.407 4.407 10 C 0.016 3.984 11 C -0.492 4.492 12 H 0.080 0.920 13 C 0.024 3.976 14 N -0.862 5.862 15 Si 0.986 3.014 16 H -0.256 1.256 17 H -0.265 1.265 18 H -0.264 1.264 19 C 0.041 3.959 20 H 0.053 0.947 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.288 0.712 34 H 0.042 0.958 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 -9.734 2.038 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 N -0.247 5.247 4 C -0.088 4.088 5 C -0.151 4.151 6 C -0.100 4.100 7 H 0.073 0.927 8 C -0.063 4.063 9 C -0.429 4.429 10 C -0.004 4.004 11 C -0.522 4.522 12 H 0.098 0.902 13 C -0.188 4.188 14 N -0.490 5.490 15 Si 0.806 3.194 16 H -0.180 1.180 17 H -0.189 1.189 18 H -0.189 1.189 19 C -0.087 4.087 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.232 -9.309 2.477 14.797 hybrid contribution 1.186 -0.184 -0.572 1.330 sum -10.046 -9.493 1.906 13.952 Atomic orbital electron populations 1.21703 0.93430 1.02386 1.02223 1.22335 0.97399 0.88642 1.00976 1.65449 1.11158 1.16744 1.31366 1.23098 0.99955 0.95517 0.90210 1.22277 0.95201 0.98206 0.99421 1.21816 0.94963 0.95806 0.97465 0.92715 1.19985 0.94962 0.94767 0.96594 1.22175 0.98755 1.00544 1.21391 1.19945 0.93250 0.95019 0.92218 1.19948 0.95122 1.01286 1.35820 0.90244 1.27079 1.01696 0.96478 0.93589 1.69658 1.21289 1.18857 1.39172 0.85107 0.77106 0.78792 0.78375 1.17962 1.18925 1.18873 1.23146 0.88108 0.96514 1.00916 0.92786 0.90728 0.92308 0.94793 0.90510 0.89111 0.93823 0.91750 0.92025 0.95286 0.93493 0.91689 0.93127 0.90177 0.93921 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.97 71.98 0.72 -1.77 16 2 C 0.03 0.77 5.53 86.30 0.48 1.24 16 3 N -0.52 -14.56 5.37 -881.04 -4.73 -19.29 16 4 C 0.04 1.08 5.74 86.45 0.50 1.57 16 5 C -0.11 -3.68 6.23 31.49 0.20 -3.49 16 6 C -0.08 -3.02 3.06 -9.90 -0.03 -3.05 16 7 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 8 C -0.03 -1.14 4.63 29.85 0.14 -1.00 16 9 C -0.41 -20.90 9.20 24.95 0.23 -20.67 16 10 C 0.02 0.91 9.38 21.98 0.21 1.11 16 11 C -0.49 -27.67 8.64 23.22 0.20 -27.47 16 12 H 0.08 4.32 5.51 -2.91 -0.02 4.31 16 13 C 0.02 1.25 5.50 85.37 0.47 1.72 16 14 N -0.86 -47.75 12.87 21.89 0.28 -47.47 16 15 Si 0.99 39.84 29.56 68.60 2.03 41.87 16 16 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 19 C 0.04 1.29 6.05 86.42 0.52 1.81 16 20 H 0.05 0.95 7.26 -2.39 -0.02 0.93 16 21 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.03 0.75 7.88 -2.39 -0.02 0.73 16 24 H 0.08 1.61 8.13 -2.38 -0.02 1.59 16 25 H 0.09 2.13 7.76 -2.39 -0.02 2.11 16 26 H 0.04 1.13 7.83 -2.39 -0.02 1.12 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.06 2.11 7.25 -2.39 -0.02 2.09 16 29 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 2.20 5.38 -2.39 -0.01 2.19 16 31 H 0.06 3.25 7.64 -2.91 -0.02 3.23 16 32 H 0.05 3.10 7.43 -2.91 -0.02 3.08 16 33 H 0.29 14.32 8.29 -92.71 -0.77 13.55 16 34 H 0.04 1.33 7.72 -2.39 -0.02 1.31 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -59.25 279.97 2.24 -57.01 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.03 Total: 17.88 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 3.62 Total: -49.99 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -4.45 Total: -66.77 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -59.25 2.24 -57.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.081 kcal (2) G-P(sol) polarization free energy of solvation -59.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds